data_5L07
#
_model_server_result.job_id            3y4wZ6-zOot1qgQAtlL8tQ 
_model_server_result.datetime_utc      '2024-12-15 02:02:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5l07 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":201}' 
#
_entry.id    5L07 
#
_exptl.entry_id    5L07 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5L07 
_cell.length_a            64.371 
_cell.length_b            123.399 
_cell.length_c            106.907 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5L07 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 64.371 0 53.4535 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 J N N 
? 4 M N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C VAL 35 A VAL 35 1_555 A N MSE 36 A MSE 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C MSE 36 A MSE 36 1_555 A N ASN 37 A ASN 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 A C ASN 120 A ASN 120 1_555 A N MSE 121 A MSE 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale4 A C MSE 121 A MSE 121 1_555 A N ALA 122 A ALA 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale5 A C GLN 148 A GLN 148 1_555 A N MSE 149 A MSE 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale6 A C MSE 149 A MSE 149 1_555 A N LEU 150 A LEU 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale7 A C LYS 157 A LYS 157 1_555 A N MSE 158 A MSE 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale8 A C MSE 158 A MSE 158 1_555 A N LEU 159 A LEU 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale9 B C VAL 35 B VAL 35 1_555 B N MSE 36 B MSE 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale10 B C MSE 36 B MSE 36 1_555 B N ASN 37 B ASN 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale11 B C ASN 120 B ASN 120 1_555 B N MSE 121 B MSE 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale12 B C MSE 121 B MSE 121 1_555 B N ALA 122 B ALA 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale13 B C GLN 148 B GLN 148 1_555 B N MSE 149 B MSE 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale14 B C MSE 149 B MSE 149 1_555 B N LEU 150 B LEU 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale15 B C LYS 157 B LYS 157 1_555 B N MSE 158 B MSE 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale16 B C MSE 158 B MSE 158 1_555 B N LEU 159 B LEU 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 77 n n 
C1 C2 EDO sing 78 n n 
C1 H11 EDO sing 79 n n 
C1 H12 EDO sing 80 n n 
O1 HO1 EDO sing 81 n n 
C2 O2 EDO sing 82 n n 
C2 H21 EDO sing 83 n n 
C2 H22 EDO sing 84 n n 
O2 HO2 EDO sing 85 n n 
#
_atom_sites.entry_id                     5L07 
_atom_sites.fract_transf_matrix[1][1]    0.015535 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008104 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009354 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 201 200 SO4 SO4 . 
D 2 SO4 A 1 202 201 SO4 SO4 . 
E 2 SO4 A 1 203 203 SO4 SO4 . 
F 2 SO4 A 1 204 204 SO4 SO4 . 
G 3 ACY A 1 205 205 ACY ACY . 
H 3 ACY A 1 206 207 ACY ACY . 
I 4 EDO A 1 207 208 EDO EDO . 
J 4 EDO B 1 201 206 EDO EDO . 
K 3 ACY B 1 202 201 ACY ACY . 
L 3 ACY B 1 203 202 ACY ACY . 
M 4 EDO B 1 204 203 EDO EDO . 
N 4 EDO B 1 205 204 EDO EDO . 
O 4 EDO B 1 206 205 EDO EDO . 
P 4 EDO B 1 207 206 EDO EDO . 
Q 3 ACY B 1 208 207 ACY ACY . 
R 5 HOH A 1 301 20 HOH HOH . 
R 5 HOH A 2 302 29 HOH HOH . 
R 5 HOH A 3 303 38 HOH HOH . 
R 5 HOH A 4 304 69 HOH HOH . 
R 5 HOH A 5 305 39 HOH HOH . 
R 5 HOH A 6 306 45 HOH HOH . 
R 5 HOH A 7 307 23 HOH HOH . 
R 5 HOH A 8 308 12 HOH HOH . 
R 5 HOH A 9 309 68 HOH HOH . 
R 5 HOH A 10 310 3 HOH HOH . 
R 5 HOH A 11 311 6 HOH HOH . 
R 5 HOH A 12 312 46 HOH HOH . 
R 5 HOH A 13 313 4 HOH HOH . 
R 5 HOH A 14 314 17 HOH HOH . 
R 5 HOH A 15 315 41 HOH HOH . 
R 5 HOH A 16 316 42 HOH HOH . 
R 5 HOH A 17 317 43 HOH HOH . 
R 5 HOH A 18 318 28 HOH HOH . 
R 5 HOH A 19 319 34 HOH HOH . 
R 5 HOH A 20 320 57 HOH HOH . 
R 5 HOH A 21 321 22 HOH HOH . 
R 5 HOH A 22 322 62 HOH HOH . 
R 5 HOH A 23 323 49 HOH HOH . 
R 5 HOH A 24 324 16 HOH HOH . 
R 5 HOH A 25 325 65 HOH HOH . 
R 5 HOH A 26 326 27 HOH HOH . 
R 5 HOH A 27 327 8 HOH HOH . 
R 5 HOH A 28 328 25 HOH HOH . 
R 5 HOH A 29 329 53 HOH HOH . 
R 5 HOH A 30 330 58 HOH HOH . 
S 5 HOH B 1 301 66 HOH HOH . 
S 5 HOH B 2 302 40 HOH HOH . 
S 5 HOH B 3 303 37 HOH HOH . 
S 5 HOH B 4 304 73 HOH HOH . 
S 5 HOH B 5 305 9 HOH HOH . 
S 5 HOH B 6 306 26 HOH HOH . 
S 5 HOH B 7 307 24 HOH HOH . 
S 5 HOH B 8 308 52 HOH HOH . 
S 5 HOH B 9 309 33 HOH HOH . 
S 5 HOH B 10 310 64 HOH HOH . 
S 5 HOH B 11 311 71 HOH HOH . 
S 5 HOH B 12 312 2 HOH HOH . 
S 5 HOH B 13 313 59 HOH HOH . 
S 5 HOH B 14 314 48 HOH HOH . 
S 5 HOH B 15 315 14 HOH HOH . 
S 5 HOH B 16 316 60 HOH HOH . 
S 5 HOH B 17 317 47 HOH HOH . 
S 5 HOH B 18 318 11 HOH HOH . 
S 5 HOH B 19 319 61 HOH HOH . 
S 5 HOH B 20 320 56 HOH HOH . 
S 5 HOH B 21 321 5 HOH HOH . 
S 5 HOH B 22 322 13 HOH HOH . 
S 5 HOH B 23 323 10 HOH HOH . 
S 5 HOH B 24 324 7 HOH HOH . 
S 5 HOH B 25 325 31 HOH HOH . 
S 5 HOH B 26 326 21 HOH HOH . 
S 5 HOH B 27 327 30 HOH HOH . 
S 5 HOH B 28 328 19 HOH HOH . 
S 5 HOH B 29 329 1 HOH HOH . 
S 5 HOH B 30 330 44 HOH HOH . 
S 5 HOH B 31 331 18 HOH HOH . 
S 5 HOH B 32 332 50 HOH HOH . 
S 5 HOH B 33 333 63 HOH HOH . 
S 5 HOH B 34 334 35 HOH HOH . 
S 5 HOH B 35 335 67 HOH HOH . 
S 5 HOH B 36 336 51 HOH HOH . 
S 5 HOH B 37 337 55 HOH HOH . 
S 5 HOH B 38 338 54 HOH HOH . 
S 5 HOH B 39 339 15 HOH HOH . 
S 5 HOH B 40 340 32 HOH HOH . 
S 5 HOH B 41 341 70 HOH HOH . 
S 5 HOH B 42 342 75 HOH HOH . 
S 5 HOH B 43 343 74 HOH HOH . 
S 5 HOH B 44 344 72 HOH HOH . 
S 5 HOH B 45 345 36 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . J 4 1.373 12.782 37.398 1 78.51 ? C1 EDO 201 B 1 
HETATM 2 O O1 EDO . . . J 4 2.189 13.079 36.257 1 81.56 ? O1 EDO 201 B 1 
HETATM 3 C C2 EDO . . . J 4 2.027 13.388 38.63 1 74.88 ? C2 EDO 201 B 1 
HETATM 4 O O2 EDO . . . J 4 1.101 13.307 39.719 1 75.76 ? O2 EDO 201 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#