data_5L0M # _model_server_result.job_id XXVl4eZ4xhc5WN0MWC-MzA _model_server_result.datetime_utc '2025-01-05 01:39:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l0m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 5L0M # _exptl.entry_id 5L0M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5L0M _cell.length_a 40.931 _cell.length_b 40.931 _cell.length_c 105.055 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L0M _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 11 A CYS 86 1_555 E ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc2 A SG CYS 14 A CYS 89 1_555 E ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc3 A SG CYS 28 A CYS 103 1_555 E ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc4 A SG CYS 31 A CYS 106 1_555 E ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc5 A SG CYS 47 A CYS 122 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc6 A SG CYS 53 A CYS 128 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc7 A SG CYS 63 A CYS 138 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc8 A SG CYS 66 A CYS 141 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? hydrog WATSON-CRICK hydrog1 B N3 DC 1 C DC 89 1_555 C N1 DG 12 B DG 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N4 DC 1 C DC 89 1_555 C O6 DG 12 B DG 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O2 DC 1 C DC 89 1_555 C N2 DG 12 B DG 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N3 DT 2 C DT 90 1_555 C N1 DA 11 B DA 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O4 DT 2 C DT 90 1_555 C N6 DA 11 B DA 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 DA 3 C DA 91 1_555 C N3 DT 10 B DT 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N6 DA 3 C DA 91 1_555 C O4 DT 10 B DT 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N1 DG 4 C DG 92 1_555 C N3 DC 9 B DC 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N2 DG 4 C DG 92 1_555 C O2 DC 9 B DC 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B O6 DG 4 C DG 92 1_555 C N4 DC 9 B DC 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N3 DC 5 C DC 93 1_555 C N1 DG 8 B DG 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N4 DC 5 C DC 93 1_555 C O6 DG 8 B DG 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B O2 DC 5 C DC 93 1_555 C N2 DG 8 B DG 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N3 DC 6 C DC 94 1_555 C N1 DG 7 B DG 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N4 DC 6 C DC 94 1_555 C O6 DG 7 B DG 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B O2 DC 6 C DC 94 1_555 C N2 DG 7 B DG 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N3 DT 7 C DT 95 1_555 C N1 DA 6 B DA 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B O4 DT 7 C DT 95 1_555 C N6 DA 6 B DA 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N3 DT 8 C DT 96 1_555 C N1 DA 5 B DA 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B O4 DT 8 C DT 96 1_555 C N6 DA 5 B DA 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N1 DG 9 C DG 97 1_555 C N3 DC 4 B DC 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N2 DG 9 C DG 97 1_555 C O2 DC 4 B DC 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B O6 DG 9 C DG 97 1_555 C N4 DC 4 B DC 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N1 DA 10 C DA 98 1_555 C N3 DT 3 B DT 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B N6 DA 10 C DA 98 1_555 C O4 DT 3 B DT 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N3 DC 11 C DC 99 1_555 C N1 DG 2 B DG 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B N4 DC 11 C DC 99 1_555 C O6 DG 2 B DG 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B O2 DC 11 C DC 99 1_555 C N2 DG 2 B DG 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 B N3 DC 12 C DC 100 1_555 C N1 DG 1 B DG 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 B N4 DC 12 C DC 100 1_555 C O6 DG 1 B DG 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 B O2 DC 12 C DC 100 1_555 C N2 DG 1 B DG 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 278 n n C1 C2 GOL sing 279 n n C1 H11 GOL sing 280 n n C1 H12 GOL sing 281 n n O1 HO1 GOL sing 282 n n C2 O2 GOL sing 283 n n C2 C3 GOL sing 284 n n C2 H2 GOL sing 285 n n O2 HO2 GOL sing 286 n n C3 O3 GOL sing 287 n n C3 H31 GOL sing 288 n n C3 H32 GOL sing 289 n n O3 HO3 GOL sing 290 n n # _atom_sites.entry_id 5L0M _atom_sites.fract_transf_matrix[1][1] 0.024431 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024431 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009519 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN A 1 201 1 ZN ZN . E 4 ZN A 1 202 2 ZN ZN . F 5 GOL C 1 201 1 GOL GOL . G 6 HOH A 1 301 15 HOH HOH . G 6 HOH A 2 302 45 HOH HOH . G 6 HOH A 3 303 30 HOH HOH . G 6 HOH A 4 304 3 HOH HOH . G 6 HOH A 5 305 6 HOH HOH . G 6 HOH A 6 306 44 HOH HOH . G 6 HOH A 7 307 2 HOH HOH . G 6 HOH A 8 308 16 HOH HOH . G 6 HOH A 9 309 36 HOH HOH . G 6 HOH A 10 310 5 HOH HOH . G 6 HOH A 11 311 28 HOH HOH . G 6 HOH A 12 312 46 HOH HOH . G 6 HOH A 13 313 23 HOH HOH . G 6 HOH A 14 314 42 HOH HOH . G 6 HOH A 15 315 41 HOH HOH . G 6 HOH A 16 316 20 HOH HOH . G 6 HOH A 17 317 29 HOH HOH . G 6 HOH A 18 318 34 HOH HOH . G 6 HOH A 19 319 13 HOH HOH . G 6 HOH A 20 320 31 HOH HOH . G 6 HOH A 21 321 37 HOH HOH . G 6 HOH A 22 322 8 HOH HOH . G 6 HOH A 23 323 21 HOH HOH . G 6 HOH A 24 324 38 HOH HOH . G 6 HOH A 25 325 25 HOH HOH . G 6 HOH A 26 326 12 HOH HOH . G 6 HOH A 27 327 48 HOH HOH . G 6 HOH A 28 328 14 HOH HOH . H 6 HOH C 1 301 50 HOH HOH . H 6 HOH C 2 302 17 HOH HOH . H 6 HOH C 3 303 32 HOH HOH . H 6 HOH C 4 304 35 HOH HOH . H 6 HOH C 5 305 18 HOH HOH . H 6 HOH C 6 306 27 HOH HOH . H 6 HOH C 7 307 40 HOH HOH . H 6 HOH C 8 308 24 HOH HOH . H 6 HOH C 9 309 1 HOH HOH . H 6 HOH C 10 310 49 HOH HOH . H 6 HOH C 11 311 47 HOH HOH . H 6 HOH C 12 312 10 HOH HOH . I 6 HOH B 1 201 4 HOH HOH . I 6 HOH B 2 202 33 HOH HOH . I 6 HOH B 3 203 43 HOH HOH . I 6 HOH B 4 204 7 HOH HOH . I 6 HOH B 5 205 9 HOH HOH . I 6 HOH B 6 206 39 HOH HOH . I 6 HOH B 7 207 22 HOH HOH . I 6 HOH B 8 208 19 HOH HOH . I 6 HOH B 9 209 26 HOH HOH . I 6 HOH B 10 210 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 39.757 17.338 -8.909 1 53.71 ? C1 GOL 201 C 1 HETATM 2 O O1 GOL . . . F 5 40.565 17.672 -10.006 1 72.55 ? O1 GOL 201 C 1 HETATM 3 C C2 GOL . . . F 5 40.64 17.374 -7.678 1 71.45 ? C2 GOL 201 C 1 HETATM 4 O O2 GOL . . . F 5 39.816 17.461 -6.533 1 69.24 ? O2 GOL 201 C 1 HETATM 5 C C3 GOL . . . F 5 41.486 16.091 -7.601 1 73.31 ? C3 GOL 201 C 1 HETATM 6 O O3 GOL . . . F 5 40.732 15.101 -6.92 1 69.67 ? O3 GOL 201 C 1 HETATM 7 H H11 GOL . . . F 5 39.334 16.342 -9.041 1 64.45 ? H11 GOL 201 C 1 HETATM 8 H H12 GOL . . . F 5 38.941 18.054 -8.81 1 64.45 ? H12 GOL 201 C 1 HETATM 9 H HO1 GOL . . . F 5 40.043 17.595 -10.832 1 87.06 ? HO1 GOL 201 C 1 HETATM 10 H H2 GOL . . . F 5 41.302 18.238 -7.735 1 85.74 ? H2 GOL 201 C 1 HETATM 11 H HO2 GOL . . . F 5 39.233 16.674 -6.491 1 83.09 ? HO2 GOL 201 C 1 HETATM 12 H H31 GOL . . . F 5 42.414 16.287 -7.065 1 87.97 ? H31 GOL 201 C 1 HETATM 13 H H32 GOL . . . F 5 41.733 15.747 -8.605 1 87.97 ? H32 GOL 201 C 1 HETATM 14 H HO3 GOL . . . F 5 41.246 14.267 -6.885 1 83.61 ? HO3 GOL 201 C 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 429 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #