data_5KZQ # _model_server_result.job_id 2D0gOOV8gmql95m-0A88wg _model_server_result.datetime_utc '2025-07-19 17:28:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kzq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5KZQ # _exptl.entry_id 5KZQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 359.345 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1~{S},2~{R},3~{S},4~{S},5~{R},6~{R})-2-azanyl-3-[[3,4-bis(fluoranyl)phenyl]sulfanylmethyl]-4-oxidanyl-bicyclo[3.1.0]hexane-2,6-dicarboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KZQ _cell.length_a 166.297 _cell.length_b 166.297 _cell.length_c 79.776 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KZQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 50 A CYS 50 1_555 A SG CYS 92 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf2 A SG CYS 355 A CYS 355 1_555 A SG CYS 362 A CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 A SG CYS 400 A CYS 400 1_555 A SG CYS 407 A CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf4 A SG CYS 500 A CYS 500 1_555 A SG CYS 519 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf5 A SG CYS 504 A CYS 504 1_555 A SG CYS 522 A CYS 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 A SG CYS 525 A CYS 525 1_555 A SG CYS 537 A CYS 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 A ND2 ASN 203 A ASN 203 1_555 C C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? # _chem_comp.formula 'C15 H15 F2 N O5 S' _chem_comp.formula_weight 359.345 _chem_comp.id 6YS _chem_comp.mon_nstd_flag . _chem_comp.name '(1~{S},2~{R},3~{S},4~{S},5~{R},6~{R})-2-azanyl-3-[[3,4-bis(fluoranyl)phenyl]sulfanylmethyl]-4-oxidanyl-bicyclo[3.1.0]hexane-2,6-dicarboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O19 C7 6YS doub 1 n n C7 O17 6YS sing 2 n n C7 C9 6YS sing 3 n n F22 C4 6YS sing 4 n n C1 C4 6YS doub 5 n y C1 C2 6YS sing 6 n y C9 C11 6YS sing 7 n n C9 C10 6YS sing 8 n n C4 C5 6YS sing 9 n y C2 C6 6YS doub 10 n y N16 C14 6YS sing 11 n n C11 C10 6YS sing 12 n n C11 C14 6YS sing 13 n n O21 C13 6YS sing 14 n n C10 C13 6YS sing 15 n n C14 C12 6YS sing 16 n n C14 C8 6YS sing 17 n n C5 F23 6YS sing 18 n n C5 C3 6YS doub 19 n y C6 C3 6YS sing 20 n y C6 S24 6YS sing 21 n n C12 C13 6YS sing 22 n n C12 C15 6YS sing 23 n n S24 C15 6YS sing 24 n n C8 O18 6YS doub 25 n n C8 O20 6YS sing 26 n n C1 H1 6YS sing 27 n n C3 H2 6YS sing 28 n n C2 H3 6YS sing 29 n n C9 H4 6YS sing 30 n n C10 H5 6YS sing 31 n n C11 H6 6YS sing 32 n n C12 H7 6YS sing 33 n n C13 H8 6YS sing 34 n n C15 H9 6YS sing 35 n n C15 H10 6YS sing 36 n n N16 H11 6YS sing 37 n n N16 H12 6YS sing 38 n n O17 H14 6YS sing 39 n n O20 H15 6YS sing 40 n n O21 H16 6YS sing 41 n n # _atom_sites.entry_id 5KZQ _atom_sites.fract_transf_matrix[1][1] 0.006013 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006013 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012535 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6YS A 1 601 1 6YS SX1 . C 3 NAG A 1 602 1 NAG NAG . D 4 HOH A 1 701 1 HOH HOH . D 4 HOH A 2 702 2 HOH HOH . D 4 HOH A 3 703 5 HOH HOH . D 4 HOH A 4 704 7 HOH HOH . D 4 HOH A 5 705 4 HOH HOH . D 4 HOH A 6 706 3 HOH HOH . D 4 HOH A 7 707 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 6YS . . . B 2 -20.985 -28.295 23.012 1 88.57 ? C7 6YS 601 A 1 HETATM 2 C C6 6YS . . . B 2 -26.905 -31.427 25.942 1 93.58 ? C6 6YS 601 A 1 HETATM 3 C C1 6YS . . . B 2 -27.59 -32.58 23.938 1 98.64 ? C1 6YS 601 A 1 HETATM 4 C C5 6YS . . . B 2 -26.709 -33.845 25.827 1 102.51 ? C5 6YS 601 A 1 HETATM 5 C C4 6YS . . . B 2 -27.218 -33.794 24.528 1 102.68 ? C4 6YS 601 A 1 HETATM 6 C C3 6YS . . . B 2 -26.548 -32.643 26.527 1 98.93 ? C3 6YS 601 A 1 HETATM 7 C C2 6YS . . . B 2 -27.441 -31.387 24.651 1 96.13 ? C2 6YS 601 A 1 HETATM 8 C C8 6YS . . . B 2 -23.961 -27.225 26.954 1 80.59 ? C8 6YS 601 A 1 HETATM 9 C C9 6YS . . . B 2 -22.02 -28.703 23.946 1 85.57 ? C9 6YS 601 A 1 HETATM 10 C C10 6YS . . . B 2 -21.72 -29.127 25.356 1 85.12 ? C10 6YS 601 A 1 HETATM 11 C C11 6YS . . . B 2 -22.487 -27.873 25.108 1 83.25 ? C11 6YS 601 A 1 HETATM 12 C C12 6YS . . . B 2 -24.017 -29.573 25.979 1 83.18 ? C12 6YS 601 A 1 HETATM 13 C C13 6YS . . . B 2 -22.582 -30.156 26.014 1 85.34 ? C13 6YS 601 A 1 HETATM 14 C C14 6YS . . . B 2 -23.845 -28.048 25.716 1 81.33 ? C14 6YS 601 A 1 HETATM 15 C C15 6YS . . . B 2 -24.884 -30.015 27.159 1 85.82 ? C15 6YS 601 A 1 HETATM 16 N N16 6YS . . . B 2 -24.829 -27.529 24.792 1 82.88 ? N16 6YS 601 A 1 HETATM 17 O O17 6YS . . . B 2 -20.184 -27.39 23.182 1 92.07 ? O17 6YS 601 A 1 HETATM 18 O O18 6YS . . . B 2 -24.889 -26.485 27.227 1 80.85 ? O18 6YS 601 A 1 HETATM 19 O O19 6YS . . . B 2 -21.038 -29.1 21.94 1 87.8 ? O19 6YS 601 A 1 HETATM 20 O O20 6YS . . . B 2 -22.878 -27.418 27.726 1 81.37 ? O20 6YS 601 A 1 HETATM 21 O O21 6YS . . . B 2 -22.461 -31.348 25.242 1 87.72 ? O21 6YS 601 A 1 HETATM 22 F F22 6YS . . . B 2 -27.309 -34.926 23.834 1 108.56 ? F22 6YS 601 A 1 HETATM 23 F F23 6YS . . . B 2 -26.368 -35.028 26.388 1 105.17 ? F23 6YS 601 A 1 HETATM 24 S S24 6YS . . . B 2 -26.671 -29.946 26.854 1 88.3 ? S24 6YS 601 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #