data_5KYG # _model_server_result.job_id bW5wwjI3mTiGGF9_Mq0Npw _model_server_result.datetime_utc '2024-11-15 00:32:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kyg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5KYG # _exptl.entry_id 5KYG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KYG _cell.length_a 70.922 _cell.length_b 70.922 _cell.length_c 79.882 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KYG _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5KYG _atom_sites.fract_transf_matrix[1][1] 0.0141 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0141 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012518 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 1 GOL GOL . C 3 HOH A 1 401 23 HOH HOH . C 3 HOH A 2 402 10 HOH HOH . C 3 HOH A 3 403 36 HOH HOH . C 3 HOH A 4 404 26 HOH HOH . C 3 HOH A 5 405 19 HOH HOH . C 3 HOH A 6 406 11 HOH HOH . C 3 HOH A 7 407 16 HOH HOH . C 3 HOH A 8 408 3 HOH HOH . C 3 HOH A 9 409 20 HOH HOH . C 3 HOH A 10 410 14 HOH HOH . C 3 HOH A 11 411 45 HOH HOH . C 3 HOH A 12 412 31 HOH HOH . C 3 HOH A 13 413 17 HOH HOH . C 3 HOH A 14 414 4 HOH HOH . C 3 HOH A 15 415 40 HOH HOH . C 3 HOH A 16 416 1 HOH HOH . C 3 HOH A 17 417 21 HOH HOH . C 3 HOH A 18 418 30 HOH HOH . C 3 HOH A 19 419 41 HOH HOH . C 3 HOH A 20 420 8 HOH HOH . C 3 HOH A 21 421 28 HOH HOH . C 3 HOH A 22 422 43 HOH HOH . C 3 HOH A 23 423 27 HOH HOH . C 3 HOH A 24 424 34 HOH HOH . C 3 HOH A 25 425 50 HOH HOH . C 3 HOH A 26 426 18 HOH HOH . C 3 HOH A 27 427 57 HOH HOH . C 3 HOH A 28 428 13 HOH HOH . C 3 HOH A 29 429 47 HOH HOH . C 3 HOH A 30 430 6 HOH HOH . C 3 HOH A 31 431 7 HOH HOH . C 3 HOH A 32 432 46 HOH HOH . C 3 HOH A 33 433 22 HOH HOH . C 3 HOH A 34 434 25 HOH HOH . C 3 HOH A 35 435 33 HOH HOH . C 3 HOH A 36 436 5 HOH HOH . C 3 HOH A 37 437 12 HOH HOH . C 3 HOH A 38 438 39 HOH HOH . C 3 HOH A 39 439 2 HOH HOH . C 3 HOH A 40 440 29 HOH HOH . C 3 HOH A 41 441 52 HOH HOH . C 3 HOH A 42 442 49 HOH HOH . C 3 HOH A 43 443 37 HOH HOH . C 3 HOH A 44 444 42 HOH HOH . C 3 HOH A 45 445 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 10.085 -22.486 9.26 1 49.49 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . B 2 11.036 -21.538 9.76 1 39.54 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . B 2 10.58 -23.929 9.424 1 47.43 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . B 2 11.123 -24.175 10.736 1 33.88 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . B 2 9.437 -24.93 9.162 1 47.41 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . B 2 9.551 -25.481 7.847 1 51.09 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 6 #