data_5KZQ
#
_model_server_result.job_id            oWZUehAKDf7d5u-G362PzQ 
_model_server_result.datetime_utc      '2025-07-17 09:51:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kzq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    5KZQ 
#
_exptl.entry_id    5KZQ 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5KZQ 
_cell.length_a            166.297 
_cell.length_b            166.297 
_cell.length_c            79.776 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KZQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 50 A CYS 50 1_555 A SG CYS 92 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf2 A SG CYS 355 A CYS 355 1_555 A SG CYS 362 A CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf3 A SG CYS 400 A CYS 400 1_555 A SG CYS 407 A CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf4 A SG CYS 500 A CYS 500 1_555 A SG CYS 519 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf5 A SG CYS 504 A CYS 504 1_555 A SG CYS 522 A CYS 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf6 A SG CYS 525 A CYS 525 1_555 A SG CYS 537 A CYS 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
covale ? covale1 A ND2 ASN 203 A ASN 203 1_555 C C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 278 n n 
C1 O1 NAG sing 279 n n 
C1 O5 NAG sing 280 n n 
C1 H1 NAG sing 281 n n 
C2 C3 NAG sing 282 n n 
C2 N2 NAG sing 283 n n 
C2 H2 NAG sing 284 n n 
C3 C4 NAG sing 285 n n 
C3 O3 NAG sing 286 n n 
C3 H3 NAG sing 287 n n 
C4 C5 NAG sing 288 n n 
C4 O4 NAG sing 289 n n 
C4 H4 NAG sing 290 n n 
C5 C6 NAG sing 291 n n 
C5 O5 NAG sing 292 n n 
C5 H5 NAG sing 293 n n 
C6 O6 NAG sing 294 n n 
C6 H61 NAG sing 295 n n 
C6 H62 NAG sing 296 n n 
C7 C8 NAG sing 297 n n 
C7 N2 NAG sing 298 n n 
C7 O7 NAG doub 299 n n 
C8 H81 NAG sing 300 n n 
C8 H82 NAG sing 301 n n 
C8 H83 NAG sing 302 n n 
N2 HN2 NAG sing 303 n n 
O1 HO1 NAG sing 304 n n 
O3 HO3 NAG sing 305 n n 
O4 HO4 NAG sing 306 n n 
O6 HO6 NAG sing 307 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5KZQ 
_atom_sites.fract_transf_matrix[1][1]    0.006013 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006013 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012535 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 6YS A 1 601 1 6YS SX1 . 
C 3 NAG A 1 602 1 NAG NAG . 
D 4 HOH A 1 701 1 HOH HOH . 
D 4 HOH A 2 702 2 HOH HOH . 
D 4 HOH A 3 703 5 HOH HOH . 
D 4 HOH A 4 704 7 HOH HOH . 
D 4 HOH A 5 705 4 HOH HOH . 
D 4 HOH A 6 706 3 HOH HOH . 
D 4 HOH A 7 707 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 3 -56.617 -33.653 16.094 1 155.18 ? C1 NAG 602 A 1 
HETATM 2 C C2 NAG . . . C 3 -56.758 -34.115 14.641 1 156.33 ? C2 NAG 602 A 1 
HETATM 3 C C3 NAG . . . C 3 -57.532 -33.077 13.822 1 159.85 ? C3 NAG 602 A 1 
HETATM 4 C C4 NAG . . . C 3 -58.854 -32.709 14.499 1 160.45 ? C4 NAG 602 A 1 
HETATM 5 C C5 NAG . . . C 3 -58.584 -32.233 15.927 1 159.87 ? C5 NAG 602 A 1 
HETATM 6 C C6 NAG . . . C 3 -59.833 -31.883 16.716 1 160.11 ? C6 NAG 602 A 1 
HETATM 7 C C7 NAG . . . C 3 -54.941 -35.588 13.825 1 151.03 ? C7 NAG 602 A 1 
HETATM 8 C C8 NAG . . . C 3 -53.778 -35.652 12.88 1 150.07 ? C8 NAG 602 A 1 
HETATM 9 N N2 NAG . . . C 3 -55.456 -34.365 14.039 1 153.41 ? N2 NAG 602 A 1 
HETATM 10 O O3 NAG . . . C 3 -57.764 -33.57 12.504 1 160.62 ? O3 NAG 602 A 1 
HETATM 11 O O4 NAG . . . C 3 -59.537 -31.698 13.759 1 160.06 ? O4 NAG 602 A 1 
HETATM 12 O O5 NAG . . . C 3 -57.882 -33.259 16.658 1 157.9 ? O5 NAG 602 A 1 
HETATM 13 O O6 NAG . . . C 3 -60.644 -33.018 16.991 1 160.25 ? O6 NAG 602 A 1 
HETATM 14 O O7 NAG . . . C 3 -55.394 -36.594 14.365 1 150 ? O7 NAG 602 A 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           237 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           14 
#