data_5L1G
#
_model_server_result.job_id            WJikDNHJZWLKcCBcoVItbQ 
_model_server_result.datetime_utc      '2024-11-08 19:13:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5l1g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":902}' 
#
_entry.id    5L1G 
#
_exptl.entry_id    5L1G 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              431.283 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            (8R)-5-(4-amino-3-bromophenyl)-N,8-dimethyl-8,9-dihydro-2H,7H-[1,3]dioxolo[4,5-h][2,3]benzodiazepine-7-carboxamide 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5L1G 
_cell.length_a            92.79 
_cell.length_b            110.4 
_cell.length_c            600.14 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5L1G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 I N N 
? 3 K N N 
? 3 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 54 A CYS 63 1_555 A SG CYS 306 A CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 A SG CYS 690 A CYS 718 1_555 A SG CYS 745 A CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf3 B SG CYS 54 B CYS 63 1_555 B SG CYS 306 B CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 B SG CYS 690 B CYS 718 1_555 B SG CYS 745 B CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf5 C SG CYS 54 C CYS 63 1_555 C SG CYS 306 C CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf6 C SG CYS 690 C CYS 718 1_555 C SG CYS 745 C CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf7 D SG CYS 54 D CYS 63 1_555 D SG CYS 306 D CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A NZ LYS 337 A LYS 346 1_555 E O7 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? 
covale ? covale2 A ND2 ASN 346 A ASN 355 1_555 E C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale3 B ND2 ASN 346 B ASN 355 1_555 H C1 NAG . B NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale4 C ND2 ASN 346 C ASN 355 1_555 J C1 NAG . C NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale5 D ND2 ASN 346 D ASN 355 1_555 L C1 NAG . D NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
#
_chem_comp.formula           'C19 H19 Br N4 O3' 
_chem_comp.formula_weight    431.283 
_chem_comp.id                GYB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (8R)-5-(4-amino-3-bromophenyl)-N,8-dimethyl-8,9-dihydro-2H,7H-[1,3]dioxolo[4,5-h][2,3]benzodiazepine-7-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
NBA CAX GYB sing 129 n n 
BR1 CAY GYB sing 130 n n 
CAX CAY GYB doub 131 n y 
CAX CAW GYB sing 132 n y 
CAY CAV GYB sing 133 n y 
CAW CAT GYB doub 134 n y 
CAV CAU GYB doub 135 n y 
CAT CAU GYB sing 136 n y 
CAU CAM GYB sing 137 n n 
NAI CAH GYB sing 138 n n 
NAI CAJ GYB sing 139 n n 
CAM NAL GYB doub 140 n n 
CAM CAN GYB sing 141 n n 
NAL NAK GYB sing 142 n n 
CAO CAN GYB doub 143 n y 
CAO CAP GYB sing 144 n y 
CAN CAD GYB sing 145 n y 
CAJ NAK GYB sing 146 n n 
CAJ OAS GYB doub 147 n n 
NAK CAB GYB sing 148 n n 
OAQ CAP GYB sing 149 n n 
OAQ CAR GYB sing 150 n n 
CAP CAF GYB doub 151 n y 
CAD CAC GYB sing 152 n n 
CAD CAE GYB doub 153 n y 
CAB CAC GYB sing 154 n n 
CAB CAA GYB sing 155 n n 
CAR OAG GYB sing 156 n n 
CAF CAE GYB sing 157 n y 
CAF OAG GYB sing 158 n n 
CAH H1 GYB sing 159 n n 
CAH H2 GYB sing 160 n n 
CAH H3 GYB sing 161 n n 
NAI H4 GYB sing 162 n n 
CAB H6 GYB sing 163 n n 
CAA H7 GYB sing 164 n n 
CAA H8 GYB sing 165 n n 
CAA H9 GYB sing 166 n n 
CAC H10 GYB sing 167 n n 
CAC H11 GYB sing 168 n n 
CAE H12 GYB sing 169 n n 
CAR H13 GYB sing 170 n n 
CAO H14 GYB sing 171 n n 
CAV H16 GYB sing 172 n n 
NBA H17 GYB sing 173 n n 
NBA H18 GYB sing 174 n n 
CAW H19 GYB sing 175 n n 
CAT H20 GYB sing 176 n n 
CAR H5 GYB sing 177 n n 
#
_atom_sites.entry_id                     5L1G 
_atom_sites.fract_transf_matrix[1][1]    0.010777 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009058 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.001666 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAG A 1 901 901 NAG NAG . 
F 3 GYB A 1 902 902 GYB GYB . 
G 3 GYB A 1 903 903 GYB GYB . 
H 2 NAG B 1 901 901 NAG NAG . 
I 3 GYB B 1 902 902 GYB GYB . 
J 2 NAG C 1 901 901 NAG NAG . 
K 3 GYB C 1 902 902 GYB GYB . 
L 2 NAG D 1 901 901 NAG NAG . 
M 3 GYB D 1 902 902 GYB GYB . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAH GYB . . . I 3 42.329 95.925 50.835 1 265.17 ? CAH GYB 902 B 1 
HETATM 2 N NAI GYB . . . I 3 41.388 95.322 49.888 1 263.78 ? NAI GYB 902 B 1 
HETATM 3 C CAJ GYB . . . I 3 40.083 94.83 50.395 1 265.98 ? CAJ GYB 902 B 1 
HETATM 4 O OAS GYB . . . I 3 39.831 94.928 51.507 1 269.64 ? OAS GYB 902 B 1 
HETATM 5 N NAK GYB . . . I 3 39.094 94.214 49.492 1 263.94 ? NAK GYB 902 B 1 
HETATM 6 N NAL GYB . . . I 3 39.466 94.121 48.134 1 261.97 ? NAL GYB 902 B 1 
HETATM 7 C CAB GYB . . . I 3 37.873 93.787 50.139 1 263.65 ? CAB GYB 902 B 1 
HETATM 8 C CAA GYB . . . I 3 37.667 92.255 49.885 1 266.19 ? CAA GYB 902 B 1 
HETATM 9 C CAC GYB . . . I 3 36.648 94.55 49.634 1 259.86 ? CAC GYB 902 B 1 
HETATM 10 C CAD GYB . . . I 3 36.293 94.217 48.168 1 260.63 ? CAD GYB 902 B 1 
HETATM 11 C CAE GYB . . . I 3 34.939 93.712 47.93 1 262.71 ? CAE GYB 902 B 1 
HETATM 12 C CAF GYB . . . I 3 34.509 93.371 46.591 1 265.37 ? CAF GYB 902 B 1 
HETATM 13 O OAG GYB . . . I 3 33.339 92.88 46.023 1 268.12 ? OAG GYB 902 B 1 
HETATM 14 C CAR GYB . . . I 3 33.502 92.754 44.711 1 269.42 ? CAR GYB 902 B 1 
HETATM 15 O OAQ GYB . . . I 3 34.725 93.136 44.36 1 269.64 ? OAQ GYB 902 B 1 
HETATM 16 C CAP GYB . . . I 3 35.402 93.533 45.508 1 266.39 ? CAP GYB 902 B 1 
HETATM 17 C CAO GYB . . . I 3 36.736 94.044 45.747 1 262.56 ? CAO GYB 902 B 1 
HETATM 18 C CAN GYB . . . I 3 37.186 94.381 47.089 1 260.24 ? CAN GYB 902 B 1 
HETATM 19 C CAM GYB . . . I 3 38.657 94.91 47.218 1 259.24 ? CAM GYB 902 B 1 
HETATM 20 C CAU GYB . . . I 3 39.436 94.923 45.884 1 259.28 ? CAU GYB 902 B 1 
HETATM 21 C CAV GYB . . . I 3 39.952 96.125 45.398 1 256.07 ? CAV GYB 902 B 1 
HETATM 22 C CAY GYB . . . I 3 40.678 96.163 44.184 1 255.63 ? CAY GYB 902 B 1 
HETATM 23 BR BR1 GYB . . . I 3 41.391 97.822 43.484 1 275.53 ? BR1 GYB 902 B 1 
HETATM 24 C CAX GYB . . . I 3 40.885 94.963 43.469 1 256.91 ? CAX GYB 902 B 1 
HETATM 25 N NBA GYB . . . I 3 41.645 94.97 42.19 1 253.85 ? NBA GYB 902 B 1 
HETATM 26 C CAW GYB . . . I 3 40.386 93.776 43.952 1 263.79 ? CAW GYB 902 B 1 
HETATM 27 C CAT GYB . . . I 3 39.68 93.743 45.172 1 264.62 ? CAT GYB 902 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           226 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#