data_5L1N # _model_server_result.job_id VhFiiJks-uIEHsJBxII5tA _model_server_result.datetime_utc '2024-10-19 13:24:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l1n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":902}' # _entry.id 5L1N # _exptl.entry_id 5L1N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5L1N _cell.length_a 191.965 _cell.length_b 191.965 _cell.length_c 74.866 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L1N _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id ND2 _struct_conn.ptnr1_label_comp_id ASN _struct_conn.ptnr1_label_seq_id 386 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id ASN _struct_conn.ptnr1_auth_seq_id 386 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CE1 _struct_conn.ptnr2_label_comp_id PHE _struct_conn.ptnr2_label_seq_id 445 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id PHE _struct_conn.ptnr2_auth_seq_id 445 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.467 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 5L1N _atom_sites.fract_transf_matrix[1][1] 0.005209 _atom_sites.fract_transf_matrix[1][2] 0.003008 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006015 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013357 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 901 901 FAD FAD . D 3 COA A 1 902 902 COA COA . E 2 FAD B 1 901 901 FAD FAD . F 3 COA B 1 902 902 COA COA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . F 3 33.819 5.684 -18.853 1 194.58 ? N1A COA 902 B 1 HETATM 2 C C2A COA . . . F 3 32.805 6.563 -19.054 1 192.35 ? C2A COA 902 B 1 HETATM 3 N N3A COA . . . F 3 31.819 6.371 -19.966 1 189.71 ? N3A COA 902 B 1 HETATM 4 C C4A COA . . . F 3 31.8 5.262 -20.77 1 197.69 ? C4A COA 902 B 1 HETATM 5 C C5A COA . . . F 3 32.893 4.268 -20.602 1 197.26 ? C5A COA 902 B 1 HETATM 6 C C6A COA . . . F 3 33.936 4.537 -19.574 1 195.88 ? C6A COA 902 B 1 HETATM 7 N N6A COA . . . F 3 34.962 3.667 -19.375 1 195.21 ? N6A COA 902 B 1 HETATM 8 N N7A COA . . . F 3 32.667 3.28 -21.486 1 199.34 ? N7A COA 902 B 1 HETATM 9 C C8A COA . . . F 3 31.54 3.593 -22.17 1 202.39 ? C8A COA 902 B 1 HETATM 10 N N9A COA . . . F 3 31.016 4.769 -21.753 1 205.05 ? N9A COA 902 B 1 HETATM 11 C C1B COA . . . F 3 29.759 5.295 -22.378 1 214.99 ? C1B COA 902 B 1 HETATM 12 C C2B COA . . . F 3 28.879 6.208 -21.54 1 219.3 ? C2B COA 902 B 1 HETATM 13 O O2B COA . . . F 3 28.16 5.482 -20.545 1 235.27 ? O2B COA 902 B 1 HETATM 14 C C3B COA . . . F 3 27.985 6.804 -22.618 1 220.04 ? C3B COA 902 B 1 HETATM 15 O O3B COA . . . F 3 26.917 5.882 -22.929 1 209.56 ? O3B COA 902 B 1 HETATM 16 P P3B COA . . . F 3 25.741 6.018 -24.04 1 198.59 ? P3B COA 902 B 1 HETATM 17 O O7A COA . . . F 3 24.653 5.051 -23.62 1 193.94 ? O7A COA 902 B 1 HETATM 18 O O8A COA . . . F 3 25.265 7.445 -24.043 1 196.68 -1 O8A COA 902 B 1 HETATM 19 O O9A COA . . . F 3 26.486 5.629 -25.283 1 203.29 ? O9A COA 902 B 1 HETATM 20 C C4B COA . . . F 3 29.012 7.073 -23.718 1 225.41 ? C4B COA 902 B 1 HETATM 21 O O4B COA . . . F 3 30.022 6.066 -23.557 1 223.5 ? O4B COA 902 B 1 HETATM 22 C C5B COA . . . F 3 29.664 8.471 -23.654 1 235.11 ? C5B COA 902 B 1 HETATM 23 O O5B COA . . . F 3 29.362 9.208 -22.447 1 243.08 ? O5B COA 902 B 1 HETATM 24 P P1A COA . . . F 3 30.223 10.47 -21.886 1 243.77 ? P1A COA 902 B 1 HETATM 25 O O1A COA . . . F 3 30.644 10.118 -20.466 1 222.39 -1 O1A COA 902 B 1 HETATM 26 O O2A COA . . . F 3 31.291 10.861 -22.891 1 244.62 ? O2A COA 902 B 1 HETATM 27 O O3A COA . . . F 3 29.136 11.684 -21.829 1 238.11 ? O3A COA 902 B 1 HETATM 28 P P2A COA . . . F 3 28.043 12.03 -22.985 1 219.87 ? P2A COA 902 B 1 HETATM 29 O O4A COA . . . F 3 26.657 11.833 -22.407 1 218.32 -1 O4A COA 902 B 1 HETATM 30 O O5A COA . . . F 3 28.418 11.327 -24.265 1 219.45 ? O5A COA 902 B 1 HETATM 31 O O6A COA . . . F 3 28.201 13.606 -23.263 1 209.59 ? O6A COA 902 B 1 HETATM 32 C CBP COA . . . F 3 29.76 15.106 -22.426 1 219.92 ? CBP COA 902 B 1 HETATM 33 C CCP COA . . . F 3 28.379 14.534 -22.203 1 213.68 ? CCP COA 902 B 1 HETATM 34 C CDP COA . . . F 3 29.865 16.131 -23.529 1 221.63 ? CDP COA 902 B 1 HETATM 35 C CEP COA . . . F 3 31.032 14.433 -21.923 1 217.88 ? CEP COA 902 B 1 HETATM 36 C CAP COA . . . F 3 29.598 16.117 -21.195 1 227.68 ? CAP COA 902 B 1 HETATM 37 O OAP COA . . . F 3 29.617 15.452 -19.913 1 230.93 ? OAP COA 902 B 1 HETATM 38 C C9P COA . . . F 3 30.583 17.263 -21.038 1 231.8 ? C9P COA 902 B 1 HETATM 39 O O9P COA . . . F 3 30.379 18.314 -21.63 1 247.69 ? O9P COA 902 B 1 HETATM 40 N N8P COA . . . F 3 31.645 17.059 -20.254 1 223.66 ? N8P COA 902 B 1 HETATM 41 C C7P COA . . . F 3 32.744 17.999 -20.148 1 224.26 ? C7P COA 902 B 1 HETATM 42 C C6P COA . . . F 3 32.427 19.364 -19.569 1 228.19 ? C6P COA 902 B 1 HETATM 43 C C5P COA . . . F 3 31.826 19.243 -18.185 1 229.03 ? C5P COA 902 B 1 HETATM 44 O O5P COA . . . F 3 30.942 18.42 -17.97 1 236.45 ? O5P COA 902 B 1 HETATM 45 N N4P COA . . . F 3 32.141 20.262 -17.414 1 225.39 ? N4P COA 902 B 1 HETATM 46 C C3P COA . . . F 3 31.012 20.891 -16.74 1 216.84 ? C3P COA 902 B 1 HETATM 47 C C2P COA . . . F 3 31.367 21.99 -15.762 1 211.88 ? C2P COA 902 B 1 HETATM 48 S S1P COA . . . F 3 32.799 21.482 -14.786 1 206.94 ? S1P COA 902 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #