data_5KZZ
#
_model_server_result.job_id            b_Did-XOAPZg-aPi6abGLw 
_model_server_result.datetime_utc      '2024-11-18 10:32:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kzz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":207}' 
#
_entry.id    5KZZ 
#
_exptl.entry_id    5KZZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.46 
_cell.angle_gamma         90 
_cell.entry_id            5KZZ 
_cell.length_a            67.656 
_cell.length_b            37.352 
_cell.length_c            43.151 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KZZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 10 A CYS 37 1_555 A SG CYS 124 A CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 16 A CYS 43 1_555 A SG CYS 80 A CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf3 A SG CYS 24 A CYS 51 1_555 A SG CYS 73 A CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf4 A SG CYS 64 A CYS 91 1_555 A SG CYS 100 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
disulf ? disulf5 A SG CYS 93 A CYS 120 1_555 A SG CYS 115 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc1 A NZ LYS 20 A LYS 47 1_555 E ZN ZN . A ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc2 A OD1 ASP 46 A ASP 73 1_555 E ZN ZN . A ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? 
metalc ? metalc3 A OE2 GLU 47 A GLU 74 1_555 G ZN ZN . A ZN 206 4_455 ? A ? ? ? ? ? ? ? ? ? ? 2.173 ? 
metalc ? metalc4 A OE2 GLU 47 A GLU 74 1_555 G ZN ZN . A ZN 206 4_455 ? B ? ? ? ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc5 A NE2 HIS 49 A HIS 76 1_555 F ZN ZN . A ZN 205 4_456 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc6 A OD1 ASP 50 A ASP 77 1_555 D ZN ZN . A ZN 203 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? 
metalc ? metalc7 A OD2 ASP 50 A ASP 77 1_555 D ZN ZN . A ZN 203 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc8 A OD1 ASP 66 A ASP 93 1_555 F ZN ZN . A ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? 
metalc ? metalc9 A OD2 ASP 111 A ASP 138 1_555 G ZN ZN . A ZN 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc10 A OE1 GLU 122 A GLU 149 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc11 A OE2 GLU 122 A GLU 149 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? 
metalc ? metalc12 A OE1 GLU 127 A GLU 154 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc13 A OE2 GLU 127 A GLU 154 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc14 B OXT ACT . A ACT 201 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc15 B O ACT . A ACT 201 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc16 C ZN ZN . A ZN 202 1_555 H O2 GOL . A GOL 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
metalc ? metalc17 C ZN ZN . A ZN 202 1_555 H O1 GOL . A GOL 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc18 D ZN ZN . A ZN 203 1_555 H O2 GOL . A GOL 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
metalc ? metalc19 D ZN ZN . A ZN 203 1_555 H O3 GOL . A GOL 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc20 E ZN ZN . A ZN 204 1_555 K O HOH . A HOH 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? 
metalc ? metalc21 E ZN ZN . A ZN 204 1_555 K O HOH . A HOH 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc22 F ZN ZN . A ZN 205 1_555 K O HOH . A HOH 365 4_446 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc23 F ZN ZN . A ZN 205 1_555 K O HOH . A HOH 370 4_446 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? 
metalc ? metalc24 G ZN ZN . A ZN 206 1_555 K O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc25 G ZN ZN . A ZN 206 1_555 K O HOH . A HOH 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 135 n n 
C1 C2 GOL sing 136 n n 
C1 H11 GOL sing 137 n n 
C1 H12 GOL sing 138 n n 
O1 HO1 GOL sing 139 n n 
C2 O2 GOL sing 140 n n 
C2 C3 GOL sing 141 n n 
C2 H2 GOL sing 142 n n 
O2 HO2 GOL sing 143 n n 
C3 O3 GOL sing 144 n n 
C3 H31 GOL sing 145 n n 
C3 H32 GOL sing 146 n n 
O3 HO3 GOL sing 147 n n 
#
_atom_sites.entry_id                     5KZZ 
_atom_sites.fract_transf_matrix[1][1]    0.014781 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001934 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.026772 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023372 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ACT A 1 201 1 ACT ACT . 
C 3 ZN A 1 202 2 ZN ZN . 
D 3 ZN A 1 203 3 ZN ZN . 
E 3 ZN A 1 204 6 ZN ZN . 
F 3 ZN A 1 205 5 ZN ZN . 
G 3 ZN A 1 206 7 ZN ZN . 
H 4 GOL A 1 207 4 GOL GOL . 
I 2 ACT A 1 208 8 ACT ACT . 
J 4 GOL A 1 209 9 GOL GOL . 
K 5 HOH A 1 301 37 HOH HOH . 
K 5 HOH A 2 302 35 HOH HOH . 
K 5 HOH A 3 303 32 HOH HOH . 
K 5 HOH A 4 304 17 HOH HOH . 
K 5 HOH A 5 305 6 HOH HOH . 
K 5 HOH A 6 306 30 HOH HOH . 
K 5 HOH A 7 307 111 HOH HOH . 
K 5 HOH A 8 308 18 HOH HOH . 
K 5 HOH A 9 309 23 HOH HOH . 
K 5 HOH A 10 310 50 HOH HOH . 
K 5 HOH A 11 311 92 HOH HOH . 
K 5 HOH A 12 312 25 HOH HOH . 
K 5 HOH A 13 313 16 HOH HOH . 
K 5 HOH A 14 314 64 HOH HOH . 
K 5 HOH A 15 315 83 HOH HOH . 
K 5 HOH A 16 316 29 HOH HOH . 
K 5 HOH A 17 317 5 HOH HOH . 
K 5 HOH A 18 318 110 HOH HOH . 
K 5 HOH A 19 319 39 HOH HOH . 
K 5 HOH A 20 320 90 HOH HOH . 
K 5 HOH A 21 321 41 HOH HOH . 
K 5 HOH A 22 322 8 HOH HOH . 
K 5 HOH A 23 323 107 HOH HOH . 
K 5 HOH A 24 324 38 HOH HOH . 
K 5 HOH A 25 325 7 HOH HOH . 
K 5 HOH A 26 326 91 HOH HOH . 
K 5 HOH A 27 327 54 HOH HOH . 
K 5 HOH A 28 328 102 HOH HOH . 
K 5 HOH A 29 329 4 HOH HOH . 
K 5 HOH A 30 330 56 HOH HOH . 
K 5 HOH A 31 331 45 HOH HOH . 
K 5 HOH A 32 332 20 HOH HOH . 
K 5 HOH A 33 333 43 HOH HOH . 
K 5 HOH A 34 334 69 HOH HOH . 
K 5 HOH A 35 335 72 HOH HOH . 
K 5 HOH A 36 336 52 HOH HOH . 
K 5 HOH A 37 337 62 HOH HOH . 
K 5 HOH A 38 338 13 HOH HOH . 
K 5 HOH A 39 339 105 HOH HOH . 
K 5 HOH A 40 340 47 HOH HOH . 
K 5 HOH A 41 341 60 HOH HOH . 
K 5 HOH A 42 342 19 HOH HOH . 
K 5 HOH A 43 343 9 HOH HOH . 
K 5 HOH A 44 344 103 HOH HOH . 
K 5 HOH A 45 345 12 HOH HOH . 
K 5 HOH A 46 346 67 HOH HOH . 
K 5 HOH A 47 347 114 HOH HOH . 
K 5 HOH A 48 348 26 HOH HOH . 
K 5 HOH A 49 349 55 HOH HOH . 
K 5 HOH A 50 350 34 HOH HOH . 
K 5 HOH A 51 351 40 HOH HOH . 
K 5 HOH A 52 352 94 HOH HOH . 
K 5 HOH A 53 353 115 HOH HOH . 
K 5 HOH A 54 354 73 HOH HOH . 
K 5 HOH A 55 355 48 HOH HOH . 
K 5 HOH A 56 356 109 HOH HOH . 
K 5 HOH A 57 357 21 HOH HOH . 
K 5 HOH A 58 358 108 HOH HOH . 
K 5 HOH A 59 359 78 HOH HOH . 
K 5 HOH A 60 360 42 HOH HOH . 
K 5 HOH A 61 361 121 HOH HOH . 
K 5 HOH A 62 362 86 HOH HOH . 
K 5 HOH A 63 363 106 HOH HOH . 
K 5 HOH A 64 364 71 HOH HOH . 
K 5 HOH A 65 365 2 HOH HOH . 
K 5 HOH A 66 366 76 HOH HOH . 
K 5 HOH A 67 367 77 HOH HOH . 
K 5 HOH A 68 368 104 HOH HOH . 
K 5 HOH A 69 369 117 HOH HOH . 
K 5 HOH A 70 370 101 HOH HOH . 
K 5 HOH A 71 371 44 HOH HOH . 
K 5 HOH A 72 372 93 HOH HOH . 
K 5 HOH A 73 373 89 HOH HOH . 
K 5 HOH A 74 374 57 HOH HOH . 
K 5 HOH A 75 375 97 HOH HOH . 
K 5 HOH A 76 376 95 HOH HOH . 
K 5 HOH A 77 377 70 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 4 -12.84 -22.632 11.521 1 22.93 ? C1 GOL 207 A 1 
HETATM 2 O O1 GOL . . . H 4 -12.928 -21.216 11.471 1 23.59 ? O1 GOL 207 A 1 
HETATM 3 C C2 GOL . . . H 4 -13.953 -23.163 12.4 1 22.03 ? C2 GOL 207 A 1 
HETATM 4 O O2 GOL . . . H 4 -15.199 -22.676 11.946 1 18.52 ? O2 GOL 207 A 1 
HETATM 5 C C3 GOL . . . H 4 -13.984 -24.668 12.275 1 23.03 ? C3 GOL 207 A 1 
HETATM 6 O O3 GOL . . . H 4 -14.463 -24.954 10.979 1 22.15 ? O3 GOL 207 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           239 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#