data_5L1G # _model_server_result.job_id VpLdZf6OlukpKwook8Ak3g _model_server_result.datetime_utc '2024-11-08 19:07:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l1g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":903}' # _entry.id 5L1G # _exptl.entry_id 5L1G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 431.283 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description (8R)-5-(4-amino-3-bromophenyl)-N,8-dimethyl-8,9-dihydro-2H,7H-[1,3]dioxolo[4,5-h][2,3]benzodiazepine-7-carboxamide _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5L1G _cell.length_a 92.79 _cell.length_b 110.4 _cell.length_c 600.14 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L1G _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 I N N ? 3 K N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 A CYS 63 1_555 A SG CYS 306 A CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 690 A CYS 718 1_555 A SG CYS 745 A CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 B SG CYS 54 B CYS 63 1_555 B SG CYS 306 B CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 B SG CYS 690 B CYS 718 1_555 B SG CYS 745 B CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf5 C SG CYS 54 C CYS 63 1_555 C SG CYS 306 C CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 C SG CYS 690 C CYS 718 1_555 C SG CYS 745 C CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf7 D SG CYS 54 D CYS 63 1_555 D SG CYS 306 D CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A NZ LYS 337 A LYS 346 1_555 E O7 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? covale ? covale2 A ND2 ASN 346 A ASN 355 1_555 E C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 B ND2 ASN 346 B ASN 355 1_555 H C1 NAG . B NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 C ND2 ASN 346 C ASN 355 1_555 J C1 NAG . C NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale5 D ND2 ASN 346 D ASN 355 1_555 L C1 NAG . D NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C19 H19 Br N4 O3' _chem_comp.formula_weight 431.283 _chem_comp.id GYB _chem_comp.mon_nstd_flag . _chem_comp.name (8R)-5-(4-amino-3-bromophenyl)-N,8-dimethyl-8,9-dihydro-2H,7H-[1,3]dioxolo[4,5-h][2,3]benzodiazepine-7-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NBA CAX GYB sing 129 n n BR1 CAY GYB sing 130 n n CAX CAY GYB doub 131 n y CAX CAW GYB sing 132 n y CAY CAV GYB sing 133 n y CAW CAT GYB doub 134 n y CAV CAU GYB doub 135 n y CAT CAU GYB sing 136 n y CAU CAM GYB sing 137 n n NAI CAH GYB sing 138 n n NAI CAJ GYB sing 139 n n CAM NAL GYB doub 140 n n CAM CAN GYB sing 141 n n NAL NAK GYB sing 142 n n CAO CAN GYB doub 143 n y CAO CAP GYB sing 144 n y CAN CAD GYB sing 145 n y CAJ NAK GYB sing 146 n n CAJ OAS GYB doub 147 n n NAK CAB GYB sing 148 n n OAQ CAP GYB sing 149 n n OAQ CAR GYB sing 150 n n CAP CAF GYB doub 151 n y CAD CAC GYB sing 152 n n CAD CAE GYB doub 153 n y CAB CAC GYB sing 154 n n CAB CAA GYB sing 155 n n CAR OAG GYB sing 156 n n CAF CAE GYB sing 157 n y CAF OAG GYB sing 158 n n CAH H1 GYB sing 159 n n CAH H2 GYB sing 160 n n CAH H3 GYB sing 161 n n NAI H4 GYB sing 162 n n CAB H6 GYB sing 163 n n CAA H7 GYB sing 164 n n CAA H8 GYB sing 165 n n CAA H9 GYB sing 166 n n CAC H10 GYB sing 167 n n CAC H11 GYB sing 168 n n CAE H12 GYB sing 169 n n CAR H13 GYB sing 170 n n CAO H14 GYB sing 171 n n CAV H16 GYB sing 172 n n NBA H17 GYB sing 173 n n NBA H18 GYB sing 174 n n CAW H19 GYB sing 175 n n CAT H20 GYB sing 176 n n CAR H5 GYB sing 177 n n # _atom_sites.entry_id 5L1G _atom_sites.fract_transf_matrix[1][1] 0.010777 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009058 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001666 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAG A 1 901 901 NAG NAG . F 3 GYB A 1 902 902 GYB GYB . G 3 GYB A 1 903 903 GYB GYB . H 2 NAG B 1 901 901 NAG NAG . I 3 GYB B 1 902 902 GYB GYB . J 2 NAG C 1 901 901 NAG NAG . K 3 GYB C 1 902 902 GYB GYB . L 2 NAG D 1 901 901 NAG NAG . M 3 GYB D 1 902 902 GYB GYB . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAH GYB . . . G 3 46.873 100.25 30.479 0.25 201.4 ? CAH GYB 903 A 1 HETATM 2 N NAI GYB . . . G 3 45.692 100.8 29.79 0.25 207.71 ? NAI GYB 903 A 1 HETATM 3 C CAJ GYB . . . G 3 45.823 101.195 28.508 0.25 210.91 ? CAJ GYB 903 A 1 HETATM 4 O OAS GYB . . . G 3 46.901 101.111 27.917 0.25 218.38 ? OAS GYB 903 A 1 HETATM 5 N NAK GYB . . . G 3 44.718 101.63 27.871 0.25 205.97 ? NAK GYB 903 A 1 HETATM 6 N NAL GYB . . . G 3 43.631 101.766 28.532 0.25 197.07 ? NAL GYB 903 A 1 HETATM 7 C CAB GYB . . . G 3 44.868 102.245 26.538 0.25 205.88 ? CAB GYB 903 A 1 HETATM 8 C CAA GYB . . . G 3 46.161 103.284 26.489 0.25 197.92 ? CAA GYB 903 A 1 HETATM 9 C CAC GYB . . . G 3 44.02 101.747 25.381 0.25 210.42 ? CAC GYB 903 A 1 HETATM 10 C CAD GYB . . . G 3 42.788 102.45 25.647 0.25 214.43 ? CAD GYB 903 A 1 HETATM 11 C CAE GYB . . . G 3 42.272 103.025 24.496 0.25 232.04 ? CAE GYB 903 A 1 HETATM 12 C CAF GYB . . . G 3 41.142 103.737 24.519 0.25 243.71 ? CAF GYB 903 A 1 HETATM 13 O OAG GYB . . . G 3 40.513 104.344 23.479 0.25 248.86 ? OAG GYB 903 A 1 HETATM 14 C CAR GYB . . . G 3 39.208 104.672 24.002 0.25 249.92 ? CAR GYB 903 A 1 HETATM 15 O OAQ GYB . . . G 3 39.359 104.681 25.439 0.25 257.15 ? OAQ GYB 903 A 1 HETATM 16 C CAP GYB . . . G 3 40.471 103.933 25.657 0.25 244.29 ? CAP GYB 903 A 1 HETATM 17 C CAO GYB . . . G 3 40.91 103.422 26.808 0.25 225.9 ? CAO GYB 903 A 1 HETATM 18 C CAN GYB . . . G 3 42.082 102.686 26.853 0.25 207.4 ? CAN GYB 903 A 1 HETATM 19 C CAM GYB . . . G 3 42.41 102.198 28.132 0.25 198.68 ? CAM GYB 903 A 1 HETATM 20 C CAU GYB . . . G 3 41.442 102.244 29.143 0.25 198.75 ? CAU GYB 903 A 1 HETATM 21 C CAV GYB . . . G 3 40.39 101.357 29.371 0.25 210.07 ? CAV GYB 903 A 1 HETATM 22 C CAY GYB . . . G 3 39.521 101.585 30.455 0.25 202.4 ? CAY GYB 903 A 1 HETATM 23 BR BR1 GYB . . . G 3 38.103 100.4 30.771 0.25 58.02 ? BR1 GYB 903 A 1 HETATM 24 C CAX GYB . . . G 3 39.703 102.688 31.3 0.25 184.22 ? CAX GYB 903 A 1 HETATM 25 N NBA GYB . . . G 3 38.852 102.875 32.328 0.25 166.2 ? NBA GYB 903 A 1 HETATM 26 C CAW GYB . . . G 3 40.747 103.567 31.072 0.25 184.2 ? CAW GYB 903 A 1 HETATM 27 C CAT GYB . . . G 3 41.596 103.331 30.001 0.25 191.36 ? CAT GYB 903 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 27 #