data_5L1F
#
_model_server_result.job_id            evoup6TsWSygqGlaA302qg 
_model_server_result.datetime_utc      '2024-11-29 07:31:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5l1f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":901}' 
#
_entry.id    5L1F 
#
_exptl.entry_id    5L1F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5L1F 
_cell.length_a            91.74 
_cell.length_b            109.345 
_cell.length_c            594.835 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5L1F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 54 A CYS 63 1_555 A SG CYS 306 A CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 A SG CYS 690 A CYS 718 1_555 A SG CYS 745 A CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 B SG CYS 54 B CYS 63 1_555 B SG CYS 306 B CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 B SG CYS 690 B CYS 718 1_555 B SG CYS 745 B CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 C SG CYS 54 C CYS 63 1_555 C SG CYS 306 C CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 C SG CYS 690 C CYS 718 1_555 C SG CYS 745 C CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 D SG CYS 54 D CYS 63 1_555 D SG CYS 306 D CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A NZ LYS 337 A LYS 346 1_555 E O7 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? 
covale ? covale2 A ND2 ASN 346 A ASN 355 1_555 E C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? 
covale ? covale3 B ND2 ASN 346 B ASN 355 1_555 G C1 NAG . B NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? 
covale ? covale4 C NZ LYS 337 C LYS 346 1_555 I O7 NAG . C NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? 
covale ? covale5 C ND2 ASN 346 C ASN 355 1_555 I C1 NAG . C NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? 
covale ? covale6 D ND2 ASN 346 D ASN 355 1_555 K C1 NAG . D NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 280 n n 
C1 O1 NAG sing 281 n n 
C1 O5 NAG sing 282 n n 
C1 H1 NAG sing 283 n n 
C2 C3 NAG sing 284 n n 
C2 N2 NAG sing 285 n n 
C2 H2 NAG sing 286 n n 
C3 C4 NAG sing 287 n n 
C3 O3 NAG sing 288 n n 
C3 H3 NAG sing 289 n n 
C4 C5 NAG sing 290 n n 
C4 O4 NAG sing 291 n n 
C4 H4 NAG sing 292 n n 
C5 C6 NAG sing 293 n n 
C5 O5 NAG sing 294 n n 
C5 H5 NAG sing 295 n n 
C6 O6 NAG sing 296 n n 
C6 H61 NAG sing 297 n n 
C6 H62 NAG sing 298 n n 
C7 C8 NAG sing 299 n n 
C7 N2 NAG sing 300 n n 
C7 O7 NAG doub 301 n n 
C8 H81 NAG sing 302 n n 
C8 H82 NAG sing 303 n n 
C8 H83 NAG sing 304 n n 
N2 HN2 NAG sing 305 n n 
O1 HO1 NAG sing 306 n n 
O3 HO3 NAG sing 307 n n 
O4 HO4 NAG sing 308 n n 
O6 HO6 NAG sing 309 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5L1F 
_atom_sites.fract_transf_matrix[1][1]    0.0109 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009145 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.001681 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAG A 1 901 834 NAG NAG . 
F 3 6ZP A 1 902 903 6ZP PMP . 
G 2 NAG B 1 901 834 NAG NAG . 
H 3 6ZP B 1 902 903 6ZP PMP . 
I 2 NAG C 1 901 834 NAG NAG . 
J 3 6ZP C 1 902 903 6ZP PMP . 
K 2 NAG D 1 901 834 NAG NAG . 
L 3 6ZP D 1 902 903 6ZP PMP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . I 2 19.639 -30.112 -127.33 1 248.16 ? C1 NAG 901 C 1 
HETATM 2 C C2 NAG . . . I 2 20.37 -30.58 -128.597 1 268.44 ? C2 NAG 901 C 1 
HETATM 3 C C3 NAG . . . I 2 19.654 -31.771 -129.239 1 262.99 ? C3 NAG 901 C 1 
HETATM 4 C C4 NAG . . . I 2 19.434 -32.871 -128.208 1 239.1 ? C4 NAG 901 C 1 
HETATM 5 C C5 NAG . . . I 2 18.734 -32.311 -126.97 1 223.89 ? C5 NAG 901 C 1 
HETATM 6 C C6 NAG . . . I 2 18.593 -33.328 -125.861 1 208.05 ? C6 NAG 901 C 1 
HETATM 7 C C7 NAG . . . I 2 19.763 -28.738 -130.24 1 294.07 ? C7 NAG 901 C 1 
HETATM 8 C C8 NAG . . . I 2 18.291 -28.967 -130.01 1 297.34 ? C8 NAG 901 C 1 
HETATM 9 N N2 NAG . . . I 2 20.637 -29.511 -129.561 1 293.12 ? N2 NAG 901 C 1 
HETATM 10 O O3 NAG . . . I 2 20.433 -32.267 -130.321 1 304.57 ? O3 NAG 901 C 1 
HETATM 11 O O4 NAG . . . I 2 18.639 -33.909 -128.77 1 232.8 ? O4 NAG 901 C 1 
HETATM 12 O O5 NAG . . . I 2 19.486 -31.213 -126.429 1 225.24 ? O5 NAG 901 C 1 
HETATM 13 O O6 NAG . . . I 2 19.827 -33.538 -125.186 1 158.61 ? O6 NAG 901 C 1 
HETATM 14 O O7 NAG . . . I 2 20.157 -27.876 -131.021 1 271.64 ? O7 NAG 901 C 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           361 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#