data_5L0M # _model_server_result.job_id w_Ww9aHe0kEn4QOfWAJPBA _model_server_result.datetime_utc '2024-11-07 14:37:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l0m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 5L0M # _exptl.entry_id 5L0M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5L0M _cell.length_a 40.931 _cell.length_b 40.931 _cell.length_c 105.055 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L0M _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 11 A CYS 86 1_555 E ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc2 A SG CYS 14 A CYS 89 1_555 E ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc3 A SG CYS 28 A CYS 103 1_555 E ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc4 A SG CYS 31 A CYS 106 1_555 E ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc5 A SG CYS 47 A CYS 122 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc6 A SG CYS 53 A CYS 128 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc7 A SG CYS 63 A CYS 138 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc8 A SG CYS 66 A CYS 141 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? hydrog WATSON-CRICK hydrog1 B N3 DC 1 C DC 89 1_555 C N1 DG 12 B DG 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N4 DC 1 C DC 89 1_555 C O6 DG 12 B DG 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O2 DC 1 C DC 89 1_555 C N2 DG 12 B DG 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N3 DT 2 C DT 90 1_555 C N1 DA 11 B DA 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O4 DT 2 C DT 90 1_555 C N6 DA 11 B DA 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 DA 3 C DA 91 1_555 C N3 DT 10 B DT 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N6 DA 3 C DA 91 1_555 C O4 DT 10 B DT 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N1 DG 4 C DG 92 1_555 C N3 DC 9 B DC 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N2 DG 4 C DG 92 1_555 C O2 DC 9 B DC 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B O6 DG 4 C DG 92 1_555 C N4 DC 9 B DC 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N3 DC 5 C DC 93 1_555 C N1 DG 8 B DG 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N4 DC 5 C DC 93 1_555 C O6 DG 8 B DG 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B O2 DC 5 C DC 93 1_555 C N2 DG 8 B DG 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N3 DC 6 C DC 94 1_555 C N1 DG 7 B DG 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N4 DC 6 C DC 94 1_555 C O6 DG 7 B DG 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B O2 DC 6 C DC 94 1_555 C N2 DG 7 B DG 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N3 DT 7 C DT 95 1_555 C N1 DA 6 B DA 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B O4 DT 7 C DT 95 1_555 C N6 DA 6 B DA 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N3 DT 8 C DT 96 1_555 C N1 DA 5 B DA 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B O4 DT 8 C DT 96 1_555 C N6 DA 5 B DA 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N1 DG 9 C DG 97 1_555 C N3 DC 4 B DC 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N2 DG 9 C DG 97 1_555 C O2 DC 4 B DC 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B O6 DG 9 C DG 97 1_555 C N4 DC 4 B DC 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N1 DA 10 C DA 98 1_555 C N3 DT 3 B DT 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B N6 DA 10 C DA 98 1_555 C O4 DT 3 B DT 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N3 DC 11 C DC 99 1_555 C N1 DG 2 B DG 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B N4 DC 11 C DC 99 1_555 C O6 DG 2 B DG 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B O2 DC 11 C DC 99 1_555 C N2 DG 2 B DG 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 B N3 DC 12 C DC 100 1_555 C N1 DG 1 B DG 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 B N4 DC 12 C DC 100 1_555 C O6 DG 1 B DG 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 B O2 DC 12 C DC 100 1_555 C N2 DG 1 B DG 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5L0M _atom_sites.fract_transf_matrix[1][1] 0.024431 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024431 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009519 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN A 1 201 1 ZN ZN . E 4 ZN A 1 202 2 ZN ZN . F 5 GOL C 1 201 1 GOL GOL . G 6 HOH A 1 301 15 HOH HOH . G 6 HOH A 2 302 45 HOH HOH . G 6 HOH A 3 303 30 HOH HOH . G 6 HOH A 4 304 3 HOH HOH . G 6 HOH A 5 305 6 HOH HOH . G 6 HOH A 6 306 44 HOH HOH . G 6 HOH A 7 307 2 HOH HOH . G 6 HOH A 8 308 16 HOH HOH . G 6 HOH A 9 309 36 HOH HOH . G 6 HOH A 10 310 5 HOH HOH . G 6 HOH A 11 311 28 HOH HOH . G 6 HOH A 12 312 46 HOH HOH . G 6 HOH A 13 313 23 HOH HOH . G 6 HOH A 14 314 42 HOH HOH . G 6 HOH A 15 315 41 HOH HOH . G 6 HOH A 16 316 20 HOH HOH . G 6 HOH A 17 317 29 HOH HOH . G 6 HOH A 18 318 34 HOH HOH . G 6 HOH A 19 319 13 HOH HOH . G 6 HOH A 20 320 31 HOH HOH . G 6 HOH A 21 321 37 HOH HOH . G 6 HOH A 22 322 8 HOH HOH . G 6 HOH A 23 323 21 HOH HOH . G 6 HOH A 24 324 38 HOH HOH . G 6 HOH A 25 325 25 HOH HOH . G 6 HOH A 26 326 12 HOH HOH . G 6 HOH A 27 327 48 HOH HOH . G 6 HOH A 28 328 14 HOH HOH . H 6 HOH C 1 301 50 HOH HOH . H 6 HOH C 2 302 17 HOH HOH . H 6 HOH C 3 303 32 HOH HOH . H 6 HOH C 4 304 35 HOH HOH . H 6 HOH C 5 305 18 HOH HOH . H 6 HOH C 6 306 27 HOH HOH . H 6 HOH C 7 307 40 HOH HOH . H 6 HOH C 8 308 24 HOH HOH . H 6 HOH C 9 309 1 HOH HOH . H 6 HOH C 10 310 49 HOH HOH . H 6 HOH C 11 311 47 HOH HOH . H 6 HOH C 12 312 10 HOH HOH . I 6 HOH B 1 201 4 HOH HOH . I 6 HOH B 2 202 33 HOH HOH . I 6 HOH B 3 203 43 HOH HOH . I 6 HOH B 4 204 7 HOH HOH . I 6 HOH B 5 205 9 HOH HOH . I 6 HOH B 6 206 39 HOH HOH . I 6 HOH B 7 207 22 HOH HOH . I 6 HOH B 8 208 19 HOH HOH . I 6 HOH B 9 209 26 HOH HOH . I 6 HOH B 10 210 11 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 66.478 _atom_site.Cartn_y 7.771 _atom_site.Cartn_z -0.943 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 54.57 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #