data_5KZU # _model_server_result.job_id EC2svNAWnT7B7SeVR6lPfg _model_server_result.datetime_utc '2025-01-10 13:02:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kzu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 5KZU # _exptl.entry_id 5KZU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KZU _cell.length_a 98.33 _cell.length_b 98.33 _cell.length_c 268.43 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KZU _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 136 A CYS 127 1_555 A SG CYS 149 A CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf2 A SG CYS 199 A CYS 190 1_555 A SG CYS 200 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf3 B SG CYS 136 B CYS 127 1_555 B SG CYS 149 B CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 B SG CYS 199 B CYS 190 1_555 B SG CYS 200 B CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf5 C SG CYS 136 C CYS 127 1_555 C SG CYS 149 C CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf6 C SG CYS 199 C CYS 190 1_555 C SG CYS 200 C CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf7 D SG CYS 136 D CYS 127 1_555 D SG CYS 149 D CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf8 D SG CYS 199 D CYS 190 1_555 D SG CYS 200 D CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf9 E SG CYS 136 E CYS 127 1_555 E SG CYS 149 E CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? disulf ? disulf10 E SG CYS 199 E CYS 190 1_555 E SG CYS 200 E CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 313 n n O1 HO1 PG4 sing 314 n n C1 C2 PG4 sing 315 n n C1 H11 PG4 sing 316 n n C1 H12 PG4 sing 317 n n C2 O2 PG4 sing 318 n n C2 H21 PG4 sing 319 n n C2 H22 PG4 sing 320 n n O2 C3 PG4 sing 321 n n C3 C4 PG4 sing 322 n n C3 H31 PG4 sing 323 n n C3 H32 PG4 sing 324 n n C4 O3 PG4 sing 325 n n C4 H41 PG4 sing 326 n n C4 H42 PG4 sing 327 n n O3 C5 PG4 sing 328 n n C5 C6 PG4 sing 329 n n C5 H51 PG4 sing 330 n n C5 H52 PG4 sing 331 n n C6 O4 PG4 sing 332 n n C6 H61 PG4 sing 333 n n C6 H62 PG4 sing 334 n n O4 C7 PG4 sing 335 n n C7 C8 PG4 sing 336 n n C7 H71 PG4 sing 337 n n C7 H72 PG4 sing 338 n n C8 O5 PG4 sing 339 n n C8 H81 PG4 sing 340 n n C8 H82 PG4 sing 341 n n O5 HO5 PG4 sing 342 n n # _atom_sites.entry_id 5KZU _atom_sites.fract_transf_matrix[1][1] 0.01017 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01017 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003725 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 SO4 A 1 301 5 SO4 SO4 . G 3 PG4 A 1 302 2 PG4 PG4 . H 2 SO4 B 1 301 4 SO4 SO4 . I 3 PG4 C 1 301 1 PG4 PG4 . J 2 SO4 D 1 301 3 SO4 SO4 . K 4 74S D 1 302 1 74S LIG . L 2 SO4 E 1 301 1 SO4 SO4 . M 2 SO4 E 1 302 2 SO4 SO4 . N 5 HOH A 1 401 94 HOH HOH . N 5 HOH A 2 402 12 HOH HOH . N 5 HOH A 3 403 121 HOH HOH . N 5 HOH A 4 404 74 HOH HOH . N 5 HOH A 5 405 58 HOH HOH . N 5 HOH A 6 406 18 HOH HOH . N 5 HOH A 7 407 108 HOH HOH . N 5 HOH A 8 408 15 HOH HOH . N 5 HOH A 9 409 119 HOH HOH . N 5 HOH A 10 410 109 HOH HOH . N 5 HOH A 11 411 122 HOH HOH . N 5 HOH A 12 412 125 HOH HOH . N 5 HOH A 13 413 98 HOH HOH . N 5 HOH A 14 414 16 HOH HOH . N 5 HOH A 15 415 111 HOH HOH . N 5 HOH A 16 416 20 HOH HOH . N 5 HOH A 17 417 13 HOH HOH . N 5 HOH A 18 418 65 HOH HOH . N 5 HOH A 19 419 129 HOH HOH . N 5 HOH A 20 420 57 HOH HOH . N 5 HOH A 21 421 128 HOH HOH . N 5 HOH A 22 422 115 HOH HOH . N 5 HOH A 23 423 87 HOH HOH . N 5 HOH A 24 424 120 HOH HOH . N 5 HOH A 25 425 82 HOH HOH . N 5 HOH A 26 426 127 HOH HOH . N 5 HOH A 27 427 126 HOH HOH . N 5 HOH A 28 428 140 HOH HOH . N 5 HOH A 29 429 17 HOH HOH . N 5 HOH A 30 430 118 HOH HOH . N 5 HOH A 31 431 117 HOH HOH . N 5 HOH A 32 432 14 HOH HOH . N 5 HOH A 33 433 81 HOH HOH . N 5 HOH A 34 434 112 HOH HOH . N 5 HOH A 35 435 116 HOH HOH . N 5 HOH A 36 436 147 HOH HOH . O 5 HOH B 1 401 159 HOH HOH . O 5 HOH B 2 402 151 HOH HOH . O 5 HOH B 3 403 144 HOH HOH . O 5 HOH B 4 404 29 HOH HOH . O 5 HOH B 5 405 143 HOH HOH . O 5 HOH B 6 406 137 HOH HOH . O 5 HOH B 7 407 47 HOH HOH . O 5 HOH B 8 408 22 HOH HOH . O 5 HOH B 9 409 54 HOH HOH . O 5 HOH B 10 410 41 HOH HOH . O 5 HOH B 11 411 60 HOH HOH . O 5 HOH B 12 412 25 HOH HOH . O 5 HOH B 13 413 154 HOH HOH . O 5 HOH B 14 414 48 HOH HOH . O 5 HOH B 15 415 131 HOH HOH . O 5 HOH B 16 416 53 HOH HOH . O 5 HOH B 17 417 97 HOH HOH . O 5 HOH B 18 418 103 HOH HOH . O 5 HOH B 19 419 19 HOH HOH . O 5 HOH B 20 420 43 HOH HOH . O 5 HOH B 21 421 141 HOH HOH . O 5 HOH B 22 422 134 HOH HOH . O 5 HOH B 23 423 104 HOH HOH . O 5 HOH B 24 424 21 HOH HOH . O 5 HOH B 25 425 75 HOH HOH . O 5 HOH B 26 426 150 HOH HOH . O 5 HOH B 27 427 156 HOH HOH . O 5 HOH B 28 428 139 HOH HOH . O 5 HOH B 29 429 138 HOH HOH . O 5 HOH B 30 430 155 HOH HOH . O 5 HOH B 31 431 50 HOH HOH . O 5 HOH B 32 432 136 HOH HOH . O 5 HOH B 33 433 145 HOH HOH . O 5 HOH B 34 434 152 HOH HOH . O 5 HOH B 35 435 10 HOH HOH . O 5 HOH B 36 436 153 HOH HOH . O 5 HOH B 37 437 132 HOH HOH . O 5 HOH B 38 438 148 HOH HOH . O 5 HOH B 39 439 146 HOH HOH . O 5 HOH B 40 440 149 HOH HOH . O 5 HOH B 41 441 142 HOH HOH . O 5 HOH B 42 442 135 HOH HOH . O 5 HOH B 43 443 52 HOH HOH . O 5 HOH B 44 444 133 HOH HOH . P 5 HOH C 1 401 26 HOH HOH . P 5 HOH C 2 402 158 HOH HOH . P 5 HOH C 3 403 62 HOH HOH . P 5 HOH C 4 404 28 HOH HOH . P 5 HOH C 5 405 161 HOH HOH . P 5 HOH C 6 406 164 HOH HOH . P 5 HOH C 7 407 157 HOH HOH . P 5 HOH C 8 408 23 HOH HOH . P 5 HOH C 9 409 63 HOH HOH . P 5 HOH C 10 410 64 HOH HOH . P 5 HOH C 11 411 61 HOH HOH . P 5 HOH C 12 412 27 HOH HOH . P 5 HOH C 13 413 86 HOH HOH . P 5 HOH C 14 414 59 HOH HOH . P 5 HOH C 15 415 165 HOH HOH . P 5 HOH C 16 416 49 HOH HOH . P 5 HOH C 17 417 210 HOH HOH . P 5 HOH C 18 418 68 HOH HOH . P 5 HOH C 19 419 166 HOH HOH . P 5 HOH C 20 420 88 HOH HOH . P 5 HOH C 21 421 162 HOH HOH . P 5 HOH C 22 422 185 HOH HOH . P 5 HOH C 23 423 163 HOH HOH . P 5 HOH C 24 424 24 HOH HOH . P 5 HOH C 25 425 191 HOH HOH . P 5 HOH C 26 426 184 HOH HOH . P 5 HOH C 27 427 102 HOH HOH . P 5 HOH C 28 428 30 HOH HOH . P 5 HOH C 29 429 160 HOH HOH . Q 5 HOH D 1 401 44 HOH HOH . Q 5 HOH D 2 402 34 HOH HOH . Q 5 HOH D 3 403 31 HOH HOH . Q 5 HOH D 4 404 36 HOH HOH . Q 5 HOH D 5 405 45 HOH HOH . Q 5 HOH D 6 406 177 HOH HOH . Q 5 HOH D 7 407 77 HOH HOH . Q 5 HOH D 8 408 72 HOH HOH . Q 5 HOH D 9 409 67 HOH HOH . Q 5 HOH D 10 410 107 HOH HOH . Q 5 HOH D 11 411 172 HOH HOH . Q 5 HOH D 12 412 181 HOH HOH . Q 5 HOH D 13 413 46 HOH HOH . Q 5 HOH D 14 414 179 HOH HOH . Q 5 HOH D 15 415 192 HOH HOH . Q 5 HOH D 16 416 80 HOH HOH . Q 5 HOH D 17 417 106 HOH HOH . Q 5 HOH D 18 418 169 HOH HOH . Q 5 HOH D 19 419 33 HOH HOH . Q 5 HOH D 20 420 70 HOH HOH . Q 5 HOH D 21 421 183 HOH HOH . Q 5 HOH D 22 422 176 HOH HOH . Q 5 HOH D 23 423 92 HOH HOH . Q 5 HOH D 24 424 173 HOH HOH . Q 5 HOH D 25 425 79 HOH HOH . Q 5 HOH D 26 426 3 HOH HOH . Q 5 HOH D 27 427 171 HOH HOH . Q 5 HOH D 28 428 51 HOH HOH . Q 5 HOH D 29 429 186 HOH HOH . Q 5 HOH D 30 430 99 HOH HOH . Q 5 HOH D 31 431 78 HOH HOH . Q 5 HOH D 32 432 55 HOH HOH . Q 5 HOH D 33 433 180 HOH HOH . Q 5 HOH D 34 434 5 HOH HOH . Q 5 HOH D 35 435 101 HOH HOH . Q 5 HOH D 36 436 73 HOH HOH . Q 5 HOH D 37 437 69 HOH HOH . Q 5 HOH D 38 438 100 HOH HOH . Q 5 HOH D 39 439 209 HOH HOH . Q 5 HOH D 40 440 32 HOH HOH . Q 5 HOH D 41 441 170 HOH HOH . Q 5 HOH D 42 442 56 HOH HOH . Q 5 HOH D 43 443 190 HOH HOH . Q 5 HOH D 44 444 105 HOH HOH . Q 5 HOH D 45 445 35 HOH HOH . Q 5 HOH D 46 446 188 HOH HOH . Q 5 HOH D 47 447 189 HOH HOH . Q 5 HOH D 48 448 182 HOH HOH . Q 5 HOH D 49 449 193 HOH HOH . Q 5 HOH D 50 450 40 HOH HOH . Q 5 HOH D 51 451 175 HOH HOH . Q 5 HOH D 52 452 174 HOH HOH . R 5 HOH E 1 401 123 HOH HOH . R 5 HOH E 2 402 200 HOH HOH . R 5 HOH E 3 403 114 HOH HOH . R 5 HOH E 4 404 168 HOH HOH . R 5 HOH E 5 405 167 HOH HOH . R 5 HOH E 6 406 113 HOH HOH . R 5 HOH E 7 407 196 HOH HOH . R 5 HOH E 8 408 71 HOH HOH . R 5 HOH E 9 409 203 HOH HOH . R 5 HOH E 10 410 39 HOH HOH . R 5 HOH E 11 411 96 HOH HOH . R 5 HOH E 12 412 84 HOH HOH . R 5 HOH E 13 413 208 HOH HOH . R 5 HOH E 14 414 42 HOH HOH . R 5 HOH E 15 415 93 HOH HOH . R 5 HOH E 16 416 195 HOH HOH . R 5 HOH E 17 417 202 HOH HOH . R 5 HOH E 18 418 38 HOH HOH . R 5 HOH E 19 419 206 HOH HOH . R 5 HOH E 20 420 201 HOH HOH . R 5 HOH E 21 421 11 HOH HOH . R 5 HOH E 22 422 205 HOH HOH . R 5 HOH E 23 423 91 HOH HOH . R 5 HOH E 24 424 197 HOH HOH . R 5 HOH E 25 425 95 HOH HOH . R 5 HOH E 26 426 83 HOH HOH . R 5 HOH E 27 427 204 HOH HOH . R 5 HOH E 28 428 198 HOH HOH . R 5 HOH E 29 429 124 HOH HOH . R 5 HOH E 30 430 110 HOH HOH . R 5 HOH E 31 431 76 HOH HOH . R 5 HOH E 32 432 66 HOH HOH . R 5 HOH E 33 433 199 HOH HOH . R 5 HOH E 34 434 207 HOH HOH . R 5 HOH E 35 435 85 HOH HOH . R 5 HOH E 36 436 178 HOH HOH . R 5 HOH E 37 437 37 HOH HOH . R 5 HOH E 38 438 187 HOH HOH . R 5 HOH E 39 439 194 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . I 3 58.046 87.123 27.121 1 40.82 ? O1 PG4 301 C 1 HETATM 2 C C1 PG4 . . . I 3 57.917 88.085 28.14 1 38.19 ? C1 PG4 301 C 1 HETATM 3 C C2 PG4 . . . I 3 56.563 88.79 28.017 1 39.48 ? C2 PG4 301 C 1 HETATM 4 O O2 PG4 . . . I 3 56.66 89.854 27.109 1 42.9 ? O2 PG4 301 C 1 HETATM 5 C C3 PG4 . . . I 3 56.151 91.059 27.617 1 43.32 ? C3 PG4 301 C 1 HETATM 6 C C4 PG4 . . . I 3 56.829 92.248 26.932 1 42.77 ? C4 PG4 301 C 1 HETATM 7 O O3 PG4 . . . I 3 58.164 92.353 27.354 1 49.57 ? O3 PG4 301 C 1 HETATM 8 C C5 PG4 . . . I 3 58.578 93.659 27.641 1 43.38 ? C5 PG4 301 C 1 HETATM 9 C C6 PG4 . . . I 3 59.618 93.726 28.767 1 51.66 ? C6 PG4 301 C 1 HETATM 10 O O4 PG4 . . . I 3 59.905 92.484 29.373 1 57.77 ? O4 PG4 301 C 1 HETATM 11 C C7 PG4 . . . I 3 60.394 92.591 30.694 1 48.88 ? C7 PG4 301 C 1 HETATM 12 C C8 PG4 . . . I 3 61.176 91.335 31.094 1 49.66 ? C8 PG4 301 C 1 HETATM 13 O O5 PG4 . . . I 3 60.312 90.393 31.675 1 50.28 ? O5 PG4 301 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #