data_5KZI # _model_server_result.job_id xq2_9T7C4pcksIzwfeJy1w _model_server_result.datetime_utc '2024-11-05 04:04:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kzi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5KZI # _exptl.entry_id 5KZI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 421.446 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[4-[(3~{S})-3-azanylpiperidin-1-yl]pyridin-3-yl]-2-[2,6-bis(fluoranyl)phenyl]imidazo[1,5-b]pyridazin-7-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5KZI _cell.length_a 95.998 _cell.length_b 95.998 _cell.length_c 81.251 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KZI _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H21 F2 N7' _chem_comp.formula_weight 421.446 _chem_comp.id 6YN _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[4-[(3~{S})-3-azanylpiperidin-1-yl]pyridin-3-yl]-2-[2,6-bis(fluoranyl)phenyl]imidazo[1,5-b]pyridazin-7-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 N3 6YN sing 1 n y C9 C5 6YN doub 2 n y N3 C8 6YN doub 3 n y C5 C6 6YN sing 4 n y C5 N2 6YN sing 5 n y C6 C7 6YN doub 6 n y C17 N5 6YN doub 7 n y C17 C13 6YN sing 8 n y N5 C16 6YN sing 9 n y C8 N2 6YN sing 10 n y C8 N4 6YN sing 11 n n N2 N1 6YN sing 12 n y C7 C4 6YN sing 13 n y N4 C13 6YN sing 14 n n C13 C14 6YN doub 15 n y C16 C15 6YN doub 16 n y N1 C4 6YN doub 17 n y C4 C3 6YN sing 18 n n F2 C10 6YN sing 19 n n C14 C15 6YN sing 20 n y C14 N6 6YN sing 21 n n C3 C10 6YN doub 22 n y C3 C12 6YN sing 23 n y C10 C1 6YN sing 24 n y N6 C18 6YN sing 25 n n N6 C22 6YN sing 26 n n F1 C12 6YN sing 27 n n C12 C11 6YN doub 28 n y C18 C19 6YN sing 29 n n C22 C21 6YN sing 30 n n C1 C2 6YN doub 31 n y C19 C20 6YN sing 32 n n C11 C2 6YN sing 33 n y C21 C20 6YN sing 34 n n C21 N7 6YN sing 35 n n C11 H1 6YN sing 36 n n C2 H2 6YN sing 37 n n C1 H3 6YN sing 38 n n C7 H4 6YN sing 39 n n C6 H5 6YN sing 40 n n C9 H6 6YN sing 41 n n N4 H7 6YN sing 42 n n C17 H8 6YN sing 43 n n C16 H9 6YN sing 44 n n C15 H10 6YN sing 45 n n C22 H11 6YN sing 46 n n C22 H12 6YN sing 47 n n C18 H13 6YN sing 48 n n C18 H14 6YN sing 49 n n C19 H15 6YN sing 50 n n C19 H16 6YN sing 51 n n C20 H17 6YN sing 52 n n C20 H18 6YN sing 53 n n C21 H19 6YN sing 54 n n N7 H20 6YN sing 55 n n N7 H21 6YN sing 56 n n # _atom_sites.entry_id 5KZI _atom_sites.fract_transf_matrix[1][1] 0.010417 _atom_sites.fract_transf_matrix[1][2] 0.006014 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012028 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012308 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6YN A 1 401 1 6YN UNL . C 3 HOH A 1 501 143 HOH HOH . C 3 HOH A 2 502 12 HOH HOH . C 3 HOH A 3 503 158 HOH HOH . C 3 HOH A 4 504 95 HOH HOH . C 3 HOH A 5 505 117 HOH HOH . C 3 HOH A 6 506 120 HOH HOH . C 3 HOH A 7 507 101 HOH HOH . C 3 HOH A 8 508 58 HOH HOH . C 3 HOH A 9 509 148 HOH HOH . C 3 HOH A 10 510 25 HOH HOH . C 3 HOH A 11 511 108 HOH HOH . C 3 HOH A 12 512 64 HOH HOH . C 3 HOH A 13 513 105 HOH HOH . C 3 HOH A 14 514 62 HOH HOH . C 3 HOH A 15 515 22 HOH HOH . C 3 HOH A 16 516 79 HOH HOH . C 3 HOH A 17 517 80 HOH HOH . C 3 HOH A 18 518 36 HOH HOH . C 3 HOH A 19 519 89 HOH HOH . C 3 HOH A 20 520 65 HOH HOH . C 3 HOH A 21 521 18 HOH HOH . C 3 HOH A 22 522 47 HOH HOH . C 3 HOH A 23 523 118 HOH HOH . C 3 HOH A 24 524 48 HOH HOH . C 3 HOH A 25 525 26 HOH HOH . C 3 HOH A 26 526 76 HOH HOH . C 3 HOH A 27 527 37 HOH HOH . C 3 HOH A 28 528 33 HOH HOH . C 3 HOH A 29 529 100 HOH HOH . C 3 HOH A 30 530 125 HOH HOH . C 3 HOH A 31 531 163 HOH HOH . C 3 HOH A 32 532 157 HOH HOH . C 3 HOH A 33 533 159 HOH HOH . C 3 HOH A 34 534 46 HOH HOH . C 3 HOH A 35 535 29 HOH HOH . C 3 HOH A 36 536 145 HOH HOH . C 3 HOH A 37 537 28 HOH HOH . C 3 HOH A 38 538 35 HOH HOH . C 3 HOH A 39 539 115 HOH HOH . C 3 HOH A 40 540 85 HOH HOH . C 3 HOH A 41 541 3 HOH HOH . C 3 HOH A 42 542 141 HOH HOH . C 3 HOH A 43 543 1 HOH HOH . C 3 HOH A 44 544 30 HOH HOH . C 3 HOH A 45 545 107 HOH HOH . C 3 HOH A 46 546 99 HOH HOH . C 3 HOH A 47 547 155 HOH HOH . C 3 HOH A 48 548 14 HOH HOH . C 3 HOH A 49 549 156 HOH HOH . C 3 HOH A 50 550 20 HOH HOH . C 3 HOH A 51 551 15 HOH HOH . C 3 HOH A 52 552 51 HOH HOH . C 3 HOH A 53 553 52 HOH HOH . C 3 HOH A 54 554 88 HOH HOH . C 3 HOH A 55 555 83 HOH HOH . C 3 HOH A 56 556 54 HOH HOH . C 3 HOH A 57 557 53 HOH HOH . C 3 HOH A 58 558 168 HOH HOH . C 3 HOH A 59 559 41 HOH HOH . C 3 HOH A 60 560 69 HOH HOH . C 3 HOH A 61 561 38 HOH HOH . C 3 HOH A 62 562 142 HOH HOH . C 3 HOH A 63 563 44 HOH HOH . C 3 HOH A 64 564 91 HOH HOH . C 3 HOH A 65 565 106 HOH HOH . C 3 HOH A 66 566 92 HOH HOH . C 3 HOH A 67 567 31 HOH HOH . C 3 HOH A 68 568 127 HOH HOH . C 3 HOH A 69 569 147 HOH HOH . C 3 HOH A 70 570 39 HOH HOH . C 3 HOH A 71 571 75 HOH HOH . C 3 HOH A 72 572 110 HOH HOH . C 3 HOH A 73 573 40 HOH HOH . C 3 HOH A 74 574 71 HOH HOH . C 3 HOH A 75 575 94 HOH HOH . C 3 HOH A 76 576 23 HOH HOH . C 3 HOH A 77 577 19 HOH HOH . C 3 HOH A 78 578 59 HOH HOH . C 3 HOH A 79 579 8 HOH HOH . C 3 HOH A 80 580 136 HOH HOH . C 3 HOH A 81 581 122 HOH HOH . C 3 HOH A 82 582 102 HOH HOH . C 3 HOH A 83 583 151 HOH HOH . C 3 HOH A 84 584 45 HOH HOH . C 3 HOH A 85 585 67 HOH HOH . C 3 HOH A 86 586 68 HOH HOH . C 3 HOH A 87 587 104 HOH HOH . C 3 HOH A 88 588 4 HOH HOH . C 3 HOH A 89 589 73 HOH HOH . C 3 HOH A 90 590 16 HOH HOH . C 3 HOH A 91 591 82 HOH HOH . C 3 HOH A 92 592 93 HOH HOH . C 3 HOH A 93 593 10 HOH HOH . C 3 HOH A 94 594 119 HOH HOH . C 3 HOH A 95 595 98 HOH HOH . C 3 HOH A 96 596 109 HOH HOH . C 3 HOH A 97 597 57 HOH HOH . C 3 HOH A 98 598 160 HOH HOH . C 3 HOH A 99 599 24 HOH HOH . C 3 HOH A 100 600 129 HOH HOH . C 3 HOH A 101 601 32 HOH HOH . C 3 HOH A 102 602 70 HOH HOH . C 3 HOH A 103 603 84 HOH HOH . C 3 HOH A 104 604 6 HOH HOH . C 3 HOH A 105 605 17 HOH HOH . C 3 HOH A 106 606 126 HOH HOH . C 3 HOH A 107 607 86 HOH HOH . C 3 HOH A 108 608 154 HOH HOH . C 3 HOH A 109 609 11 HOH HOH . C 3 HOH A 110 610 169 HOH HOH . C 3 HOH A 111 611 161 HOH HOH . C 3 HOH A 112 612 60 HOH HOH . C 3 HOH A 113 613 97 HOH HOH . C 3 HOH A 114 614 103 HOH HOH . C 3 HOH A 115 615 63 HOH HOH . C 3 HOH A 116 616 121 HOH HOH . C 3 HOH A 117 617 162 HOH HOH . C 3 HOH A 118 618 49 HOH HOH . C 3 HOH A 119 619 2 HOH HOH . C 3 HOH A 120 620 34 HOH HOH . C 3 HOH A 121 621 78 HOH HOH . C 3 HOH A 122 622 130 HOH HOH . C 3 HOH A 123 623 55 HOH HOH . C 3 HOH A 124 624 7 HOH HOH . C 3 HOH A 125 625 149 HOH HOH . C 3 HOH A 126 626 87 HOH HOH . C 3 HOH A 127 627 116 HOH HOH . C 3 HOH A 128 628 137 HOH HOH . C 3 HOH A 129 629 42 HOH HOH . C 3 HOH A 130 630 140 HOH HOH . C 3 HOH A 131 631 77 HOH HOH . C 3 HOH A 132 632 114 HOH HOH . C 3 HOH A 133 633 27 HOH HOH . C 3 HOH A 134 634 9 HOH HOH . C 3 HOH A 135 635 66 HOH HOH . C 3 HOH A 136 636 132 HOH HOH . C 3 HOH A 137 637 21 HOH HOH . C 3 HOH A 138 638 5 HOH HOH . C 3 HOH A 139 639 134 HOH HOH . C 3 HOH A 140 640 166 HOH HOH . C 3 HOH A 141 641 43 HOH HOH . C 3 HOH A 142 642 90 HOH HOH . C 3 HOH A 143 643 135 HOH HOH . C 3 HOH A 144 644 128 HOH HOH . C 3 HOH A 145 645 113 HOH HOH . C 3 HOH A 146 646 146 HOH HOH . C 3 HOH A 147 647 72 HOH HOH . C 3 HOH A 148 648 144 HOH HOH . C 3 HOH A 149 649 56 HOH HOH . C 3 HOH A 150 650 139 HOH HOH . C 3 HOH A 151 651 61 HOH HOH . C 3 HOH A 152 652 96 HOH HOH . C 3 HOH A 153 653 131 HOH HOH . C 3 HOH A 154 654 112 HOH HOH . C 3 HOH A 155 655 152 HOH HOH . C 3 HOH A 156 656 170 HOH HOH . C 3 HOH A 157 657 153 HOH HOH . C 3 HOH A 158 658 133 HOH HOH . C 3 HOH A 159 659 167 HOH HOH . C 3 HOH A 160 660 13 HOH HOH . C 3 HOH A 161 661 111 HOH HOH . C 3 HOH A 162 662 74 HOH HOH . C 3 HOH A 163 663 150 HOH HOH . C 3 HOH A 164 664 50 HOH HOH . C 3 HOH A 165 665 165 HOH HOH . C 3 HOH A 166 666 124 HOH HOH . C 3 HOH A 167 667 164 HOH HOH . C 3 HOH A 168 668 138 HOH HOH . C 3 HOH A 169 669 81 HOH HOH . C 3 HOH A 170 670 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F1 6YN . . . B 2 -43.066 -2.91 3.019 1 30.57 ? F1 6YN 401 A 1 HETATM 2 C C12 6YN . . . B 2 -44.074 -2.054 3.262 1 30.42 ? C12 6YN 401 A 1 HETATM 3 C C11 6YN . . . B 2 -44.618 -2.013 4.544 1 30.67 ? C11 6YN 401 A 1 HETATM 4 C C2 6YN . . . B 2 -45.669 -1.142 4.829 1 31.75 ? C2 6YN 401 A 1 HETATM 5 C C1 6YN . . . B 2 -46.162 -0.321 3.817 1 31 ? C1 6YN 401 A 1 HETATM 6 C C10 6YN . . . B 2 -45.605 -0.364 2.54 1 30.52 ? C10 6YN 401 A 1 HETATM 7 F F2 6YN . . . B 2 -46.097 0.439 1.587 1 31.65 ? F2 6YN 401 A 1 HETATM 8 C C3 6YN . . . B 2 -44.553 -1.227 2.238 1 29.34 ? C3 6YN 401 A 1 HETATM 9 C C4 6YN . . . B 2 -43.991 -1.298 0.942 1 28.57 ? C4 6YN 401 A 1 HETATM 10 C C7 6YN . . . B 2 -44.754 -1.229 -0.231 1 28.56 ? C7 6YN 401 A 1 HETATM 11 C C6 6YN . . . B 2 -44.141 -1.314 -1.484 1 28.59 ? C6 6YN 401 A 1 HETATM 12 N N1 6YN . . . B 2 -42.674 -1.451 0.804 1 28.53 ? N1 6YN 401 A 1 HETATM 13 N N2 6YN . . . B 2 -42.114 -1.536 -0.301 1 27.61 ? N2 6YN 401 A 1 HETATM 14 C C5 6YN . . . B 2 -42.763 -1.482 -1.512 1 27.62 ? C5 6YN 401 A 1 HETATM 15 C C9 6YN . . . B 2 -41.835 -1.615 -2.477 1 27.73 ? C9 6YN 401 A 1 HETATM 16 N N3 6YN . . . B 2 -40.619 -1.75 -1.92 1 26.69 ? N3 6YN 401 A 1 HETATM 17 C C8 6YN . . . B 2 -40.792 -1.715 -0.599 1 26.86 ? C8 6YN 401 A 1 HETATM 18 N N4 6YN . . . B 2 -39.943 -1.786 0.427 1 26.39 ? N4 6YN 401 A 1 HETATM 19 C C13 6YN . . . B 2 -38.668 -2.158 0.438 1 26 ? C13 6YN 401 A 1 HETATM 20 C C17 6YN . . . B 2 -37.894 -2.193 -0.715 1 27.08 ? C17 6YN 401 A 1 HETATM 21 N N5 6YN . . . B 2 -36.622 -2.562 -0.659 1 26.21 ? N5 6YN 401 A 1 HETATM 22 C C16 6YN . . . B 2 -36.041 -2.901 0.484 1 27.17 ? C16 6YN 401 A 1 HETATM 23 C C15 6YN . . . B 2 -36.744 -2.885 1.683 1 26.18 ? C15 6YN 401 A 1 HETATM 24 C C14 6YN . . . B 2 -38.083 -2.514 1.655 1 26.41 ? C14 6YN 401 A 1 HETATM 25 N N6 6YN . . . B 2 -38.786 -2.459 2.876 1 27.21 ? N6 6YN 401 A 1 HETATM 26 C C22 6YN . . . B 2 -38.835 -3.631 3.777 1 27.23 ? C22 6YN 401 A 1 HETATM 27 C C18 6YN . . . B 2 -39.265 -1.118 3.334 1 27.66 ? C18 6YN 401 A 1 HETATM 28 C C19 6YN . . . B 2 -40.469 -1.205 4.272 1 27.05 ? C19 6YN 401 A 1 HETATM 29 C C20 6YN . . . B 2 -40.248 -2.27 5.341 1 27.31 ? C20 6YN 401 A 1 HETATM 30 C C21 6YN . . . B 2 -40.086 -3.649 4.656 1 26.52 ? C21 6YN 401 A 1 HETATM 31 N N7 6YN . . . B 2 -39.973 -4.711 5.667 1 25.78 ? N7 6YN 401 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #