data_5KZ7 # _model_server_result.job_id dHjQv9LGNnJ0bhXX5VlzXQ _model_server_result.datetime_utc '2024-12-18 01:47:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kz7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5KZ7 # _exptl.entry_id 5KZ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 377.415 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-[(1~{S})-1-(4-fluorophenyl)ethyl]-5,5-dimethyl-2-(pyridin-3-ylamino)pyrrolo[2,3-d]pyrimidin-6-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5KZ7 _cell.length_a 119.35 _cell.length_b 119.35 _cell.length_c 98.738 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KZ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H20 F N5 O' _chem_comp.formula_weight 377.415 _chem_comp.id 6Z2 _chem_comp.mon_nstd_flag . _chem_comp.name 7-[(1~{S})-1-(4-fluorophenyl)ethyl]-5,5-dimethyl-2-(pyridin-3-ylamino)pyrrolo[2,3-d]pyrimidin-6-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F C21 6Z2 sing 1 n n C22 C21 6Z2 doub 2 n y C22 C23 6Z2 sing 3 n y C21 C20 6Z2 sing 4 n y C23 C18 6Z2 doub 5 n y C10 C9 6Z2 doub 6 n y C10 C11 6Z2 sing 7 n y C9 N8 6Z2 sing 8 n y C20 C19 6Z2 doub 9 n y C18 C19 6Z2 sing 10 n y C18 C17 6Z2 sing 11 n n C24 C17 6Z2 sing 12 n n N8 C7 6Z2 doub 13 n y C11 C6 6Z2 doub 14 n y C17 N12 6Z2 sing 15 n n C7 C6 6Z2 sing 16 n y C6 N5 6Z2 sing 17 n n N12 C2 6Z2 sing 18 n n N12 C14 6Z2 sing 19 n n O C14 6Z2 doub 20 n n N1 C2 6Z2 doub 21 n y N1 C 6Z2 sing 22 n y C2 C3 6Z2 sing 23 n y C14 C13 6Z2 sing 24 n n N5 C 6Z2 sing 25 n n C N 6Z2 doub 26 n y C3 C13 6Z2 sing 27 n n C3 C4 6Z2 doub 28 n y C13 C15 6Z2 sing 29 n n C13 C16 6Z2 sing 30 n n N C4 6Z2 sing 31 n y C4 H1 6Z2 sing 32 n n C11 H2 6Z2 sing 33 n n C7 H3 6Z2 sing 34 n n N5 H4 6Z2 sing 35 n n C9 H5 6Z2 sing 36 n n C10 H6 6Z2 sing 37 n n C15 H7 6Z2 sing 38 n n C15 H8 6Z2 sing 39 n n C15 H9 6Z2 sing 40 n n C16 H10 6Z2 sing 41 n n C16 H11 6Z2 sing 42 n n C16 H12 6Z2 sing 43 n n C17 H13 6Z2 sing 44 n n C19 H14 6Z2 sing 45 n n C20 H15 6Z2 sing 46 n n C22 H16 6Z2 sing 47 n n C23 H17 6Z2 sing 48 n n C24 H18 6Z2 sing 49 n n C24 H19 6Z2 sing 50 n n C24 H20 6Z2 sing 51 n n # _atom_sites.entry_id 5KZ7 _atom_sites.fract_transf_matrix[1][1] 0.008379 _atom_sites.fract_transf_matrix[1][2] 0.004837 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009675 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010128 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6Z2 A 1 401 1 6Z2 263 . D 2 6Z2 B 1 401 1 6Z2 263 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 6Z2 . . . C 2 42.935 32.488 37.184 1 52.5 ? C4 6Z2 401 A 1 HETATM 2 C C14 6Z2 . . . C 2 40.214 33.319 34.967 1 52.46 ? C14 6Z2 401 A 1 HETATM 3 C C6 6Z2 . . . C 2 46.393 31.996 33.863 1 52.53 ? C6 6Z2 401 A 1 HETATM 4 C C11 6Z2 . . . C 2 45.756 31.702 32.642 1 51.82 ? C11 6Z2 401 A 1 HETATM 5 C C7 6Z2 . . . C 2 47.753 32.326 33.761 1 52.26 ? C7 6Z2 401 A 1 HETATM 6 C C13 6Z2 . . . C 2 40.553 33.1 36.313 1 52.4 ? C13 6Z2 401 A 1 HETATM 7 N N1 6Z2 . . . C 2 43.649 32.574 34.568 1 52.61 ? N1 6Z2 401 A 1 HETATM 8 N N 6Z2 . . . C 2 44.228 32.246 36.834 1 52.53 ? N 6Z2 401 A 1 HETATM 9 C C 6Z2 . . . C 2 44.562 32.288 35.524 1 52.55 ? C 6Z2 401 A 1 HETATM 10 C C2 6Z2 . . . C 2 42.368 32.823 34.945 1 52.69 ? C2 6Z2 401 A 1 HETATM 11 C C3 6Z2 . . . C 2 41.931 32.816 36.256 1 52.49 ? C3 6Z2 401 A 1 HETATM 12 N N5 6Z2 . . . C 2 45.808 32.012 35.081 1 52.55 ? N5 6Z2 401 A 1 HETATM 13 N N8 6Z2 . . . C 2 48.471 32.365 32.605 1 51.55 ? N8 6Z2 401 A 1 HETATM 14 C C9 6Z2 . . . C 2 47.788 32.076 31.462 1 51.7 ? C9 6Z2 401 A 1 HETATM 15 C C10 6Z2 . . . C 2 46.433 31.734 31.428 1 51.44 ? C10 6Z2 401 A 1 HETATM 16 N N12 6Z2 . . . C 2 41.305 33.166 34.175 1 52.54 ? N12 6Z2 401 A 1 HETATM 17 C C15 6Z2 . . . C 2 39.772 31.916 36.862 1 51.98 ? C15 6Z2 401 A 1 HETATM 18 C C16 6Z2 . . . C 2 40.219 34.352 37.1 1 52.25 ? C16 6Z2 401 A 1 HETATM 19 O O 6Z2 . . . C 2 39.002 33.634 34.534 1 52.54 ? O 6Z2 401 A 1 HETATM 20 C C17 6Z2 . . . C 2 41.331 33.353 32.708 1 52.78 ? C17 6Z2 401 A 1 HETATM 21 C C18 6Z2 . . . C 2 41.517 32.065 31.96 1 53.5 ? C18 6Z2 401 A 1 HETATM 22 C C19 6Z2 . . . C 2 40.838 30.937 32.446 1 53.69 ? C19 6Z2 401 A 1 HETATM 23 C C20 6Z2 . . . C 2 40.935 29.706 31.796 1 53.88 ? C20 6Z2 401 A 1 HETATM 24 C C21 6Z2 . . . C 2 41.718 29.603 30.632 1 53.97 ? C21 6Z2 401 A 1 HETATM 25 C C22 6Z2 . . . C 2 42.393 30.732 30.124 1 54.12 ? C22 6Z2 401 A 1 HETATM 26 C C23 6Z2 . . . C 2 42.289 31.959 30.792 1 53.88 ? C23 6Z2 401 A 1 HETATM 27 C C24 6Z2 . . . C 2 42.137 34.569 32.222 1 52.27 ? C24 6Z2 401 A 1 HETATM 28 F F 6Z2 . . . C 2 41.835 28.407 30.008 1 54.42 ? F 6Z2 401 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 28 #