data_5KZ0 # _model_server_result.job_id HIOY2CmtOnGwMulXyg5Xqg _model_server_result.datetime_utc '2024-11-04 22:18:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kz0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 5KZ0 # _exptl.entry_id 5KZ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 397.446 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[(1~{R})-1-[2-azanyl-5-(1,3-dimethylpyrazol-4-yl)pyridin-3-yl]oxyethyl]-4-fluoranyl-~{N},~{N}-dimethyl-benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KZ0 _cell.length_a 51.74 _cell.length_b 57.07 _cell.length_c 104.58 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KZ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H24 F N5 O2' _chem_comp.formula_weight 397.446 _chem_comp.id 6YL _chem_comp.mon_nstd_flag . _chem_comp.name 2-[(1~{R})-1-[2-azanyl-5-(1,3-dimethylpyrazol-4-yl)pyridin-3-yl]oxyethyl]-4-fluoranyl-~{N},~{N}-dimethyl-benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 N20 6YL sing 1 n n C29 N26 6YL sing 2 n n N20 C22 6YL sing 3 n n N20 C17 6YL sing 4 n n O19 C17 6YL doub 5 n n N26 N25 6YL sing 6 n y N26 C27 6YL sing 7 n y N25 C24 6YL doub 8 n y C17 C10 6YL sing 9 n n C27 C23 6YL doub 10 n y C24 C28 6YL sing 11 n n C24 C23 6YL sing 12 n y C23 C5 6YL sing 13 n n C10 C11 6YL doub 14 n y C10 C9 6YL sing 15 n y C15 C8 6YL sing 16 n n C8 C9 6YL sing 17 n n C8 O7 6YL sing 18 n n C6 C5 6YL doub 19 n y C6 C1 6YL sing 20 n y C5 C4 6YL sing 21 n y C11 C12 6YL sing 22 n y C9 C14 6YL doub 23 n y O7 C1 6YL sing 24 n n C1 C2 6YL doub 25 n y C4 N3 6YL doub 26 n y C2 N3 6YL sing 27 n y C2 N18 6YL sing 28 n n C12 C13 6YL doub 29 n y C14 C13 6YL sing 30 n y C13 F16 6YL sing 31 n n C11 H1 6YL sing 32 n n C12 H2 6YL sing 33 n n C6 H3 6YL sing 34 n n C14 H4 6YL sing 35 n n C4 H5 6YL sing 36 n n C27 H6 6YL sing 37 n n C28 H7 6YL sing 38 n n C28 H8 6YL sing 39 n n C28 H9 6YL sing 40 n n C15 H10 6YL sing 41 n n C15 H11 6YL sing 42 n n C15 H12 6YL sing 43 n n C29 H13 6YL sing 44 n n C29 H14 6YL sing 45 n n C29 H15 6YL sing 46 n n C21 H16 6YL sing 47 n n C21 H17 6YL sing 48 n n C21 H18 6YL sing 49 n n C22 H19 6YL sing 50 n n C22 H20 6YL sing 51 n n C22 H21 6YL sing 52 n n C8 H22 6YL sing 53 n n N18 H23 6YL sing 54 n n N18 H24 6YL sing 55 n n # _atom_sites.entry_id 5KZ0 _atom_sites.fract_transf_matrix[1][1] 0.019327 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017522 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009562 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6YL A 1 1501 1 6YL UNL . C 3 HOH A 1 1601 11 HOH WAT . C 3 HOH A 2 1602 140 HOH WAT . C 3 HOH A 3 1603 7 HOH WAT . C 3 HOH A 4 1604 121 HOH WAT . C 3 HOH A 5 1605 297 HOH WAT . C 3 HOH A 6 1606 207 HOH WAT . C 3 HOH A 7 1607 127 HOH WAT . C 3 HOH A 8 1608 60 HOH WAT . C 3 HOH A 9 1609 59 HOH WAT . C 3 HOH A 10 1610 1 HOH WAT . C 3 HOH A 11 1611 180 HOH WAT . C 3 HOH A 12 1612 4 HOH WAT . C 3 HOH A 13 1613 139 HOH WAT . C 3 HOH A 14 1614 280 HOH WAT . C 3 HOH A 15 1615 292 HOH WAT . C 3 HOH A 16 1616 137 HOH WAT . C 3 HOH A 17 1617 236 HOH WAT . C 3 HOH A 18 1618 31 HOH WAT . C 3 HOH A 19 1619 24 HOH WAT . C 3 HOH A 20 1620 185 HOH WAT . C 3 HOH A 21 1621 263 HOH WAT . C 3 HOH A 22 1622 243 HOH WAT . C 3 HOH A 23 1623 200 HOH WAT . C 3 HOH A 24 1624 19 HOH WAT . C 3 HOH A 25 1625 175 HOH WAT . C 3 HOH A 26 1626 235 HOH WAT . C 3 HOH A 27 1627 194 HOH WAT . C 3 HOH A 28 1628 18 HOH WAT . C 3 HOH A 29 1629 160 HOH WAT . C 3 HOH A 30 1630 23 HOH WAT . C 3 HOH A 31 1631 287 HOH WAT . C 3 HOH A 32 1632 307 HOH WAT . C 3 HOH A 33 1633 6 HOH WAT . C 3 HOH A 34 1634 103 HOH WAT . C 3 HOH A 35 1635 78 HOH WAT . C 3 HOH A 36 1636 110 HOH WAT . C 3 HOH A 37 1637 211 HOH WAT . C 3 HOH A 38 1638 178 HOH WAT . C 3 HOH A 39 1639 303 HOH WAT . C 3 HOH A 40 1640 120 HOH WAT . C 3 HOH A 41 1641 114 HOH WAT . C 3 HOH A 42 1642 3 HOH WAT . C 3 HOH A 43 1643 268 HOH WAT . C 3 HOH A 44 1644 16 HOH WAT . C 3 HOH A 45 1645 204 HOH WAT . C 3 HOH A 46 1646 95 HOH WAT . C 3 HOH A 47 1647 51 HOH WAT . C 3 HOH A 48 1648 32 HOH WAT . C 3 HOH A 49 1649 35 HOH WAT . C 3 HOH A 50 1650 179 HOH WAT . C 3 HOH A 51 1651 75 HOH WAT . C 3 HOH A 52 1652 240 HOH WAT . C 3 HOH A 53 1653 55 HOH WAT . C 3 HOH A 54 1654 212 HOH WAT . C 3 HOH A 55 1655 20 HOH WAT . C 3 HOH A 56 1656 278 HOH WAT . C 3 HOH A 57 1657 99 HOH WAT . C 3 HOH A 58 1658 306 HOH WAT . C 3 HOH A 59 1659 227 HOH WAT . C 3 HOH A 60 1660 262 HOH WAT . C 3 HOH A 61 1661 28 HOH WAT . C 3 HOH A 62 1662 15 HOH WAT . C 3 HOH A 63 1663 96 HOH WAT . C 3 HOH A 64 1664 57 HOH WAT . C 3 HOH A 65 1665 9 HOH WAT . C 3 HOH A 66 1666 5 HOH WAT . C 3 HOH A 67 1667 256 HOH WAT . C 3 HOH A 68 1668 222 HOH WAT . C 3 HOH A 69 1669 109 HOH WAT . C 3 HOH A 70 1670 162 HOH WAT . C 3 HOH A 71 1671 229 HOH WAT . C 3 HOH A 72 1672 97 HOH WAT . C 3 HOH A 73 1673 193 HOH WAT . C 3 HOH A 74 1674 66 HOH WAT . C 3 HOH A 75 1675 142 HOH WAT . C 3 HOH A 76 1676 25 HOH WAT . C 3 HOH A 77 1677 123 HOH WAT . C 3 HOH A 78 1678 136 HOH WAT . C 3 HOH A 79 1679 131 HOH WAT . C 3 HOH A 80 1680 8 HOH WAT . C 3 HOH A 81 1681 181 HOH WAT . C 3 HOH A 82 1682 46 HOH WAT . C 3 HOH A 83 1683 158 HOH WAT . C 3 HOH A 84 1684 250 HOH WAT . C 3 HOH A 85 1685 183 HOH WAT . C 3 HOH A 86 1686 115 HOH WAT . C 3 HOH A 87 1687 244 HOH WAT . C 3 HOH A 88 1688 188 HOH WAT . C 3 HOH A 89 1689 101 HOH WAT . C 3 HOH A 90 1690 100 HOH WAT . C 3 HOH A 91 1691 276 HOH WAT . C 3 HOH A 92 1692 13 HOH WAT . C 3 HOH A 93 1693 205 HOH WAT . C 3 HOH A 94 1694 83 HOH WAT . C 3 HOH A 95 1695 291 HOH WAT . C 3 HOH A 96 1696 76 HOH WAT . C 3 HOH A 97 1697 195 HOH WAT . C 3 HOH A 98 1698 29 HOH WAT . C 3 HOH A 99 1699 173 HOH WAT . C 3 HOH A 100 1700 45 HOH WAT . C 3 HOH A 101 1701 104 HOH WAT . C 3 HOH A 102 1702 269 HOH WAT . C 3 HOH A 103 1703 14 HOH WAT . C 3 HOH A 104 1704 90 HOH WAT . C 3 HOH A 105 1705 296 HOH WAT . C 3 HOH A 106 1706 74 HOH WAT . C 3 HOH A 107 1707 149 HOH WAT . C 3 HOH A 108 1708 26 HOH WAT . C 3 HOH A 109 1709 98 HOH WAT . C 3 HOH A 110 1710 301 HOH WAT . C 3 HOH A 111 1711 72 HOH WAT . C 3 HOH A 112 1712 132 HOH WAT . C 3 HOH A 113 1713 108 HOH WAT . C 3 HOH A 114 1714 37 HOH WAT . C 3 HOH A 115 1715 30 HOH WAT . C 3 HOH A 116 1716 62 HOH WAT . C 3 HOH A 117 1717 186 HOH WAT . C 3 HOH A 118 1718 40 HOH WAT . C 3 HOH A 119 1719 208 HOH WAT . C 3 HOH A 120 1720 305 HOH WAT . C 3 HOH A 121 1721 260 HOH WAT . C 3 HOH A 122 1722 248 HOH WAT . C 3 HOH A 123 1723 63 HOH WAT . C 3 HOH A 124 1724 219 HOH WAT . C 3 HOH A 125 1725 58 HOH WAT . C 3 HOH A 126 1726 215 HOH WAT . C 3 HOH A 127 1727 191 HOH WAT . C 3 HOH A 128 1728 10 HOH WAT . C 3 HOH A 129 1729 82 HOH WAT . C 3 HOH A 130 1730 198 HOH WAT . C 3 HOH A 131 1731 106 HOH WAT . C 3 HOH A 132 1732 214 HOH WAT . C 3 HOH A 133 1733 141 HOH WAT . C 3 HOH A 134 1734 223 HOH WAT . C 3 HOH A 135 1735 184 HOH WAT . C 3 HOH A 136 1736 266 HOH WAT . C 3 HOH A 137 1737 234 HOH WAT . C 3 HOH A 138 1738 39 HOH WAT . C 3 HOH A 139 1739 251 HOH WAT . C 3 HOH A 140 1740 69 HOH WAT . C 3 HOH A 141 1741 12 HOH WAT . C 3 HOH A 142 1742 231 HOH WAT . C 3 HOH A 143 1743 138 HOH WAT . C 3 HOH A 144 1744 34 HOH WAT . C 3 HOH A 145 1745 257 HOH WAT . C 3 HOH A 146 1746 111 HOH WAT . C 3 HOH A 147 1747 247 HOH WAT . C 3 HOH A 148 1748 21 HOH WAT . C 3 HOH A 149 1749 300 HOH WAT . C 3 HOH A 150 1750 93 HOH WAT . C 3 HOH A 151 1751 164 HOH WAT . C 3 HOH A 152 1752 284 HOH WAT . C 3 HOH A 153 1753 17 HOH WAT . C 3 HOH A 154 1754 242 HOH WAT . C 3 HOH A 155 1755 252 HOH WAT . C 3 HOH A 156 1756 255 HOH WAT . C 3 HOH A 157 1757 290 HOH WAT . C 3 HOH A 158 1758 88 HOH WAT . C 3 HOH A 159 1759 176 HOH WAT . C 3 HOH A 160 1760 182 HOH WAT . C 3 HOH A 161 1761 42 HOH WAT . C 3 HOH A 162 1762 148 HOH WAT . C 3 HOH A 163 1763 209 HOH WAT . C 3 HOH A 164 1764 116 HOH WAT . C 3 HOH A 165 1765 36 HOH WAT . C 3 HOH A 166 1766 199 HOH WAT . C 3 HOH A 167 1767 233 HOH WAT . C 3 HOH A 168 1768 274 HOH WAT . C 3 HOH A 169 1769 201 HOH WAT . C 3 HOH A 170 1770 22 HOH WAT . C 3 HOH A 171 1771 294 HOH WAT . C 3 HOH A 172 1772 275 HOH WAT . C 3 HOH A 173 1773 210 HOH WAT . C 3 HOH A 174 1774 285 HOH WAT . C 3 HOH A 175 1775 304 HOH WAT . C 3 HOH A 176 1776 197 HOH WAT . C 3 HOH A 177 1777 196 HOH WAT . C 3 HOH A 178 1778 273 HOH WAT . C 3 HOH A 179 1779 264 HOH WAT . C 3 HOH A 180 1780 225 HOH WAT . C 3 HOH A 181 1781 202 HOH WAT . C 3 HOH A 182 1782 230 HOH WAT . C 3 HOH A 183 1783 279 HOH WAT . C 3 HOH A 184 1784 213 HOH WAT . C 3 HOH A 185 1785 261 HOH WAT . C 3 HOH A 186 1786 302 HOH WAT . C 3 HOH A 187 1787 68 HOH WAT . C 3 HOH A 188 1788 33 HOH WAT . C 3 HOH A 189 1789 126 HOH WAT . C 3 HOH A 190 1790 253 HOH WAT . C 3 HOH A 191 1791 43 HOH WAT . C 3 HOH A 192 1792 289 HOH WAT . C 3 HOH A 193 1793 187 HOH WAT . C 3 HOH A 194 1794 177 HOH WAT . C 3 HOH A 195 1795 86 HOH WAT . C 3 HOH A 196 1796 134 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 6YL . . . B 2 34.782 46.375 8.759 1 21.58 ? C11 6YL 1501 A 1 HETATM 2 C C12 6YL . . . B 2 35.042 46.226 10.136 1 20.26 ? C12 6YL 1501 A 1 HETATM 3 C C6 6YL . . . B 2 29.866 45.472 8.311 1 22.28 ? C6 6YL 1501 A 1 HETATM 4 C C14 6YL . . . B 2 33.482 44.336 10.236 1 19.43 ? C14 6YL 1501 A 1 HETATM 5 C C4 6YL . . . B 2 27.753 45.974 9.315 1 23.1 ? C4 6YL 1501 A 1 HETATM 6 C C27 6YL . . . B 2 29.821 48.196 7.041 1 27.92 ? C27 6YL 1501 A 1 HETATM 7 C C5 6YL . . . B 2 28.761 46.371 8.413 1 22.81 ? C5 6YL 1501 A 1 HETATM 8 C C23 6YL . . . B 2 28.699 47.626 7.627 1 26.01 ? C23 6YL 1501 A 1 HETATM 9 C C10 6YL . . . B 2 33.862 45.497 8.102 1 23 ? C10 6YL 1501 A 1 HETATM 10 C C9 6YL . . . B 2 33.181 44.444 8.836 1 19.98 ? C9 6YL 1501 A 1 HETATM 11 C C1 6YL . . . B 2 29.951 44.262 9.06 1 20.46 ? C1 6YL 1501 A 1 HETATM 12 C C13 6YL . . . B 2 34.393 45.211 10.858 1 19.78 ? C13 6YL 1501 A 1 HETATM 13 C C24 6YL . . . B 2 27.642 48.551 7.253 1 26.36 ? C24 6YL 1501 A 1 HETATM 14 C C2 6YL . . . B 2 28.874 43.965 9.937 1 21.95 ? C2 6YL 1501 A 1 HETATM 15 C C17 6YL . . . B 2 33.687 45.774 6.643 1 23.63 ? C17 6YL 1501 A 1 HETATM 16 C C28 6YL . . . B 2 26.186 48.544 7.552 1 26.36 ? C28 6YL 1501 A 1 HETATM 17 C C15 6YL . . . B 2 32.738 42.031 8.153 1 17.13 ? C15 6YL 1501 A 1 HETATM 18 C C29 6YL . . . B 2 30.259 50.233 5.663 1 32.37 ? C29 6YL 1501 A 1 HETATM 19 C C21 6YL . . . B 2 34.341 45.381 4.279 1 24.8 ? C21 6YL 1501 A 1 HETATM 20 C C22 6YL . . . B 2 35.544 44.091 5.994 1 24.87 ? C22 6YL 1501 A 1 HETATM 21 C C8 6YL . . . B 2 32.167 43.455 8.223 1 18.39 ? C8 6YL 1501 A 1 HETATM 22 N N3 6YL . . . B 2 27.789 44.816 10.059 1 22.44 ? N3 6YL 1501 A 1 HETATM 23 N N25 6YL . . . B 2 28.106 49.566 6.517 1 29.1 ? N25 6YL 1501 A 1 HETATM 24 N N26 6YL . . . B 2 29.419 49.322 6.408 1 31.11 ? N26 6YL 1501 A 1 HETATM 25 N N18 6YL . . . B 2 28.899 42.781 10.709 1 18.66 ? N18 6YL 1501 A 1 HETATM 26 N N20 6YL . . . B 2 34.506 45.089 5.699 1 23.26 ? N20 6YL 1501 A 1 HETATM 27 O O19 6YL . . . B 2 32.826 46.608 6.355 1 24.8 ? O19 6YL 1501 A 1 HETATM 28 O O7 6YL . . . B 2 30.977 43.33 9.04 1 18.43 ? O7 6YL 1501 A 1 HETATM 29 F F16 6YL . . . B 2 34.639 45.07 12.156 1 21.05 ? F16 6YL 1501 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #