data_5KZM # _model_server_result.job_id qeR1isNnXgw7ajMeco5y4Q _model_server_result.datetime_utc '2024-12-21 18:33:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kzm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 5KZM # _exptl.entry_id 5KZM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KZM _cell.length_a 111.176 _cell.length_b 171.986 _cell.length_c 76.109 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KZM _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1,2 A,B,C,D,E,F,G 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 76.109 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 4 A MSE 1 1_555 A N THR 5 A THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C MSE 195 A MSE 192 1_555 A N PRO 196 A PRO 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 A C LYS 254 A LYS 251 1_555 A N MSE 255 A MSE 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C MSE 255 A MSE 252 1_555 A N LEU 256 A LEU 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 A C GLU 265 A GLU 262 1_555 A N MSE 266 A MSE 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C MSE 266 A MSE 263 1_555 A N LYS 267 A LYS 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale7 B C MSE 1 B MSE 1 1_555 B N SER 2 B SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 B C HIS 85 B HIS 85 1_555 B N LLP 86 B LLP 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale9 B C LLP 86 B LLP 86 1_555 B N THR 87 B THR 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 B C ARG 99 B ARG 99 1_555 B N MSE 100 B MSE 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 B C MSE 100 B MSE 100 1_555 B N GLY 101 B GLY 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale12 B C TYR 132 B TYR 132 1_555 B N MSE 133 B MSE 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale13 B C MSE 133 B MSE 133 1_555 B N GLY 134 B GLY 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale14 B C ARG 147 B ARG 147 1_555 B N MSE 148 B MSE 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 B C MSE 148 B MSE 148 1_555 B N LYS 149 B LYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale16 B C LEU 150 B LEU 150 1_555 B N MSE 151 B MSE 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale17 B C MSE 151 B MSE 151 1_555 B N GLY 152 B GLY 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale18 B C ARG 205 B ARG 205 1_555 B N MSE 206 B MSE 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale19 B C MSE 206 B MSE 206 1_555 B N ILE 207 B ILE 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale20 B C GLN 214 B GLN 214 1_555 B N MSE 215 B MSE 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale21 B C MSE 215 B MSE 215 1_555 B N LEU 216 B LEU 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale22 B C GLY 238 B GLY 238 1_555 B N MSE 239 B MSE 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale23 B C MSE 239 B MSE 239 1_555 B N PHE 240 B PHE 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale24 B C GLY 280 B GLY 280 1_555 B N MSE 281 B MSE 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale25 B C MSE 281 B MSE 281 1_555 B N LYS 282 B LYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale26 B C LEU 285 B LEU 285 1_555 B N MSE 286 B MSE 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale27 B C MSE 286 B MSE 286 1_555 B N GLN 287 B GLN 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 B OE1 GLU 295 B GLU 295 1_555 D CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc2 B O SER 296 B SER 296 1_555 D CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc3 B OD1 ASP 304 B ASP 304 1_555 D CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc4 B OD2 ASP 304 B ASP 304 1_555 D CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc5 B O GLU 363 B GLU 363 1_555 E CA CA . B CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? metalc ? metalc6 A OE1 GLU 206 A GLU 203 1_555 E CA CA . B CA 403 1_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? metalc ? metalc7 E CA CA . B CA 403 1_555 F O HOH . A HOH 302 1_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5KZM _atom_sites.fract_transf_matrix[1][1] 0.008995 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005814 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013139 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ACT B 1 401 1 ACT ACT . D 4 CA B 1 402 1 CA CA . E 4 CA B 1 403 2 CA CA . F 5 HOH A 1 301 4 HOH HOH . F 5 HOH A 2 302 9 HOH HOH . G 5 HOH B 1 501 1 HOH HOH . G 5 HOH B 2 502 3 HOH HOH . G 5 HOH B 3 503 10 HOH HOH . G 5 HOH B 4 504 7 HOH HOH . G 5 HOH B 5 505 8 HOH HOH . G 5 HOH B 6 506 2 HOH HOH . G 5 HOH B 7 507 5 HOH HOH . G 5 HOH B 8 508 6 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 21.665 _atom_site.Cartn_y 31.323 _atom_site.Cartn_z 57.811 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 139.15 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 403 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #