data_5KZ8 # _model_server_result.job_id RrSdyUdH4lrTtXjhIpl6aQ _model_server_result.datetime_utc '2024-11-15 04:01:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kz8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 5KZ8 # _exptl.entry_id 5KZ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.431 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,5-dimethyl-7-[(1~{S})-4-oxidanyl-1~{H}-inden-1-yl]-2-phenylazanyl-pyrrolo[2,3-d]pyrimidin-6-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5KZ8 _cell.length_a 120.416 _cell.length_b 120.416 _cell.length_c 99.457 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KZ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C23 H20 N4 O2' _chem_comp.formula_weight 384.431 _chem_comp.id 6Z5 _chem_comp.mon_nstd_flag . _chem_comp.name 5,5-dimethyl-7-[(1~{S})-4-oxidanyl-1~{H}-inden-1-yl]-2-phenylazanyl-pyrrolo[2,3-d]pyrimidin-6-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O26 C22 6Z5 sing 1 n n C22 C23 6Z5 doub 2 n y C22 C20 6Z5 sing 3 n y C23 C24 6Z5 sing 4 n y C20 C19 6Z5 sing 5 n n C20 C21 6Z5 doub 6 n y C19 C18 6Z5 doub 7 n n C9 C10 6Z5 doub 8 n y C9 C8 6Z5 sing 9 n y C24 C25 6Z5 doub 10 n y C10 C11 6Z5 sing 11 n y C21 C25 6Z5 sing 12 n y C21 C17 6Z5 sing 13 n n C8 C7 6Z5 doub 14 n y C18 C17 6Z5 sing 15 n n C11 C6 6Z5 doub 16 n y C17 N12 6Z5 sing 17 n n C7 C6 6Z5 sing 18 n y C6 N5 6Z5 sing 19 n n N12 C4 6Z5 sing 20 n n N12 C13 6Z5 sing 21 n n N3 C4 6Z5 doub 22 n y N3 C2 6Z5 sing 23 n y O C13 6Z5 doub 24 n n C4 C 6Z5 sing 25 n y N5 C2 6Z5 sing 26 n n C13 C14 6Z5 sing 27 n n C2 N 6Z5 doub 28 n y C C14 6Z5 sing 29 n n C C1 6Z5 doub 30 n y C14 C16 6Z5 sing 31 n n C14 C15 6Z5 sing 32 n n N C1 6Z5 sing 33 n y C7 H1 6Z5 sing 34 n n C9 H2 6Z5 sing 35 n n C10 H3 6Z5 sing 36 n n C11 H4 6Z5 sing 37 n n C15 H5 6Z5 sing 38 n n C15 H6 6Z5 sing 39 n n C15 H7 6Z5 sing 40 n n C18 H8 6Z5 sing 41 n n C1 H9 6Z5 sing 42 n n N5 H10 6Z5 sing 43 n n C8 H11 6Z5 sing 44 n n C16 H12 6Z5 sing 45 n n C16 H13 6Z5 sing 46 n n C16 H14 6Z5 sing 47 n n C17 H15 6Z5 sing 48 n n C19 H16 6Z5 sing 49 n n C23 H17 6Z5 sing 50 n n C24 H18 6Z5 sing 51 n n C25 H19 6Z5 sing 52 n n O26 H20 6Z5 sing 53 n n # _atom_sites.entry_id 5KZ8 _atom_sites.fract_transf_matrix[1][1] 0.008305 _atom_sites.fract_transf_matrix[1][2] 0.004795 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009589 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010055 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6Z5 A 1 401 1 6Z5 MRK . D 2 6Z5 B 1 401 1 6Z5 MRK . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 6Z5 . . . D 2 42.884 35.165 1.186 1 63.04 ? C2 6Z5 401 B 1 HETATM 2 C C7 6Z5 . . . D 2 43.661 38.175 3.17 1 63.32 ? C7 6Z5 401 B 1 HETATM 3 C C9 6Z5 . . . D 2 43.461 37.896 5.526 1 62.81 ? C9 6Z5 401 B 1 HETATM 4 C C10 6Z5 . . . D 2 42.933 36.639 5.336 1 60 ? C10 6Z5 401 B 1 HETATM 5 C C11 6Z5 . . . D 2 42.767 36.151 4.062 1 60.99 ? C11 6Z5 401 B 1 HETATM 6 C C13 6Z5 . . . D 2 43.007 30.631 1.163 1 62.05 ? C13 6Z5 401 B 1 HETATM 7 C C15 6Z5 . . . D 2 43.604 30.906 -1.236 1 63.08 ? C15 6Z5 401 B 1 HETATM 8 C C18 6Z5 . . . D 2 44.46 32.02 4.232 1 61.38 ? C18 6Z5 401 B 1 HETATM 9 C C20 6Z5 . . . D 2 42.512 32.784 5.287 1 62.73 ? C20 6Z5 401 B 1 HETATM 10 C C21 6Z5 . . . D 2 42.101 31.955 4.28 1 61.92 ? C21 6Z5 401 B 1 HETATM 11 C C22 6Z5 . . . D 2 41.571 33.368 6.105 1 65.58 ? C22 6Z5 401 B 1 HETATM 12 C C 6Z5 . . . D 2 42.661 32.708 0.172 1 62.41 ? C 6Z5 401 B 1 HETATM 13 C C1 6Z5 . . . D 2 42.444 33.817 -0.608 1 62.44 ? C1 6Z5 401 B 1 HETATM 14 N N 6Z5 . . . D 2 42.556 35.053 -0.109 1 62.97 ? N 6Z5 401 B 1 HETATM 15 N N3 6Z5 . . . D 2 43.108 34.139 2.02 1 62.6 ? N3 6Z5 401 B 1 HETATM 16 C C4 6Z5 . . . D 2 42.984 32.919 1.48 1 62.95 ? C4 6Z5 401 B 1 HETATM 17 N N5 6Z5 . . . D 2 42.988 36.48 1.642 1 63.43 ? N5 6Z5 401 B 1 HETATM 18 C C6 6Z5 . . . D 2 43.133 36.915 2.97 1 64.3 ? C6 6Z5 401 B 1 HETATM 19 C C8 6Z5 . . . D 2 43.827 38.668 4.445 1 62.95 ? C8 6Z5 401 B 1 HETATM 20 N N12 6Z5 . . . D 2 43.178 31.658 2.082 1 62.57 ? N12 6Z5 401 B 1 HETATM 21 C C14 6Z5 . . . D 2 42.608 31.264 -0.16 1 61.98 ? C14 6Z5 401 B 1 HETATM 22 C C16 6Z5 . . . D 2 41.204 30.866 -0.554 1 61.83 ? C16 6Z5 401 B 1 HETATM 23 O O 6Z5 . . . D 2 43.157 29.429 1.369 1 62.09 ? O 6Z5 401 B 1 HETATM 24 C C17 6Z5 . . . D 2 43.25 31.421 3.519 1 62.34 ? C17 6Z5 401 B 1 HETATM 25 C C19 6Z5 . . . D 2 43.984 32.929 5.355 1 60.89 ? C19 6Z5 401 B 1 HETATM 26 C C23 6Z5 . . . D 2 40.225 33.106 5.894 1 64.17 ? C23 6Z5 401 B 1 HETATM 27 C C24 6Z5 . . . D 2 39.817 32.266 4.872 1 62.01 ? C24 6Z5 401 B 1 HETATM 28 C C25 6Z5 . . . D 2 40.765 31.682 4.053 1 61.43 ? C25 6Z5 401 B 1 HETATM 29 O O26 6Z5 . . . D 2 41.967 34.203 7.131 1 67.74 ? O26 6Z5 401 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #