data_5L1H
#
_model_server_result.job_id            DcInxi37oqTbhoJkAvhJyg 
_model_server_result.datetime_utc      '2024-12-01 12:00:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5l1h 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":902}' 
#
_entry.id    5L1H 
#
_exptl.entry_id    5L1H 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              352.387 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (8R)-5-(4-aminophenyl)-N,8-dimethyl-8,9-dihydro-2H,7H-[1,3]dioxolo[4,5-h][2,3]benzodiazepine-7-carboxamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5L1H 
_cell.length_a            92.591 
_cell.length_b            110.636 
_cell.length_c            599.892 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5L1H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 54 A CYS 63 1_555 A SG CYS 306 A CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 A SG CYS 690 A CYS 718 1_555 A SG CYS 745 A CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf3 B SG CYS 54 B CYS 63 1_555 B SG CYS 306 B CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 B SG CYS 690 B CYS 718 1_555 B SG CYS 745 B CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 C SG CYS 54 C CYS 63 1_555 C SG CYS 306 C CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf6 C SG CYS 690 C CYS 718 1_555 C SG CYS 745 C CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 D SG CYS 54 D CYS 63 1_555 D SG CYS 306 D CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A NZ LYS 337 A LYS 346 1_555 E O7 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? 
covale ? covale2 A ND2 ASN 346 A ASN 355 1_555 E C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale3 A N ALA 513 A ALA 522 1_555 B CD1 LEU 759 B LEU 787 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.545 ? 
covale ? covale4 B ND2 ASN 346 B ASN 355 1_555 G C1 NAG . B NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale5 C ND2 ASN 346 C ASN 355 1_555 I C1 NAG . C NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale6 D ND2 ASN 346 D ASN 355 1_555 K C1 NAG . D NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
#
_chem_comp.formula           'C19 H20 N4 O3' 
_chem_comp.formula_weight    352.387 
_chem_comp.id                GYK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (8R)-5-(4-aminophenyl)-N,8-dimethyl-8,9-dihydro-2H,7H-[1,3]dioxolo[4,5-h][2,3]benzodiazepine-7-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N23 C20 GYK sing 129 n n 
C20 C21 GYK doub 130 n y 
C20 C19 GYK sing 131 n y 
C21 C22 GYK sing 132 n y 
C19 C18 GYK doub 133 n y 
O24 C25 GYK sing 134 n n 
O24 C07 GYK sing 135 n n 
C25 O26 GYK sing 136 n n 
C22 C17 GYK doub 137 n y 
C18 C17 GYK sing 138 n y 
C07 C08 GYK doub 139 n y 
C07 C06 GYK sing 140 n y 
C08 C09 GYK sing 141 n y 
C17 C10 GYK sing 142 n n 
O26 C06 GYK sing 143 n n 
C06 C05 GYK doub 144 n y 
C09 C10 GYK sing 145 n n 
C09 C04 GYK doub 146 n y 
C10 N11 GYK doub 147 n n 
C05 C04 GYK sing 148 n y 
C04 C03 GYK sing 149 n n 
N11 N12 GYK sing 150 n n 
C03 C02 GYK sing 151 n n 
N12 C02 GYK sing 152 n n 
N12 C13 GYK sing 153 n n 
N15 C13 GYK sing 154 n n 
N15 C16 GYK sing 155 n n 
C01 C02 GYK sing 156 n n 
C13 O14 GYK doub 157 n n 
C01 H1 GYK sing 158 n n 
C01 H2 GYK sing 159 n n 
C01 H3 GYK sing 160 n n 
C02 H4 GYK sing 161 n n 
C03 H5 GYK sing 162 n n 
C03 H6 GYK sing 163 n n 
C05 H7 GYK sing 164 n n 
C08 H8 GYK sing 165 n n 
N15 H11 GYK sing 166 n n 
C16 H12 GYK sing 167 n n 
C16 H13 GYK sing 168 n n 
C16 H14 GYK sing 169 n n 
C18 H15 GYK sing 170 n n 
C19 H16 GYK sing 171 n n 
C21 H17 GYK sing 172 n n 
C22 H18 GYK sing 173 n n 
N23 H19 GYK sing 174 n n 
N23 H20 GYK sing 175 n n 
C25 H21 GYK sing 176 n n 
C25 H9 GYK sing 177 n n 
#
_atom_sites.entry_id                     5L1H 
_atom_sites.fract_transf_matrix[1][1]    0.0108 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009039 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.001667 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAG A 1 901 834 NAG NAG . 
F 3 GYK A 1 902 900 GYK GYK . 
G 2 NAG B 1 901 834 NAG NAG . 
H 3 GYK B 1 902 900 GYK GYK . 
I 2 NAG C 1 901 834 NAG NAG . 
J 3 GYK C 1 902 900 GYK GYK . 
K 2 NAG D 1 901 834 NAG NAG . 
L 3 GYK D 1 902 900 GYK GYK . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 GYK . . . J 3 -19.43 13.667 36.409 1 159.9 ? C01 GYK 902 C 1 
HETATM 2 C C02 GYK . . . J 3 -20.491 14.234 37.365 1 167.86 ? C02 GYK 902 C 1 
HETATM 3 C C03 GYK . . . J 3 -21.38 13.086 37.841 1 172.4 ? C03 GYK 902 C 1 
HETATM 4 C C04 GYK . . . J 3 -21.905 12.284 36.648 1 176.41 ? C04 GYK 902 C 1 
HETATM 5 C C05 GYK . . . J 3 -21.454 10.936 36.516 1 194.02 ? C05 GYK 902 C 1 
HETATM 6 C C06 GYK . . . J 3 -21.918 10.167 35.421 1 205.69 ? C06 GYK 902 C 1 
HETATM 7 C C07 GYK . . . J 3 -22.804 10.727 34.481 1 206.27 ? C07 GYK 902 C 1 
HETATM 8 C C08 GYK . . . J 3 -23.243 12.068 34.625 1 187.88 ? C08 GYK 902 C 1 
HETATM 9 C C09 GYK . . . J 3 -22.784 12.843 35.72 1 169.38 ? C09 GYK 902 C 1 
HETATM 10 C C10 GYK . . . J 3 -23.278 14.317 35.822 1 160.66 ? C10 GYK 902 C 1 
HETATM 11 N N11 GYK . . . J 3 -22.14 15.194 35.593 1 159.05 ? N11 GYK 902 C 1 
HETATM 12 N N12 GYK . . . J 3 -21.232 15.279 36.672 1 167.95 ? N12 GYK 902 C 1 
HETATM 13 C C13 GYK . . . J 3 -20.978 16.62 37.178 1 172.89 ? C13 GYK 902 C 1 
HETATM 14 O O14 GYK . . . J 3 -20.23 16.781 38.082 1 180.36 ? O14 GYK 902 C 1 
HETATM 15 N N15 GYK . . . J 3 -21.644 17.756 36.577 1 169.69 ? N15 GYK 902 C 1 
HETATM 16 C C16 GYK . . . J 3 -21.373 19.078 37.108 1 163.38 ? C16 GYK 902 C 1 
HETATM 17 C C17 GYK . . . J 3 -24.366 14.614 34.802 1 160.73 ? C17 GYK 902 C 1 
HETATM 18 C C18 GYK . . . J 3 -25.653 14.904 35.24 1 172.05 ? C18 GYK 902 C 1 
HETATM 19 C C19 GYK . . . J 3 -26.657 15.18 34.327 1 164.38 ? C19 GYK 902 C 1 
HETATM 20 C C20 GYK . . . J 3 -26.389 15.176 32.966 1 146.2 ? C20 GYK 902 C 1 
HETATM 21 C C21 GYK . . . J 3 -25.108 14.899 32.519 1 146.18 ? C21 GYK 902 C 1 
HETATM 22 C C22 GYK . . . J 3 -24.104 14.627 33.434 1 153.34 ? C22 GYK 902 C 1 
HETATM 23 N N23 GYK . . . J 3 -27.441 15.462 32.008 1 128.18 ? N23 GYK 902 C 1 
HETATM 24 O O24 GYK . . . J 3 -23.054 9.728 33.557 1 219.13 ? O24 GYK 902 C 1 
HETATM 25 C C25 GYK . . . J 3 -22.393 8.636 33.904 1 211.9 ? C25 GYK 902 C 1 
HETATM 26 O O26 GYK . . . J 3 -21.698 8.863 35.004 1 210.84 ? O26 GYK 902 C 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           26 
#