data_5L1N # _model_server_result.job_id 9j9poohfwLUhzUtE44yU0w _model_server_result.datetime_utc '2024-10-19 13:22:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l1n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":902}' # _entry.id 5L1N # _exptl.entry_id 5L1N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5L1N _cell.length_a 191.965 _cell.length_b 191.965 _cell.length_c 74.866 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L1N _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id ND2 _struct_conn.ptnr1_label_comp_id ASN _struct_conn.ptnr1_label_seq_id 386 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id ASN _struct_conn.ptnr1_auth_seq_id 386 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CE1 _struct_conn.ptnr2_label_comp_id PHE _struct_conn.ptnr2_label_seq_id 445 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id PHE _struct_conn.ptnr2_auth_seq_id 445 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.467 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 5L1N _atom_sites.fract_transf_matrix[1][1] 0.005209 _atom_sites.fract_transf_matrix[1][2] 0.003008 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006015 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013357 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 901 901 FAD FAD . D 3 COA A 1 902 902 COA COA . E 2 FAD B 1 901 901 FAD FAD . F 3 COA B 1 902 902 COA COA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . D 3 31.507 13.011 19.145 1 189.62 ? N1A COA 902 A 1 HETATM 2 C C2A COA . . . D 3 30.314 13.088 19.782 1 182.81 ? C2A COA 902 A 1 HETATM 3 N N3A COA . . . D 3 29.787 12.065 20.493 1 184.23 ? N3A COA 902 A 1 HETATM 4 C C4A COA . . . D 3 30.433 10.869 20.613 1 192.12 ? C4A COA 902 A 1 HETATM 5 C C5A COA . . . D 3 31.739 10.716 19.942 1 195.66 ? C5A COA 902 A 1 HETATM 6 C C6A COA . . . D 3 32.263 11.878 19.178 1 197.69 ? C6A COA 902 A 1 HETATM 7 N N6A COA . . . D 3 33.461 11.787 18.545 1 203.87 ? N6A COA 902 A 1 HETATM 8 N N7A COA . . . D 3 32.171 9.469 20.204 1 198.07 ? N7A COA 902 A 1 HETATM 9 C C8A COA . . . D 3 31.235 8.87 20.978 1 198.42 ? C8A COA 902 A 1 HETATM 10 N N9A COA . . . D 3 30.199 9.695 21.222 1 199.85 ? N9A COA 902 A 1 HETATM 11 C C1B COA . . . D 3 29.013 9.311 22.036 1 212.95 ? C1B COA 902 A 1 HETATM 12 C C2B COA . . . D 3 28.308 8.11 21.413 1 221.05 ? C2B COA 902 A 1 HETATM 13 O O2B COA . . . D 3 27.214 8.528 20.593 1 241.11 ? O2B COA 902 A 1 HETATM 14 C C3B COA . . . D 3 27.872 7.256 22.587 1 220.89 ? C3B COA 902 A 1 HETATM 15 O O3B COA . . . D 3 26.518 7.581 22.906 1 225.39 ? O3B COA 902 A 1 HETATM 16 P P3B COA . . . D 3 25.612 6.806 23.985 1 228.36 ? P3B COA 902 A 1 HETATM 17 O O7A COA . . . D 3 24.181 6.941 23.507 1 227.24 ? O7A COA 902 A 1 HETATM 18 O O8A COA . . . D 3 26.102 5.385 24.053 1 231.58 -1 O8A COA 902 A 1 HETATM 19 O O9A COA . . . D 3 25.974 7.614 25.198 1 235.69 ? O9A COA 902 A 1 HETATM 20 C C4B COA . . . D 3 28.914 7.583 23.658 1 216.65 ? C4B COA 902 A 1 HETATM 21 O O4B COA . . . D 3 29.385 8.906 23.362 1 214.53 ? O4B COA 902 A 1 HETATM 22 C C5B COA . . . D 3 30.112 6.618 23.68 1 220.22 ? C5B COA 902 A 1 HETATM 23 O O5B COA . . . D 3 30.152 5.769 22.52 1 230.55 ? O5B COA 902 A 1 HETATM 24 P P1A COA . . . D 3 31.422 4.889 22.035 1 240.83 ? P1A COA 902 A 1 HETATM 25 O O1A COA . . . D 3 31.958 5.471 20.741 1 237.46 -1 O1A COA 902 A 1 HETATM 26 O O2A COA . . . D 3 32.363 4.671 23.199 1 245.13 ? O2A COA 902 A 1 HETATM 27 O O3A COA . . . D 3 30.736 3.474 21.652 1 241.94 ? O3A COA 902 A 1 HETATM 28 P P2A COA . . . D 3 30.139 2.442 22.744 1 238.35 ? P2A COA 902 A 1 HETATM 29 O O4A COA . . . D 3 29.126 1.543 22.061 1 230.6 -1 O4A COA 902 A 1 HETATM 30 O O5A COA . . . D 3 29.758 3.212 23.987 1 249.56 ? O5A COA 902 A 1 HETATM 31 O O6A COA . . . D 3 31.425 1.551 23.082 1 233.96 ? O6A COA 902 A 1 HETATM 32 C CBP COA . . . D 3 33.341 0.383 22.135 1 235.22 ? CBP COA 902 A 1 HETATM 33 C CCP COA . . . D 3 31.829 0.562 22.147 1 232.57 ? CCP COA 902 A 1 HETATM 34 C CDP COA . . . D 3 34.063 1.703 21.868 1 237.17 ? CDP COA 902 A 1 HETATM 35 C CEP COA . . . D 3 33.78 -0.111 23.51 1 241.93 ? CEP COA 902 A 1 HETATM 36 C CAP COA . . . D 3 33.577 -0.658 21.024 1 227.71 ? CAP COA 902 A 1 HETATM 37 O OAP COA . . . D 3 33.339 -0.069 19.738 1 227.94 ? OAP COA 902 A 1 HETATM 38 C C9P COA . . . D 3 34.956 -1.231 21.003 1 220.37 ? C9P COA 902 A 1 HETATM 39 O O9P COA . . . D 3 35.18 -2.274 21.599 1 224.4 ? O9P COA 902 A 1 HETATM 40 N N8P COA . . . D 3 35.863 -0.556 20.3 1 209.91 ? N8P COA 902 A 1 HETATM 41 C C7P COA . . . D 3 37.223 -1.023 20.195 1 211.24 ? C7P COA 902 A 1 HETATM 42 C C6P COA . . . D 3 37.333 -2.192 19.22 1 211.01 ? C6P COA 902 A 1 HETATM 43 C C5P COA . . . D 3 37.68 -1.645 17.839 1 212.65 ? C5P COA 902 A 1 HETATM 44 O O5P COA . . . D 3 37.535 -0.37 17.591 1 205.86 ? O5P COA 902 A 1 HETATM 45 N N4P COA . . . D 3 37.947 -2.502 16.843 1 220 ? N4P COA 902 A 1 HETATM 46 C C3P COA . . . D 3 37.394 -3.852 16.885 1 215.61 ? C3P COA 902 A 1 HETATM 47 C C2P COA . . . D 3 37.887 -4.743 15.756 1 211.8 ? C2P COA 902 A 1 HETATM 48 S S1P COA . . . D 3 38.907 -3.815 14.589 1 208.4 ? S1P COA 902 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #