data_5L24
#
_model_server_result.job_id            Ez8pFd6ECXGRalhl8wOr2g 
_model_server_result.datetime_utc      '2024-11-24 01:57:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5l24 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    5L24 
#
_exptl.entry_id    5L24 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              949.082 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-{[(4-O-alpha-D-glucopyranosyl-beta-D-glucopyranosyl)oxy]methyl}-2-octyldecyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5L24 
_cell.length_a            116.16 
_cell.length_b            116.16 
_cell.length_c            274.56 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5L24 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
#
_chem_comp.formula           'C43 H80 O22' 
_chem_comp.formula_weight    949.082 
_chem_comp.id                6ZL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-{[(4-O-alpha-D-glucopyranosyl-beta-D-glucopyranosyl)oxy]methyl}-2-octyldecyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C05 C06 6ZL sing 1 n n 
C17 C16 6ZL sing 2 n n 
C15 C16 6ZL sing 3 n n 
C15 C14 6ZL sing 4 n n 
C06 C07 6ZL sing 5 n n 
C14 C13 6ZL sing 6 n n 
C13 C12 6ZL sing 7 n n 
C07 C08 6ZL sing 8 n n 
C11 C12 6ZL sing 9 n n 
C11 C10 6ZL sing 10 n n 
C08 C09 6ZL sing 11 n n 
C10 C09 6ZL sing 12 n n 
O35 C34 6ZL sing 13 n n 
O37 C36 6ZL sing 14 n n 
C09 C18 6ZL sing 15 n n 
C09 C42 6ZL sing 16 n n 
O41 C40 6ZL sing 17 n n 
C18 O19 6ZL sing 18 n n 
C36 C34 6ZL sing 19 n n 
C36 C27 6ZL sing 20 n n 
C20 C40 6ZL sing 21 n n 
C20 O19 6ZL sing 22 n n 
C20 O21 6ZL sing 23 n n 
C34 C32 6ZL sing 24 n n 
C40 C38 6ZL sing 25 n n 
C42 O43 6ZL sing 26 n n 
O21 C22 6ZL sing 27 n n 
O43 C44 6ZL sing 28 n n 
C32 O33 6ZL sing 29 n n 
C32 C29 6ZL sing 30 n n 
O26 C27 6ZL sing 31 n n 
O26 C25 6ZL sing 32 n n 
C27 O28 6ZL sing 33 n n 
C22 C25 6ZL sing 34 n n 
C22 C23 6ZL sing 35 n n 
C38 C25 6ZL sing 36 n n 
C38 O39 6ZL sing 37 n n 
O45 C44 6ZL sing 38 n n 
O45 C46 6ZL sing 39 n n 
C23 O24 6ZL sing 40 n n 
C44 C64 6ZL sing 41 n n 
O31 C30 6ZL sing 42 n n 
C30 C29 6ZL sing 43 n n 
C29 O28 6ZL sing 44 n n 
O48 C47 6ZL sing 45 n n 
C47 C46 6ZL sing 46 n n 
C46 C49 6ZL sing 47 n n 
O63 C62 6ZL sing 48 n n 
C64 C62 6ZL sing 49 n n 
C64 O65 6ZL sing 50 n n 
C62 C49 6ZL sing 51 n n 
C49 O50 6ZL sing 52 n n 
O50 C51 6ZL sing 53 n n 
C51 O52 6ZL sing 54 n n 
C51 C60 6ZL sing 55 n n 
O52 C53 6ZL sing 56 n n 
O61 C60 6ZL sing 57 n n 
C60 C58 6ZL sing 58 n n 
O55 C54 6ZL sing 59 n n 
C53 C54 6ZL sing 60 n n 
C53 C56 6ZL sing 61 n n 
C58 O59 6ZL sing 62 n n 
C58 C56 6ZL sing 63 n n 
C56 O57 6ZL sing 64 n n 
C05 H1 6ZL sing 65 n n 
C05 H2 6ZL sing 66 n n 
C06 H4 6ZL sing 67 n n 
C06 H5 6ZL sing 68 n n 
C07 H6 6ZL sing 69 n n 
C07 H7 6ZL sing 70 n n 
C08 H8 6ZL sing 71 n n 
C08 H9 6ZL sing 72 n n 
C10 H10 6ZL sing 73 n n 
C10 H11 6ZL sing 74 n n 
C11 H12 6ZL sing 75 n n 
C11 H13 6ZL sing 76 n n 
C12 H14 6ZL sing 77 n n 
C12 H15 6ZL sing 78 n n 
C13 H16 6ZL sing 79 n n 
C13 H17 6ZL sing 80 n n 
C14 H18 6ZL sing 81 n n 
C14 H19 6ZL sing 82 n n 
C15 H20 6ZL sing 83 n n 
C15 H21 6ZL sing 84 n n 
C16 H22 6ZL sing 85 n n 
C16 H23 6ZL sing 86 n n 
C17 H24 6ZL sing 87 n n 
C17 H25 6ZL sing 88 n n 
C17 H26 6ZL sing 89 n n 
C18 H27 6ZL sing 90 n n 
C18 H28 6ZL sing 91 n n 
C20 H29 6ZL sing 92 n n 
C22 H30 6ZL sing 93 n n 
C23 H31 6ZL sing 94 n n 
C23 H32 6ZL sing 95 n n 
O24 H33 6ZL sing 96 n n 
C25 H34 6ZL sing 97 n n 
C27 H35 6ZL sing 98 n n 
C29 H36 6ZL sing 99 n n 
C30 H37 6ZL sing 100 n n 
C30 H38 6ZL sing 101 n n 
O31 H39 6ZL sing 102 n n 
C32 H40 6ZL sing 103 n n 
O33 H41 6ZL sing 104 n n 
C34 H42 6ZL sing 105 n n 
O35 H43 6ZL sing 106 n n 
C36 H44 6ZL sing 107 n n 
O37 H45 6ZL sing 108 n n 
C38 H46 6ZL sing 109 n n 
O39 H47 6ZL sing 110 n n 
C40 H48 6ZL sing 111 n n 
O41 H49 6ZL sing 112 n n 
C42 H50 6ZL sing 113 n n 
C42 H51 6ZL sing 114 n n 
C44 H52 6ZL sing 115 n n 
C46 H53 6ZL sing 116 n n 
C47 H54 6ZL sing 117 n n 
C47 H55 6ZL sing 118 n n 
O48 H56 6ZL sing 119 n n 
C49 H57 6ZL sing 120 n n 
C51 H58 6ZL sing 121 n n 
C53 H59 6ZL sing 122 n n 
C54 H60 6ZL sing 123 n n 
C54 H61 6ZL sing 124 n n 
O55 H62 6ZL sing 125 n n 
C56 H63 6ZL sing 126 n n 
O57 H64 6ZL sing 127 n n 
C58 H65 6ZL sing 128 n n 
O59 H66 6ZL sing 129 n n 
C60 H67 6ZL sing 130 n n 
O61 H68 6ZL sing 131 n n 
C62 H69 6ZL sing 132 n n 
O63 H70 6ZL sing 133 n n 
C64 H71 6ZL sing 134 n n 
O65 H72 6ZL sing 135 n n 
C05 C1 6ZL sing 136 n n 
C1 C2 6ZL sing 137 n n 
C2 C3 6ZL sing 138 n n 
C3 C4 6ZL sing 139 n n 
C1 H3 6ZL sing 140 n n 
C1 H73 6ZL sing 141 n n 
C2 H74 6ZL sing 142 n n 
C2 H75 6ZL sing 143 n n 
C3 H76 6ZL sing 144 n n 
C3 H77 6ZL sing 145 n n 
C4 H78 6ZL sing 146 n n 
C4 H79 6ZL sing 147 n n 
C4 H80 6ZL sing 148 n n 
#
_atom_sites.entry_id                     5L24 
_atom_sites.fract_transf_matrix[1][1]    0.008609 
_atom_sites.fract_transf_matrix[1][2]    0.00497 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009941 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003642 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 6ZL B 1 501 1 6ZL 6ZL . 
E 2 6ZL B 1 502 2 6ZL 6ZL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C07 6ZL . . . D 2 -138.591 35.066 10.174 1 100.13 ? C07 6ZL 501 B 1 
HETATM 2 C C08 6ZL . . . D 2 -139.878 34.227 10.212 1 91.9 ? C08 6ZL 501 B 1 
HETATM 3 C C09 6ZL . . . D 2 -139.54 32.758 10.52 1 98.08 ? C09 6ZL 501 B 1 
HETATM 4 C C18 6ZL . . . D 2 -140.748 32.106 11.196 1 111.4 ? C18 6ZL 501 B 1 
HETATM 5 O O19 6ZL . . . D 2 -141.536 31.394 10.236 1 129.63 ? O19 6ZL 501 B 1 
HETATM 6 C C20 6ZL . . . D 2 -140.984 30.202 9.662 1 137.32 ? C20 6ZL 501 B 1 
HETATM 7 O O21 6ZL . . . D 2 -141.879 29.616 8.699 1 142.77 ? O21 6ZL 501 B 1 
HETATM 8 C C22 6ZL . . . D 2 -143.076 28.976 9.167 1 150.13 ? C22 6ZL 501 B 1 
HETATM 9 C C23 6ZL . . . D 2 -144.182 30.025 9.388 1 148.19 ? C23 6ZL 501 B 1 
HETATM 10 O O24 6ZL . . . D 2 -144.735 30.397 8.124 1 137.33 ? O24 6ZL 501 B 1 
HETATM 11 C C25 6ZL . . . D 2 -142.811 28.194 10.468 1 149.84 ? C25 6ZL 501 B 1 
HETATM 12 O O26 6ZL . . . D 2 -143.567 26.982 10.483 1 145.76 ? O26 6ZL 501 B 1 
HETATM 13 C C27 6ZL . . . D 2 -144.196 26.628 11.714 1 142.41 ? C27 6ZL 501 B 1 
HETATM 14 O O28 6ZL . . . D 2 -144.287 27.795 12.531 1 135.94 ? O28 6ZL 501 B 1 
HETATM 15 C C29 6ZL . . . D 2 -144.863 27.583 13.822 1 132.82 ? C29 6ZL 501 B 1 
HETATM 16 C C30 6ZL . . . D 2 -143.958 26.651 14.641 1 123.78 ? C30 6ZL 501 B 1 
HETATM 17 O O31 6ZL . . . D 2 -144.768 25.854 15.504 1 111.19 ? O31 6ZL 501 B 1 
HETATM 18 C C32 6ZL . . . D 2 -146.249 26.94 13.664 1 140.64 ? C32 6ZL 501 B 1 
HETATM 19 O O33 6ZL . . . D 2 -147.22 27.697 14.387 1 141.32 ? O33 6ZL 501 B 1 
HETATM 20 C C34 6ZL . . . D 2 -146.622 26.947 12.177 1 146.25 ? C34 6ZL 501 B 1 
HETATM 21 O O35 6ZL . . . D 2 -147.931 26.402 12.019 1 152.85 ? O35 6ZL 501 B 1 
HETATM 22 C C36 6ZL . . . D 2 -145.602 26.088 11.419 1 148.27 ? C36 6ZL 501 B 1 
HETATM 23 O O37 6ZL . . . D 2 -145.85 26.177 10.017 1 152.02 ? O37 6ZL 501 B 1 
HETATM 24 C C38 6ZL . . . D 2 -141.313 27.873 10.53 1 144.83 ? C38 6ZL 501 B 1 
HETATM 25 O O39 6ZL . . . D 2 -141.02 26.983 11.607 1 135.3 ? O39 6ZL 501 B 1 
HETATM 26 C C40 6ZL . . . D 2 -140.601 29.205 10.775 1 141.58 ? C40 6ZL 501 B 1 
HETATM 27 O O41 6ZL . . . D 2 -139.192 28.976 10.77 1 138.52 ? O41 6ZL 501 B 1 
HETATM 28 C C42 6ZL . . . D 2 -138.318 32.68 11.456 1 85.18 ? C42 6ZL 501 B 1 
HETATM 29 O O43 6ZL . . . D 2 -138.792 32.762 12.797 1 95.26 ? O43 6ZL 501 B 1 
HETATM 30 C C44 6ZL . . . D 2 -137.921 32.508 13.903 1 98.86 ? C44 6ZL 501 B 1 
HETATM 31 O O45 6ZL . . . D 2 -136.971 33.553 14.087 1 92.27 ? O45 6ZL 501 B 1 
HETATM 32 C C46 6ZL . . . D 2 -136.279 33.443 15.333 1 98.95 ? C46 6ZL 501 B 1 
HETATM 33 C C47 6ZL . . . D 2 -135.263 34.586 15.438 1 109.38 ? C47 6ZL 501 B 1 
HETATM 34 O O48 6ZL . . . D 2 -133.998 34.038 15.815 1 109.43 ? O48 6ZL 501 B 1 
HETATM 35 C C49 6ZL . . . D 2 -135.497 32.117 15.391 1 98.86 ? C49 6ZL 501 B 1 
HETATM 36 O O50 6ZL . . . D 2 -134.842 31.956 16.663 1 101.95 ? O50 6ZL 501 B 1 
HETATM 37 C C51 6ZL . . . D 2 -135.541 32.07 17.906 1 99.04 ? C51 6ZL 501 B 1 
HETATM 38 O O52 6ZL . . . D 2 -135.316 30.886 18.663 1 100.2 ? O52 6ZL 501 B 1 
HETATM 39 C C53 6ZL . . . D 2 -135.938 30.83 19.955 1 89.46 ? C53 6ZL 501 B 1 
HETATM 40 C C54 6ZL . . . D 2 -137.463 30.678 19.794 1 77.27 ? C54 6ZL 501 B 1 
HETATM 41 O O55 6ZL . . . D 2 -137.78 29.307 19.537 1 86.24 ? O55 6ZL 501 B 1 
HETATM 42 C C56 6ZL . . . D 2 -135.609 32.055 20.838 1 89.37 ? C56 6ZL 501 B 1 
HETATM 43 O O57 6ZL . . . D 2 -134.316 31.886 21.418 1 72.97 ? O57 6ZL 501 B 1 
HETATM 44 C C58 6ZL . . . D 2 -135.627 33.375 20.048 1 100.37 ? C58 6ZL 501 B 1 
HETATM 45 O O59 6ZL . . . D 2 -136.974 33.767 19.801 1 97.24 ? O59 6ZL 501 B 1 
HETATM 46 C C60 6ZL . . . D 2 -134.899 33.2 18.711 1 97.99 ? C60 6ZL 501 B 1 
HETATM 47 O O61 6ZL . . . D 2 -133.552 32.818 18.973 1 96.2 ? O61 6ZL 501 B 1 
HETATM 48 C C62 6ZL . . . D 2 -136.429 30.933 15.069 1 104.74 ? C62 6ZL 501 B 1 
HETATM 49 O O63 6ZL . . . D 2 -135.654 29.736 14.979 1 109.07 ? O63 6ZL 501 B 1 
HETATM 50 C C64 6ZL . . . D 2 -137.138 31.204 13.728 1 105.46 ? C64 6ZL 501 B 1 
HETATM 51 O O65 6ZL . . . D 2 -138.049 30.148 13.428 1 110.49 ? O65 6ZL 501 B 1 
#
_model_server_stats.io_time_ms              582 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           802 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           51 
#