data_5L1X # _model_server_result.job_id Q8_QDY9AHTslNV69eo9fRw _model_server_result.datetime_utc '2024-10-28 02:22:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l1x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":504}' # _entry.id 5L1X # _exptl.entry_id 5L1X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5L1X _cell.length_a 128.72 _cell.length_b 128.72 _cell.length_c 572.79 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L1X _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,M,N,O,S,T,U,V,W,X 1 1 G,H,I,J,K,L,P,Q,R,Y,Z,AA,BA,CA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 T N N ? 7 V N N ? 7 X N N ? 7 Y N N ? 7 BA N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 1 FUC NAG C1 O1 . O6 HO6 . sing 3 ? 4 2 1 FUC NAG C1 O1 . O6 HO6 . sing 4 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n M NAG 1 M 1 NAG B 853 NAG 3 n M NAG 2 M 2 NAG B 854 NAG 3 n M FUC 3 M 3 FUC B 855 FUC 3 n N NAG 1 N 1 NAG C 557 NAG 3 n N NAG 2 N 2 NAG C 558 NAG 3 n N FUC 3 N 3 FUC C 559 FUC 4 n O NAG 1 O 1 NAG F 853 NAG 4 n O FUC 2 O 2 FUC F 854 FUC 5 n P NAG 1 P 1 NAG H 672 NAG 5 n P NAG 2 P 2 NAG H 673 NAG 4 n Q NAG 1 Q 1 NAG H 853 NAG 4 n Q FUC 2 Q 2 FUC H 854 FUC 3 n R NAG 1 R 1 NAG L 853 NAG 3 n R NAG 2 R 2 NAG L 854 NAG 3 n R FUC 3 R 3 FUC L 855 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 28 1_555 B SG CYS 296 B CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 42 A CYS 60 1_555 B SG CYS 71 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 B SG CYS 172 B CYS 283 1_555 B SG CYS 200 B CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 181 B CYS 292 1_555 B SG CYS 190 B CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 B SG CYS 215 B CYS 326 1_555 B SG CYS 224 B CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 B SG CYS 239 B CYS 350 1_555 B SG CYS 250 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf7 B SG CYS 273 B CYS 384 1_555 B SG CYS 279 B CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 C SG CYS 10 C CYS 28 1_555 D SG CYS 296 D CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 C SG CYS 42 C CYS 60 1_555 D SG CYS 71 D CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf10 D SG CYS 172 D CYS 283 1_555 D SG CYS 200 D CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf11 D SG CYS 181 D CYS 292 1_555 D SG CYS 190 D CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf12 D SG CYS 215 D CYS 326 1_555 D SG CYS 224 D CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf13 D SG CYS 239 D CYS 350 1_555 D SG CYS 250 D CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf14 D SG CYS 273 D CYS 384 1_555 D SG CYS 279 D CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf15 E SG CYS 10 E CYS 28 1_555 F SG CYS 296 F CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf16 E SG CYS 42 E CYS 60 1_555 F SG CYS 71 F CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf17 F SG CYS 172 F CYS 283 1_555 F SG CYS 200 F CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf18 F SG CYS 181 F CYS 292 1_555 F SG CYS 190 F CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf19 F SG CYS 215 F CYS 326 1_555 F SG CYS 224 F CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf20 F SG CYS 239 F CYS 350 1_555 F SG CYS 250 F CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf21 F SG CYS 273 F CYS 384 1_555 F SG CYS 279 F CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf22 G SG CYS 10 G CYS 28 1_555 H SG CYS 296 H CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf23 G SG CYS 42 G CYS 60 1_555 H SG CYS 71 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf24 H SG CYS 172 H CYS 283 1_555 H SG CYS 200 H CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf25 H SG CYS 181 H CYS 292 1_555 H SG CYS 190 H CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf26 H SG CYS 215 H CYS 326 1_555 H SG CYS 224 H CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf27 H SG CYS 239 H CYS 350 1_555 H SG CYS 250 H CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf28 H SG CYS 273 H CYS 384 1_555 H SG CYS 279 H CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf29 I SG CYS 10 I CYS 28 1_555 J SG CYS 296 J CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf30 I SG CYS 42 I CYS 60 1_555 J SG CYS 71 J CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf31 J SG CYS 172 J CYS 283 1_555 J SG CYS 200 J CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf32 J SG CYS 181 J CYS 292 1_555 J SG CYS 190 J CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf33 J SG CYS 215 J CYS 326 1_555 J SG CYS 224 J CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf34 J SG CYS 239 J CYS 350 1_555 J SG CYS 250 J CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf35 J SG CYS 273 J CYS 384 1_555 J SG CYS 279 J CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf36 K SG CYS 10 K CYS 28 1_555 L SG CYS 296 L CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf37 K SG CYS 42 K CYS 60 1_555 L SG CYS 71 L CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf38 L SG CYS 172 L CYS 283 1_555 L SG CYS 200 L CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf39 L SG CYS 181 L CYS 292 1_555 L SG CYS 190 L CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf40 L SG CYS 215 L CYS 326 1_555 L SG CYS 224 L CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf41 L SG CYS 239 L CYS 350 1_555 L SG CYS 250 L CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf42 L SG CYS 273 L CYS 384 1_555 L SG CYS 279 L CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 B ND2 ASN 61 B ASN 172 1_555 S C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 B ND2 ASN 242 B ASN 353 1_555 M C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale3 C ND2 ASN 39 C ASN 57 1_555 N C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 D ND2 ASN 61 D ASN 172 1_555 U C1 NAG . D NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale5 F ND2 ASN 61 F ASN 172 1_555 W C1 NAG . F NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale6 F ND2 ASN 242 F ASN 353 1_555 O C1 NAG . O NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale7 H ND2 ASN 61 H ASN 172 1_555 P C1 NAG . P NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale8 H ND2 ASN 242 H ASN 353 1_555 Q C1 NAG . Q NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale9 I ND2 ASN 39 I ASN 57 1_555 Z C1 NAG . I NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale10 J ND2 ASN 61 J ASN 172 1_555 AA C1 NAG . J NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale11 L ND2 ASN 61 L ASN 172 1_555 CA C1 NAG . L NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale12 L ND2 ASN 242 L ASN 353 1_555 R C1 NAG . R NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale13 M O4 NAG . M NAG 1 1_555 M C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale14 M O6 NAG . M NAG 1 1_555 M C1 FUC . M FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale15 N O4 NAG . N NAG 1 1_555 N C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale16 N O6 NAG . N NAG 1 1_555 N C1 FUC . N FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale17 O O6 NAG . O NAG 1 1_555 O C1 FUC . O FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale18 P O4 NAG . P NAG 1 1_555 P C1 NAG . P NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale19 Q O6 NAG . Q NAG 1 1_555 Q C1 FUC . Q FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale20 R O4 NAG . R NAG 1 1_555 R C1 NAG . R NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale21 R O6 NAG . R NAG 1 1_555 R C1 FUC . R FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 341 n n S O2 SO4 doub 342 n n S O3 SO4 sing 343 n n S O4 SO4 sing 344 n n # _atom_sites.entry_id 5L1X _atom_sites.fract_transf_matrix[1][1] 0.007769 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007769 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001746 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code S 6 NAG B 1 501 672 NAG NAG . T 7 SO4 B 1 505 3 SO4 SO4 . U 6 NAG D 1 501 672 NAG NAG . V 7 SO4 D 1 502 2 SO4 SO4 . W 6 NAG F 1 501 672 NAG NAG . X 7 SO4 F 1 504 5 SO4 SO4 . Y 7 SO4 H 1 505 4 SO4 SO4 . Z 6 NAG I 1 201 557 NAG NAG . AA 6 NAG J 1 501 672 NAG NAG . BA 7 SO4 J 1 502 1 SO4 SO4 . CA 6 NAG L 1 501 672 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . X 7 26.626 -30.67 103.154 1 140.1 ? S SO4 504 F 1 HETATM 2 O O1 SO4 . . . X 7 26.617 -31.049 101.741 1 140.03 ? O1 SO4 504 F 1 HETATM 3 O O2 SO4 . . . X 7 26.999 -29.262 103.255 1 139.78 ? O2 SO4 504 F 1 HETATM 4 O O3 SO4 . . . X 7 27.58 -31.506 103.88 1 138.24 ? O3 SO4 504 F 1 HETATM 5 O O4 SO4 . . . X 7 25.302 -30.857 103.743 1 141.28 ? O4 SO4 504 F 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 39 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #