data_5KYM # _model_server_result.job_id KLBl9xQSGJsdjSwqDNdZgQ _model_server_result.datetime_utc '2025-01-02 17:08:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kym # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":304}' # _entry.id 5KYM # _exptl.entry_id 5KYM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KYM _cell.length_a 173.836 _cell.length_b 173.836 _cell.length_c 173.836 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KYM _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,L 1 1 B,G,H,I,J,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 333 n n C1B O1B LMT sing 334 n n C1B O5B LMT sing 335 n n C1B H1B LMT sing 336 n n C2B C3B LMT sing 337 n n C2B O2B LMT sing 338 n n C2B H2B LMT sing 339 n n C3B C4B LMT sing 340 n n C3B O3B LMT sing 341 n n C3B H3B LMT sing 342 n n C4B C5B LMT sing 343 n n C4B O4' LMT sing 344 n n C4B H4B LMT sing 345 n n C5B C6B LMT sing 346 n n C5B O5B LMT sing 347 n n C5B H5B LMT sing 348 n n C6B O6B LMT sing 349 n n C6B "H6'2" LMT sing 350 n n C6B "H6'1" LMT sing 351 n n O1B C4' LMT sing 352 n n O2B H2O1 LMT sing 353 n n O3B H3O1 LMT sing 354 n n O4' H4O1 LMT sing 355 n n O6B H6B LMT sing 356 n n C1' C2' LMT sing 357 n n C1' O1' LMT sing 358 n n C1' O5' LMT sing 359 n n C1' H1' LMT sing 360 n n C2' C3' LMT sing 361 n n C2' O2' LMT sing 362 n n C2' H2' LMT sing 363 n n C3' C4' LMT sing 364 n n C3' O3' LMT sing 365 n n C3' H3' LMT sing 366 n n C4' C5' LMT sing 367 n n C4' H4' LMT sing 368 n n C5' C6' LMT sing 369 n n C5' O5' LMT sing 370 n n C5' H5' LMT sing 371 n n C6' O6' LMT sing 372 n n C6' H6D LMT sing 373 n n C6' H6E LMT sing 374 n n O1' C1 LMT sing 375 n n O2' H2O2 LMT sing 376 n n O3' H3O2 LMT sing 377 n n O6' H6' LMT sing 378 n n C1 C2 LMT sing 379 n n C1 H12 LMT sing 380 n n C1 H11 LMT sing 381 n n C2 C3 LMT sing 382 n n C2 H22 LMT sing 383 n n C2 H21 LMT sing 384 n n C3 C4 LMT sing 385 n n C3 H32 LMT sing 386 n n C3 H31 LMT sing 387 n n C4 C5 LMT sing 388 n n C4 H42 LMT sing 389 n n C4 H41 LMT sing 390 n n C5 C6 LMT sing 391 n n C5 H52 LMT sing 392 n n C5 H51 LMT sing 393 n n C6 C7 LMT sing 394 n n C6 H62 LMT sing 395 n n C6 H61 LMT sing 396 n n C7 C8 LMT sing 397 n n C7 H72 LMT sing 398 n n C7 H71 LMT sing 399 n n C8 C9 LMT sing 400 n n C8 H82 LMT sing 401 n n C8 H81 LMT sing 402 n n C9 C10 LMT sing 403 n n C9 H92 LMT sing 404 n n C9 H91 LMT sing 405 n n C10 C11 LMT sing 406 n n C10 H102 LMT sing 407 n n C10 H101 LMT sing 408 n n C11 C12 LMT sing 409 n n C11 H112 LMT sing 410 n n C11 H111 LMT sing 411 n n C12 H123 LMT sing 412 n n C12 H122 LMT sing 413 n n C12 H121 LMT sing 414 n n # _atom_sites.entry_id 5KYM _atom_sites.fract_transf_matrix[1][1] 0.005753 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005753 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005753 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HGX A 1 301 1 HGX HGX . D 2 HGX A 1 302 2 HGX HGX . E 2 HGX A 1 303 3 HGX HGX . F 3 DD9 A 1 304 1 DD9 GK2 . G 2 HGX B 1 301 4 HGX HGX . H 2 HGX B 1 302 5 HGX HGX . I 2 HGX B 1 303 6 HGX HGX . J 4 LMT B 1 304 1 LMT LMT . K 3 DD9 B 1 305 2 DD9 GK2 . L 5 HOH A 1 401 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . J 4 54.701 79.544 29.705 1 117.2 ? C1B LMT 304 B 1 HETATM 2 C C2B LMT . . . J 4 54.356 79.346 28.212 1 113.1 ? C2B LMT 304 B 1 HETATM 3 C C3B LMT . . . J 4 55.044 78.108 27.607 1 107.22 ? C3B LMT 304 B 1 HETATM 4 C C4B LMT . . . J 4 56.542 78.227 27.82 1 102.45 ? C4B LMT 304 B 1 HETATM 5 C C5B LMT . . . J 4 56.842 78.455 29.312 1 108.89 ? C5B LMT 304 B 1 HETATM 6 C C6B LMT . . . J 4 58.332 78.595 29.662 1 113.09 ? C6B LMT 304 B 1 HETATM 7 O O1B LMT . . . J 4 54.19 78.525 30.61 1 126.94 ? O1B LMT 304 B 1 HETATM 8 O O2B LMT . . . J 4 52.933 79.301 28.044 1 125.15 ? O2B LMT 304 B 1 HETATM 9 O O3B LMT . . . J 4 54.808 77.917 26.195 1 99.71 ? O3B LMT 304 B 1 HETATM 10 O O4' LMT . . . J 4 57.139 77.036 27.297 1 87.57 ? O4' LMT 304 B 1 HETATM 11 O O5B LMT . . . J 4 56.134 79.611 29.793 1 110.67 ? O5B LMT 304 B 1 HETATM 12 O O6B LMT . . . J 4 59.085 79.267 28.645 1 117.1 ? O6B LMT 304 B 1 HETATM 13 C C1' LMT . . . J 4 51.437 77.758 33.588 1 129.13 ? C1' LMT 304 B 1 HETATM 14 C C2' LMT . . . J 4 50.902 77.556 32.164 1 139.47 ? C2' LMT 304 B 1 HETATM 15 C C3' LMT . . . J 4 52.116 77.456 31.237 1 136.97 ? C3' LMT 304 B 1 HETATM 16 C C4' LMT . . . J 4 52.929 78.758 31.278 1 136.71 ? C4' LMT 304 B 1 HETATM 17 C C5' LMT . . . J 4 53.114 79.277 32.731 1 141.18 ? C5' LMT 304 B 1 HETATM 18 C C6' LMT . . . J 4 53.409 80.784 32.784 1 138.8 ? C6' LMT 304 B 1 HETATM 19 O O1' LMT . . . J 4 50.435 77.621 34.602 1 110.28 ? O1' LMT 304 B 1 HETATM 20 O O2' LMT . . . J 4 50.036 76.415 32.011 1 144.67 ? O2' LMT 304 B 1 HETATM 21 O O3' LMT . . . J 4 51.687 77.155 29.904 1 146.79 ? O3' LMT 304 B 1 HETATM 22 O O5' LMT . . . J 4 51.963 79.085 33.587 1 133.97 ? O5' LMT 304 B 1 HETATM 23 O O6' LMT . . . J 4 54.788 81.095 32.564 1 136.37 ? O6' LMT 304 B 1 HETATM 24 C C1 LMT . . . J 4 50.883 77.117 35.865 1 99.27 ? C1 LMT 304 B 1 HETATM 25 C C2 LMT . . . J 4 50.076 77.817 36.957 1 102.14 ? C2 LMT 304 B 1 HETATM 26 C C3 LMT . . . J 4 50.131 79.353 36.832 1 101.89 ? C3 LMT 304 B 1 HETATM 27 C C4 LMT . . . J 4 48.904 79.992 36.167 1 90.83 ? C4 LMT 304 B 1 HETATM 28 C C5 LMT . . . J 4 47.877 80.426 37.205 1 92.24 ? C5 LMT 304 B 1 HETATM 29 C C6 LMT . . . J 4 46.784 81.348 36.654 1 101.53 ? C6 LMT 304 B 1 HETATM 30 C C7 LMT . . . J 4 46.76 82.705 37.37 1 102.64 ? C7 LMT 304 B 1 HETATM 31 C C8 LMT . . . J 4 45.547 83.57 37.007 1 100.41 ? C8 LMT 304 B 1 HETATM 32 C C9 LMT . . . J 4 45.252 84.561 38.132 1 103.11 ? C9 LMT 304 B 1 HETATM 33 C C10 LMT . . . J 4 43.908 85.276 38.001 1 100.54 ? C10 LMT 304 B 1 HETATM 34 C C11 LMT . . . J 4 43.492 85.922 39.335 1 95.92 ? C11 LMT 304 B 1 HETATM 35 C C12 LMT . . . J 4 42.605 85.017 40.174 1 89.47 ? C12 LMT 304 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 35 #