data_5L0H
#
_model_server_result.job_id            HzaLGmB6uQ3lhQHnQgBujg 
_model_server_result.datetime_utc      '2024-12-23 02:22:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5l0h 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1202}' 
#
_entry.id    5L0H 
#
_exptl.entry_id    5L0H 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              746.566 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5L0H 
_cell.length_a            80.951 
_cell.length_b            80.951 
_cell.length_c            131.762 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5L0H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        181 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 64 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C25 H49 O19 P3' 
_chem_comp.formula_weight    746.566 
_chem_comp.id                PIO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'dioctanoyl l-alpha-phosphatidyl-d-myo-inositol 4,5-diphosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PIO sing 276 n n 
C1 C2 PIO sing 277 n n 
C1 C6 PIO sing 278 n n 
C1 H1 PIO sing 279 n n 
O1 P1 PIO sing 280 n n 
P1 O11 PIO sing 281 n n 
O11 H11 PIO sing 282 n n 
P1 O12 PIO doub 283 n n 
P1 O13 PIO sing 284 n n 
C2 O2 PIO sing 285 n n 
C2 C3 PIO sing 286 n n 
C2 H2 PIO sing 287 n n 
O2 HO2 PIO sing 288 n n 
C3 O3 PIO sing 289 n n 
C3 C4 PIO sing 290 n n 
C3 H3 PIO sing 291 n n 
O3 HO3 PIO sing 292 n n 
C4 O4 PIO sing 293 n n 
C4 C5 PIO sing 294 n n 
C4 H4 PIO sing 295 n n 
O4 P4 PIO sing 296 n n 
P4 O41 PIO sing 297 n n 
O41 H41 PIO sing 298 n n 
P4 O42 PIO doub 299 n n 
P4 O43 PIO sing 300 n n 
O43 H43 PIO sing 301 n n 
C5 O5 PIO sing 302 n n 
C5 C6 PIO sing 303 n n 
C5 H5 PIO sing 304 n n 
O5 P5 PIO sing 305 n n 
P5 O51 PIO sing 306 n n 
O51 H51 PIO sing 307 n n 
P5 O52 PIO sing 308 n n 
O52 H52 PIO sing 309 n n 
P5 O53 PIO doub 310 n n 
C6 O6 PIO sing 311 n n 
C6 H6 PIO sing 312 n n 
O6 HO6 PIO sing 313 n n 
O13 C1C PIO sing 314 n n 
C1A O1A PIO doub 315 n n 
C1A C2A PIO sing 316 n n 
C1A O2C PIO sing 317 n n 
C1B O1B PIO doub 318 n n 
C1B C2B PIO sing 319 n n 
C1B O3C PIO sing 320 n n 
C1C C2C PIO sing 321 n n 
C1C H1C PIO sing 322 n n 
C1C H1CA PIO sing 323 n n 
C2A C3A PIO sing 324 n n 
C2A H2A PIO sing 325 n n 
C2A H2AA PIO sing 326 n n 
C2B C3B PIO sing 327 n n 
C2B H2B PIO sing 328 n n 
C2B H2BA PIO sing 329 n n 
C2C O2C PIO sing 330 n n 
C2C C3C PIO sing 331 n n 
C2C H2C PIO sing 332 n n 
C3A C4A PIO sing 333 n n 
C3A H3A PIO sing 334 n n 
C3A H3AA PIO sing 335 n n 
C3B C4B PIO sing 336 n n 
C3B H3B PIO sing 337 n n 
C3B H3BA PIO sing 338 n n 
C3C O3C PIO sing 339 n n 
C3C H3C PIO sing 340 n n 
C3C H3CA PIO sing 341 n n 
C4A C5A PIO sing 342 n n 
C4A H4A PIO sing 343 n n 
C4A H4AA PIO sing 344 n n 
C4B C5B PIO sing 345 n n 
C4B H4B PIO sing 346 n n 
C4B H4BA PIO sing 347 n n 
C5A C6A PIO sing 348 n n 
C5A H5A PIO sing 349 n n 
C5A H5AA PIO sing 350 n n 
C5B C6B PIO sing 351 n n 
C5B H5B PIO sing 352 n n 
C5B H5BA PIO sing 353 n n 
C6A C7A PIO sing 354 n n 
C6A H6A PIO sing 355 n n 
C6A H6AA PIO sing 356 n n 
C6B C7B PIO sing 357 n n 
C6B H6B PIO sing 358 n n 
C6B H6BA PIO sing 359 n n 
C7A C8A PIO sing 360 n n 
C7A H7A PIO sing 361 n n 
C7A H7AA PIO sing 362 n n 
C7B C8B PIO sing 363 n n 
C7B H7B PIO sing 364 n n 
C7B H7BA PIO sing 365 n n 
C8A H8A PIO sing 366 n n 
C8A H8AA PIO sing 367 n n 
C8A H8AB PIO sing 368 n n 
C8B H8B PIO sing 369 n n 
C8B H8BA PIO sing 370 n n 
C8B H8BB PIO sing 371 n n 
#
_atom_sites.entry_id                     5L0H 
_atom_sites.fract_transf_matrix[1][1]    0.012353 
_atom_sites.fract_transf_matrix[1][2]    0.007132 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014264 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007589 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PEG A 1 1201 1500 PEG PEG . 
C 3 PIO A 1 1202 2000 PIO PIO . 
D 4 PO4 A 1 1203 2001 PO4 PO4 . 
E 4 PO4 A 1 1204 2002 PO4 PO4 . 
F 5 HOH A 1 1301 7 HOH HOH . 
F 5 HOH A 2 1302 14 HOH HOH . 
F 5 HOH A 3 1303 5 HOH HOH . 
F 5 HOH A 4 1304 3 HOH HOH . 
F 5 HOH A 5 1305 17 HOH HOH . 
F 5 HOH A 6 1306 21 HOH HOH . 
F 5 HOH A 7 1307 12 HOH HOH . 
F 5 HOH A 8 1308 9 HOH HOH . 
F 5 HOH A 9 1309 16 HOH HOH . 
F 5 HOH A 10 1310 20 HOH HOH . 
F 5 HOH A 11 1311 10 HOH HOH . 
F 5 HOH A 12 1312 18 HOH HOH . 
F 5 HOH A 13 1313 15 HOH HOH . 
F 5 HOH A 14 1314 2 HOH HOH . 
F 5 HOH A 15 1315 13 HOH HOH . 
F 5 HOH A 16 1316 4 HOH HOH . 
F 5 HOH A 17 1317 1 HOH HOH . 
F 5 HOH A 18 1318 19 HOH HOH . 
F 5 HOH A 19 1319 6 HOH HOH . 
F 5 HOH A 20 1320 8 HOH HOH . 
F 5 HOH A 21 1321 11 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PIO . . . C 3 42.962 27.85 33.197 1 194.02 ? C1 PIO 1202 A 1 
HETATM 2 O O1 PIO . . . C 3 42.021 27.981 34.288 1 194.78 ? O1 PIO 1202 A 1 
HETATM 3 P P1 PIO . . . C 3 40.421 28.279 34.097 1 196.69 ? P1 PIO 1202 A 1 
HETATM 4 C C2 PIO . . . C 3 44.292 27.312 33.722 1 193.96 ? C2 PIO 1202 A 1 
HETATM 5 O O2 PIO . . . C 3 44.784 28.055 34.836 1 193.94 ? O2 PIO 1202 A 1 
HETATM 6 C C3 PIO . . . C 3 45.326 27.239 32.603 1 193.96 ? C3 PIO 1202 A 1 
HETATM 7 O O3 PIO . . . C 3 46.546 26.713 33.11 1 194.36 ? O3 PIO 1202 A 1 
HETATM 8 C C4 PIO . . . C 3 45.562 28.621 32.001 1 193.42 ? C4 PIO 1202 A 1 
HETATM 9 O O4 PIO . . . C 3 46.437 28.441 30.865 1 191.62 ? O4 PIO 1202 A 1 
HETATM 10 P P4 PIO . . . C 3 48.062 28.349 30.702 1 189 ? P4 PIO 1202 A 1 
HETATM 11 C C5 PIO . . . C 3 44.276 29.287 31.526 1 194 ? C5 PIO 1202 A 1 
HETATM 12 O O5 PIO . . . C 3 44.568 30.689 31.319 1 194.38 ? O5 PIO 1202 A 1 
HETATM 13 P P5 PIO . . . C 3 43.713 32.092 31.083 1 194.09 ? P5 PIO 1202 A 1 
HETATM 14 C C6 PIO . . . C 3 43.119 29.219 32.528 1 193.86 ? C6 PIO 1202 A 1 
HETATM 15 O O6 PIO . . . C 3 41.917 29.522 31.83 1 193.49 ? O6 PIO 1202 A 1 
HETATM 16 O O11 PIO . . . C 3 40.491 29.807 34.096 1 197.35 ? O11 PIO 1202 A 1 
HETATM 17 O O12 PIO . . . C 3 39.88 27.624 32.883 1 197.06 ? O12 PIO 1202 A 1 
HETATM 18 O O13 PIO . . . C 3 39.488 28.17 35.441 1 197.22 ? O13 PIO 1202 A 1 
HETATM 19 C C1A PIO . . . C 3 35.237 30.306 35.94 1 192.61 ? C1A PIO 1202 A 1 
HETATM 20 O O1A PIO . . . C 3 35.64 31.427 35.782 1 192.46 ? O1A PIO 1202 A 1 
HETATM 21 C C1B PIO . . . C 3 37.371 31.197 31.914 1 195.39 ? C1B PIO 1202 A 1 
HETATM 22 O O1B PIO . . . C 3 38.033 30.504 31.185 1 195.08 ? O1B PIO 1202 A 1 
HETATM 23 C C1C PIO . . . C 3 38.04 28.039 35.373 1 196.67 ? C1C PIO 1202 A 1 
HETATM 24 C C2A PIO . . . C 3 33.9 29.959 36.524 1 191.85 ? C2A PIO 1202 A 1 
HETATM 25 C C2B PIO . . . C 3 36.968 32.61 31.612 1 195.02 ? C2B PIO 1202 A 1 
HETATM 26 C C2C PIO . . . C 3 37.271 29.296 35.016 1 195.61 ? C2C PIO 1202 A 1 
HETATM 27 O O2C PIO . . . C 3 35.937 29.192 35.623 1 193.91 ? O2C PIO 1202 A 1 
HETATM 28 C C3C PIO . . . C 3 37.101 29.426 33.518 1 195.96 ? C3C PIO 1202 A 1 
HETATM 29 O O3C PIO . . . C 3 36.891 30.8 33.107 1 195.95 ? O3C PIO 1202 A 1 
HETATM 30 O O41 PIO . . . C 3 48.521 29.807 30.753 1 189.02 ? O41 PIO 1202 A 1 
HETATM 31 O O42 PIO . . . C 3 48.819 27.48 31.64 1 187.75 ? O42 PIO 1202 A 1 
HETATM 32 O O43 PIO . . . C 3 48.145 27.876 29.247 1 188.48 ? O43 PIO 1202 A 1 
HETATM 33 O O51 PIO . . . C 3 42.382 31.745 30.4 1 194.1 ? O51 PIO 1202 A 1 
HETATM 34 O O52 PIO . . . C 3 43.427 32.467 32.542 1 193.45 ? O52 PIO 1202 A 1 
HETATM 35 O O53 PIO . . . C 3 44.447 33.179 30.37 1 194.22 ? O53 PIO 1202 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           65 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           35 
#