data_5KYV # _model_server_result.job_id sXbdyrROpvZyDB-sUQqviA _model_server_result.datetime_utc '2024-10-19 15:27:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kyv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 5KYV # _exptl.entry_id 5KYV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 606.611 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-O-[N-(DEHYDROLUCIFERYL)-SULFAMOYL] ADENOSINE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5KYV _cell.length_a 93.078 _cell.length_b 93.078 _cell.length_c 293.645 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KYV _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H18 N8 O8 S3' _chem_comp.formula_weight 606.611 _chem_comp.id SLU _chem_comp.mon_nstd_flag . _chem_comp.name "5'-O-[N-(DEHYDROLUCIFERYL)-SULFAMOYL] ADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O39 C16 SLU doub 290 n n C16 C14 SLU sing 291 n n C16 N40 SLU sing 292 n n C14 N15 SLU sing 293 n y C14 C13 SLU doub 294 n y N15 C11 SLU doub 295 n y C13 S12 SLU sing 296 n y C13 H13 SLU sing 297 n n S12 C11 SLU sing 298 n y C11 C8 SLU sing 299 n y C8 S9 SLU sing 300 n y C8 N7 SLU doub 301 n y S9 C4 SLU sing 302 n y C4 C5 SLU sing 303 n y C4 C3 SLU doub 304 n y C5 C6 SLU doub 305 n y C5 H5 SLU sing 306 n n C6 O10 SLU sing 307 n n C6 C1 SLU sing 308 n y O10 H10 SLU sing 309 n n C3 N7 SLU sing 310 n y C3 C2 SLU sing 311 n y C2 C1 SLU doub 312 n y C2 H2 SLU sing 313 n n C1 H1 SLU sing 314 n n N40 S17 SLU sing 315 n n N40 H40 SLU sing 316 n n S17 O18 SLU doub 317 n n S17 O19 SLU doub 318 n n S17 O20 SLU sing 319 n n O20 C21 SLU sing 320 n n C21 C22 SLU sing 321 n n C21 H211 SLU sing 322 n n C21 H212 SLU sing 323 n n C22 C23 SLU sing 324 n n C22 O26 SLU sing 325 n n C22 H22 SLU sing 326 n n C23 O27 SLU sing 327 n n C23 C24 SLU sing 328 n n C23 H23 SLU sing 329 n n O27 H27 SLU sing 330 n n C24 O28 SLU sing 331 n n C24 C25 SLU sing 332 n n C24 H24 SLU sing 333 n n O28 H28 SLU sing 334 n n C25 O26 SLU sing 335 n n C25 N35 SLU sing 336 n n C25 H25 SLU sing 337 n n N35 C32 SLU sing 338 n y N35 C36 SLU sing 339 n y C32 N31 SLU sing 340 n y C32 C33 SLU doub 341 n y N31 C30 SLU doub 342 n y C30 N29 SLU sing 343 n y C30 H30 SLU sing 344 n n N29 C34 SLU doub 345 n y C33 C34 SLU sing 346 n y C33 N37 SLU sing 347 n y C34 N38 SLU sing 348 n n N38 H381 SLU sing 349 n n N38 H382 SLU sing 350 n n N37 C36 SLU doub 351 n y C36 H36 SLU sing 352 n n # _atom_sites.entry_id 5KYV _atom_sites.fract_transf_matrix[1][1] 0.010744 _atom_sites.fract_transf_matrix[1][2] 0.006203 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012406 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003405 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SLU A 1 601 998 SLU SLU . D 3 TLA A 1 602 1 TLA TLA . E 2 SLU B 1 601 999 SLU SLU . F 4 HOH A 1 701 14 HOH HOH . F 4 HOH A 2 702 62 HOH HOH . F 4 HOH A 3 703 6 HOH HOH . F 4 HOH A 4 704 47 HOH HOH . F 4 HOH A 5 705 49 HOH HOH . F 4 HOH A 6 706 8 HOH HOH . F 4 HOH A 7 707 48 HOH HOH . F 4 HOH A 8 708 4 HOH HOH . F 4 HOH A 9 709 15 HOH HOH . F 4 HOH A 10 710 43 HOH HOH . F 4 HOH A 11 711 5 HOH HOH . F 4 HOH A 12 712 7 HOH HOH . F 4 HOH A 13 713 42 HOH HOH . F 4 HOH A 14 714 45 HOH HOH . F 4 HOH A 15 715 50 HOH HOH . F 4 HOH A 16 716 16 HOH HOH . F 4 HOH A 17 717 69 HOH HOH . F 4 HOH A 18 718 30 HOH HOH . F 4 HOH A 19 719 26 HOH HOH . F 4 HOH A 20 720 12 HOH HOH . F 4 HOH A 21 721 2 HOH HOH . F 4 HOH A 22 722 10 HOH HOH . F 4 HOH A 23 723 25 HOH HOH . F 4 HOH A 24 724 27 HOH HOH . F 4 HOH A 25 725 31 HOH HOH . F 4 HOH A 26 726 1 HOH HOH . F 4 HOH A 27 727 59 HOH HOH . F 4 HOH A 28 728 24 HOH HOH . F 4 HOH A 29 729 29 HOH HOH . F 4 HOH A 30 730 60 HOH HOH . F 4 HOH A 31 731 9 HOH HOH . F 4 HOH A 32 732 46 HOH HOH . F 4 HOH A 33 733 61 HOH HOH . F 4 HOH A 34 734 41 HOH HOH . F 4 HOH A 35 735 44 HOH HOH . F 4 HOH A 36 736 13 HOH HOH . F 4 HOH A 37 737 63 HOH HOH . F 4 HOH A 38 738 58 HOH HOH . F 4 HOH A 39 739 3 HOH HOH . G 4 HOH B 1 701 57 HOH HOH . G 4 HOH B 2 702 23 HOH HOH . G 4 HOH B 3 703 28 HOH HOH . G 4 HOH B 4 704 33 HOH HOH . G 4 HOH B 5 705 68 HOH HOH . G 4 HOH B 6 706 40 HOH HOH . G 4 HOH B 7 707 53 HOH HOH . G 4 HOH B 8 708 38 HOH HOH . G 4 HOH B 9 709 70 HOH HOH . G 4 HOH B 10 710 17 HOH HOH . G 4 HOH B 11 711 52 HOH HOH . G 4 HOH B 12 712 19 HOH HOH . G 4 HOH B 13 713 73 HOH HOH . G 4 HOH B 14 714 20 HOH HOH . G 4 HOH B 15 715 51 HOH HOH . G 4 HOH B 16 716 37 HOH HOH . G 4 HOH B 17 717 55 HOH HOH . G 4 HOH B 18 718 18 HOH HOH . G 4 HOH B 19 719 32 HOH HOH . G 4 HOH B 20 720 22 HOH HOH . G 4 HOH B 21 721 36 HOH HOH . G 4 HOH B 22 722 72 HOH HOH . G 4 HOH B 23 723 54 HOH HOH . G 4 HOH B 24 724 21 HOH HOH . G 4 HOH B 25 725 56 HOH HOH . G 4 HOH B 26 726 35 HOH HOH . G 4 HOH B 27 727 11 HOH HOH . G 4 HOH B 28 728 39 HOH HOH . G 4 HOH B 29 729 74 HOH HOH . G 4 HOH B 30 730 71 HOH HOH . G 4 HOH B 31 731 67 HOH HOH . G 4 HOH B 32 732 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O39 SLU . . . E 2 48.103 -16.019 7.289 1 40.15 ? O39 SLU 601 B 1 HETATM 2 C C16 SLU . . . E 2 49.179 -16.581 7.324 1 40.58 ? C16 SLU 601 B 1 HETATM 3 C C14 SLU . . . E 2 49.785 -17.118 6.115 1 46.62 ? C14 SLU 601 B 1 HETATM 4 N N15 SLU . . . E 2 49.123 -17.164 4.976 1 45.67 ? N15 SLU 601 B 1 HETATM 5 C C13 SLU . . . E 2 51.103 -17.543 6.166 1 43.95 ? C13 SLU 601 B 1 HETATM 6 S S12 SLU . . . E 2 51.376 -18.034 4.52 1 45.07 ? S12 SLU 601 B 1 HETATM 7 C C11 SLU . . . E 2 49.747 -17.654 3.921 1 44.1 ? C11 SLU 601 B 1 HETATM 8 C C8 SLU . . . E 2 49.254 -17.774 2.556 1 38.8 ? C8 SLU 601 B 1 HETATM 9 S S9 SLU . . . E 2 47.609 -17.487 1.959 1 37.79 ? S9 SLU 601 B 1 HETATM 10 C C4 SLU . . . E 2 47.984 -17.784 0.24 1 40.85 ? C4 SLU 601 B 1 HETATM 11 C C5 SLU . . . E 2 47.284 -17.787 -0.928 1 38.33 ? C5 SLU 601 B 1 HETATM 12 C C6 SLU . . . E 2 47.958 -18.026 -2.113 1 42.23 ? C6 SLU 601 B 1 HETATM 13 O O10 SLU . . . E 2 47.323 -17.895 -3.303 1 54.93 ? O10 SLU 601 B 1 HETATM 14 C C3 SLU . . . E 2 49.366 -18.076 0.271 1 41.61 ? C3 SLU 601 B 1 HETATM 15 N N7 SLU . . . E 2 49.933 -18.039 1.478 1 38.91 ? N7 SLU 601 B 1 HETATM 16 C C2 SLU . . . E 2 49.994 -18.381 -0.958 1 38.63 ? C2 SLU 601 B 1 HETATM 17 C C1 SLU . . . E 2 49.288 -18.409 -2.104 1 34.1 ? C1 SLU 601 B 1 HETATM 18 N N40 SLU . . . E 2 49.903 -16.707 8.445 1 45.09 ? N40 SLU 601 B 1 HETATM 19 S S17 SLU . . . E 2 49.337 -16.103 9.865 1 46.29 ? S17 SLU 601 B 1 HETATM 20 O O18 SLU . . . E 2 49.504 -14.706 9.682 1 55.14 ? O18 SLU 601 B 1 HETATM 21 O O19 SLU . . . E 2 49.93 -16.882 10.873 1 39.91 ? O19 SLU 601 B 1 HETATM 22 O O20 SLU . . . E 2 47.825 -16.281 9.936 1 45.29 ? O20 SLU 601 B 1 HETATM 23 C C21 SLU . . . E 2 47.552 -17.637 10.265 1 40.02 ? C21 SLU 601 B 1 HETATM 24 C C22 SLU . . . E 2 46.023 -17.789 10.391 1 46.4 ? C22 SLU 601 B 1 HETATM 25 C C23 SLU . . . E 2 45.502 -19.238 10.249 1 50.63 ? C23 SLU 601 B 1 HETATM 26 O O27 SLU . . . E 2 45.643 -19.972 11.461 1 49.99 ? O27 SLU 601 B 1 HETATM 27 C C24 SLU . . . E 2 44.008 -19.011 9.914 1 48.35 ? C24 SLU 601 B 1 HETATM 28 O O28 SLU . . . E 2 43.214 -18.846 11.096 1 50.62 ? O28 SLU 601 B 1 HETATM 29 C C25 SLU . . . E 2 44.04 -17.7 9.11 1 44.5 ? C25 SLU 601 B 1 HETATM 30 O O26 SLU . . . E 2 45.355 -17.093 9.314 1 44.45 ? O26 SLU 601 B 1 HETATM 31 N N35 SLU . . . E 2 43.855 -17.931 7.664 1 45.25 ? N35 SLU 601 B 1 HETATM 32 C C32 SLU . . . E 2 42.693 -18.19 6.98 1 43.74 ? C32 SLU 601 B 1 HETATM 33 N N31 SLU . . . E 2 41.413 -18.359 7.315 1 48.64 ? N31 SLU 601 B 1 HETATM 34 C C30 SLU . . . E 2 40.501 -18.621 6.391 1 47.51 ? C30 SLU 601 B 1 HETATM 35 N N29 SLU . . . E 2 40.799 -18.726 5.101 1 46.66 ? N29 SLU 601 B 1 HETATM 36 C C33 SLU . . . E 2 43.057 -18.289 5.616 1 45.07 ? C33 SLU 601 B 1 HETATM 37 C C34 SLU . . . E 2 42.052 -18.57 4.678 1 42.8 ? C34 SLU 601 B 1 HETATM 38 N N38 SLU . . . E 2 42.374 -18.682 3.344 1 45.71 ? N38 SLU 601 B 1 HETATM 39 N N37 SLU . . . E 2 44.397 -18.092 5.525 1 41.5 ? N37 SLU 601 B 1 HETATM 40 C C36 SLU . . . E 2 44.857 -17.879 6.724 1 46.01 ? C36 SLU 601 B 1 # _model_server_stats.io_time_ms 83 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 40 #