data_5KYJ # _model_server_result.job_id t9bm3dJqEgVFO2CZdUOYEQ _model_server_result.datetime_utc '2024-12-27 08:01:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kyj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 5KYJ # _exptl.entry_id 5KYJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 431.484 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (6~{R})-5-(5-fluoranyl-2-methoxy-pyrimidin-4-yl)-2-(3-methylsulfonylphenyl)-6-propan-2-yl-4,6-dihydropyrrolo[3,4-c]pyrazole _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KYJ _cell.length_a 69.92 _cell.length_b 100.93 _cell.length_c 145.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KYJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G 1 1 C,D,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C20 H22 F N5 O3 S' _chem_comp.formula_weight 431.484 _chem_comp.id 6Y8 _chem_comp.mon_nstd_flag . _chem_comp.name (6~{R})-5-(5-fluoranyl-2-methoxy-pyrimidin-4-yl)-2-(3-methylsulfonylphenyl)-6-propan-2-yl-4,6-dihydropyrrolo[3,4-c]pyrazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O S 6Y8 doub 1 n n S C8 6Y8 sing 2 n n S O1 6Y8 doub 3 n n S C7 6Y8 sing 4 n n C9 C7 6Y8 doub 5 n y C9 C10 6Y8 sing 6 n y C7 C6 6Y8 sing 7 n y C10 C11 6Y8 doub 8 n y C6 C5 6Y8 doub 9 n y C11 C5 6Y8 sing 10 n y C5 N1 6Y8 sing 11 n n N1 C12 6Y8 sing 12 n y N1 N 6Y8 sing 13 n y C12 C13 6Y8 doub 14 n y N C4 6Y8 doub 15 n y C13 C4 6Y8 sing 16 n y C13 C14 6Y8 sing 17 n n C4 C3 6Y8 sing 18 n n C C1 6Y8 sing 19 n n C14 N2 6Y8 sing 20 n n C2 C1 6Y8 sing 21 n n C3 C1 6Y8 sing 22 n n C3 N2 6Y8 sing 23 n n N2 C15 6Y8 sing 24 n n F C16 6Y8 sing 25 n n C15 C16 6Y8 doub 26 n y C15 N4 6Y8 sing 27 n y C16 C17 6Y8 sing 28 n y N4 C18 6Y8 doub 29 n y C17 N3 6Y8 doub 30 n y C18 N3 6Y8 sing 31 n y C18 O2 6Y8 sing 32 n n O2 C19 6Y8 sing 33 n n C10 H1 6Y8 sing 34 n n C12 H2 6Y8 sing 35 n n C19 H3 6Y8 sing 36 n n C19 H4 6Y8 sing 37 n n C19 H5 6Y8 sing 38 n n C17 H6 6Y8 sing 39 n n C3 H7 6Y8 sing 40 n n C1 H8 6Y8 sing 41 n n C2 H9 6Y8 sing 42 n n C2 H10 6Y8 sing 43 n n C2 H11 6Y8 sing 44 n n C H12 6Y8 sing 45 n n C H13 6Y8 sing 46 n n C H14 6Y8 sing 47 n n C14 H15 6Y8 sing 48 n n C14 H16 6Y8 sing 49 n n C11 H17 6Y8 sing 50 n n C9 H18 6Y8 sing 51 n n C6 H19 6Y8 sing 52 n n C8 H20 6Y8 sing 53 n n C8 H21 6Y8 sing 54 n n C8 H22 6Y8 sing 55 n n # _atom_sites.entry_id 5KYJ _atom_sites.fract_transf_matrix[1][1] 0.014302 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009908 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006854 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 6Y8 A 1 501 1 6Y8 368 . F 3 6Y8 E 1 501 1 6Y8 368 . G 4 HOH A 1 601 2 HOH HOH . G 4 HOH A 2 602 4 HOH HOH . G 4 HOH A 3 603 1 HOH HOH . H 4 HOH E 1 601 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 6Y8 . . . F 3 -13.545 9.293 -9.663 1 34.3 ? C10 6Y8 501 E 1 HETATM 2 C C12 6Y8 . . . F 3 -9.689 8.718 -12.383 1 39.22 ? C12 6Y8 501 E 1 HETATM 3 C C13 6Y8 . . . F 3 -9.381 9.169 -13.633 1 40.19 ? C13 6Y8 501 E 1 HETATM 4 C C15 6Y8 . . . F 3 -8.466 9.721 -17.093 1 47.3 ? C15 6Y8 501 E 1 HETATM 5 C C19 6Y8 . . . F 3 -9.276 11.112 -21.604 1 52.51 ? C19 6Y8 501 E 1 HETATM 6 F F 6Y8 . . . F 3 -6.223 8.957 -16.515 1 60.96 ? F 6Y8 501 E 1 HETATM 7 C C16 6Y8 . . . F 3 -7.091 9.347 -17.44 1 51.87 ? C16 6Y8 501 E 1 HETATM 8 C C17 6Y8 . . . F 3 -6.683 9.397 -18.756 1 53.69 ? C17 6Y8 501 E 1 HETATM 9 N N3 6Y8 . . . F 3 -7.539 9.781 -19.69 1 52.05 ? N3 6Y8 501 E 1 HETATM 10 C C18 6Y8 . . . F 3 -8.81 10.124 -19.378 1 55.92 ? C18 6Y8 501 E 1 HETATM 11 O O2 6Y8 . . . F 3 -9.684 10.504 -20.372 1 57.74 ? O2 6Y8 501 E 1 HETATM 12 N N4 6Y8 . . . F 3 -9.26 10.097 -18.099 1 51.72 ? N4 6Y8 501 E 1 HETATM 13 N N2 6Y8 . . . F 3 -8.952 9.742 -15.791 1 44.26 ? N2 6Y8 501 E 1 HETATM 14 C C3 6Y8 . . . F 3 -10.273 10.351 -15.471 1 46.46 ? C3 6Y8 501 E 1 HETATM 15 C C1 6Y8 . . . F 3 -10.278 11.851 -15.283 1 46.55 ? C1 6Y8 501 E 1 HETATM 16 C C2 6Y8 . . . F 3 -9.563 12.546 -16.398 1 54.25 ? C2 6Y8 501 E 1 HETATM 17 C C 6Y8 . . . F 3 -11.712 12.322 -15.306 1 44.2 ? C 6Y8 501 E 1 HETATM 18 C C14 6Y8 . . . F 3 -8.268 9.164 -14.621 1 40.97 ? C14 6Y8 501 E 1 HETATM 19 C C4 6Y8 . . . F 3 -10.538 9.845 -14.138 1 44.19 ? C4 6Y8 501 E 1 HETATM 20 N N1 6Y8 . . . F 3 -10.96 9.13 -12.205 1 38.69 ? N1 6Y8 501 E 1 HETATM 21 N N 6Y8 . . . F 3 -11.546 9.845 -13.253 1 40.94 ? N 6Y8 501 E 1 HETATM 22 C C5 6Y8 . . . F 3 -11.643 8.914 -11.091 1 36.81 ? C5 6Y8 501 E 1 HETATM 23 C C11 6Y8 . . . F 3 -12.853 9.52 -10.832 1 34.51 ? C11 6Y8 501 E 1 HETATM 24 C C9 6Y8 . . . F 3 -13.047 8.471 -8.692 1 36.53 ? C9 6Y8 501 E 1 HETATM 25 C C7 6Y8 . . . F 3 -11.849 7.85 -8.907 1 40.15 ? C7 6Y8 501 E 1 HETATM 26 C C6 6Y8 . . . F 3 -11.183 8.072 -10.096 1 39.6 ? C6 6Y8 501 E 1 HETATM 27 S S 6Y8 . . . F 3 -11.248 6.852 -7.819 1 43.19 ? S 6Y8 501 E 1 HETATM 28 O O 6Y8 . . . F 3 -11.942 5.572 -7.959 1 49.44 ? O 6Y8 501 E 1 HETATM 29 O O1 6Y8 . . . F 3 -11.44 7.406 -6.511 1 38.61 ? O1 6Y8 501 E 1 HETATM 30 C C8 6Y8 . . . F 3 -9.674 6.574 -8.156 1 42.07 ? C8 6Y8 501 E 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #