data_5KZ8 # _model_server_result.job_id Hln0WHQpSYEYjfrX4ryz5Q _model_server_result.datetime_utc '2024-11-15 03:55:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kz8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5KZ8 # _exptl.entry_id 5KZ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.431 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,5-dimethyl-7-[(1~{S})-4-oxidanyl-1~{H}-inden-1-yl]-2-phenylazanyl-pyrrolo[2,3-d]pyrimidin-6-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5KZ8 _cell.length_a 120.416 _cell.length_b 120.416 _cell.length_c 99.457 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KZ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C23 H20 N4 O2' _chem_comp.formula_weight 384.431 _chem_comp.id 6Z5 _chem_comp.mon_nstd_flag . _chem_comp.name 5,5-dimethyl-7-[(1~{S})-4-oxidanyl-1~{H}-inden-1-yl]-2-phenylazanyl-pyrrolo[2,3-d]pyrimidin-6-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O26 C22 6Z5 sing 1 n n C22 C23 6Z5 doub 2 n y C22 C20 6Z5 sing 3 n y C23 C24 6Z5 sing 4 n y C20 C19 6Z5 sing 5 n n C20 C21 6Z5 doub 6 n y C19 C18 6Z5 doub 7 n n C9 C10 6Z5 doub 8 n y C9 C8 6Z5 sing 9 n y C24 C25 6Z5 doub 10 n y C10 C11 6Z5 sing 11 n y C21 C25 6Z5 sing 12 n y C21 C17 6Z5 sing 13 n n C8 C7 6Z5 doub 14 n y C18 C17 6Z5 sing 15 n n C11 C6 6Z5 doub 16 n y C17 N12 6Z5 sing 17 n n C7 C6 6Z5 sing 18 n y C6 N5 6Z5 sing 19 n n N12 C4 6Z5 sing 20 n n N12 C13 6Z5 sing 21 n n N3 C4 6Z5 doub 22 n y N3 C2 6Z5 sing 23 n y O C13 6Z5 doub 24 n n C4 C 6Z5 sing 25 n y N5 C2 6Z5 sing 26 n n C13 C14 6Z5 sing 27 n n C2 N 6Z5 doub 28 n y C C14 6Z5 sing 29 n n C C1 6Z5 doub 30 n y C14 C16 6Z5 sing 31 n n C14 C15 6Z5 sing 32 n n N C1 6Z5 sing 33 n y C7 H1 6Z5 sing 34 n n C9 H2 6Z5 sing 35 n n C10 H3 6Z5 sing 36 n n C11 H4 6Z5 sing 37 n n C15 H5 6Z5 sing 38 n n C15 H6 6Z5 sing 39 n n C15 H7 6Z5 sing 40 n n C18 H8 6Z5 sing 41 n n C1 H9 6Z5 sing 42 n n N5 H10 6Z5 sing 43 n n C8 H11 6Z5 sing 44 n n C16 H12 6Z5 sing 45 n n C16 H13 6Z5 sing 46 n n C16 H14 6Z5 sing 47 n n C17 H15 6Z5 sing 48 n n C19 H16 6Z5 sing 49 n n C23 H17 6Z5 sing 50 n n C24 H18 6Z5 sing 51 n n C25 H19 6Z5 sing 52 n n O26 H20 6Z5 sing 53 n n # _atom_sites.entry_id 5KZ8 _atom_sites.fract_transf_matrix[1][1] 0.008305 _atom_sites.fract_transf_matrix[1][2] 0.004795 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009589 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010055 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6Z5 A 1 401 1 6Z5 MRK . D 2 6Z5 B 1 401 1 6Z5 MRK . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 6Z5 . . . C 2 45.042 32.243 35.557 1 53.87 ? C2 6Z5 401 A 1 HETATM 2 C C7 6Z5 . . . C 2 48.216 32.347 33.659 1 50.37 ? C7 6Z5 401 A 1 HETATM 3 C C9 6Z5 . . . C 2 47.981 32.165 31.284 1 50.87 ? C9 6Z5 401 A 1 HETATM 4 C C10 6Z5 . . . C 2 46.645 31.864 31.417 1 48.81 ? C10 6Z5 401 A 1 HETATM 5 C C11 6Z5 . . . C 2 46.101 31.805 32.679 1 51.4 ? C11 6Z5 401 A 1 HETATM 6 C C13 6Z5 . . . C 2 40.662 33.319 35.291 1 54.7 ? C13 6Z5 401 A 1 HETATM 7 C C15 6Z5 . . . C 2 40.922 34.213 37.59 1 56.05 ? C15 6Z5 401 A 1 HETATM 8 C C18 6Z5 . . . C 2 42.691 34.517 32.551 1 59.73 ? C18 6Z5 401 A 1 HETATM 9 C C20 6Z5 . . . C 2 42.841 32.617 31.177 1 60.46 ? C20 6Z5 401 A 1 HETATM 10 C C21 6Z5 . . . C 2 41.921 32.324 32.145 1 60.69 ? C21 6Z5 401 A 1 HETATM 11 C C22 6Z5 . . . C 2 43.198 31.643 30.271 1 60.25 ? C22 6Z5 401 A 1 HETATM 12 C C 6Z5 . . . C 2 42.577 32.706 36.459 1 53.87 ? C 6Z5 401 A 1 HETATM 13 C C1 6Z5 . . . C 2 43.598 32.4 37.329 1 53.42 ? C1 6Z5 401 A 1 HETATM 14 N N 6Z5 . . . C 2 44.839 32.164 36.882 1 53.69 ? N 6Z5 401 A 1 HETATM 15 N N3 6Z5 . . . C 2 44.109 32.538 34.643 1 52.43 ? N3 6Z5 401 A 1 HETATM 16 C C4 6Z5 . . . C 2 42.888 32.761 35.132 1 53.55 ? C4 6Z5 401 A 1 HETATM 17 N N5 6Z5 . . . C 2 46.352 31.993 35.133 1 55 ? N5 6Z5 401 A 1 HETATM 18 C C6 6Z5 . . . C 2 46.87 32.051 33.812 1 53.83 ? C6 6Z5 401 A 1 HETATM 19 C C8 6Z5 . . . C 2 48.766 32.403 32.397 1 50.77 ? C8 6Z5 401 A 1 HETATM 20 N N12 6Z5 . . . C 2 41.716 33.092 34.432 1 55.3 ? N12 6Z5 401 A 1 HETATM 21 C C14 6Z5 . . . C 2 41.135 33.006 36.693 1 54.27 ? C14 6Z5 401 A 1 HETATM 22 C C16 6Z5 . . . C 2 40.398 31.798 37.226 1 52.55 ? C16 6Z5 401 A 1 HETATM 23 O O 6Z5 . . . C 2 39.548 33.72 34.988 1 54.52 ? O 6Z5 401 A 1 HETATM 24 C C17 6Z5 . . . C 2 41.672 33.479 33.028 1 60.03 ? C17 6Z5 401 A 1 HETATM 25 C C19 6Z5 . . . C 2 43.34 34.01 31.274 1 59.61 ? C19 6Z5 401 A 1 HETATM 26 C C23 6Z5 . . . C 2 42.623 30.389 30.357 1 61.29 ? C23 6Z5 401 A 1 HETATM 27 C C24 6Z5 . . . C 2 41.692 30.103 31.339 1 60.47 ? C24 6Z5 401 A 1 HETATM 28 C C25 6Z5 . . . C 2 41.332 31.079 32.245 1 60.15 ? C25 6Z5 401 A 1 HETATM 29 O O26 6Z5 . . . C 2 44.118 31.893 29.274 1 59.68 ? O26 6Z5 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 29 #