data_5L24 # _model_server_result.job_id C58HuhWI6-vJAg_p9XZ8yg _model_server_result.datetime_utc '2024-11-14 17:00:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l24 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":502}' # _entry.id 5L24 # _exptl.entry_id 5L24 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 949.082 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-{[(4-O-alpha-D-glucopyranosyl-beta-D-glucopyranosyl)oxy]methyl}-2-octyldecyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5L24 _cell.length_a 116.16 _cell.length_b 116.16 _cell.length_c 274.56 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L24 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N # _chem_comp.formula 'C43 H80 O22' _chem_comp.formula_weight 949.082 _chem_comp.id 6ZL _chem_comp.mon_nstd_flag . _chem_comp.name '2-{[(4-O-alpha-D-glucopyranosyl-beta-D-glucopyranosyl)oxy]methyl}-2-octyldecyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C05 C06 6ZL sing 1 n n C17 C16 6ZL sing 2 n n C15 C16 6ZL sing 3 n n C15 C14 6ZL sing 4 n n C06 C07 6ZL sing 5 n n C14 C13 6ZL sing 6 n n C13 C12 6ZL sing 7 n n C07 C08 6ZL sing 8 n n C11 C12 6ZL sing 9 n n C11 C10 6ZL sing 10 n n C08 C09 6ZL sing 11 n n C10 C09 6ZL sing 12 n n O35 C34 6ZL sing 13 n n O37 C36 6ZL sing 14 n n C09 C18 6ZL sing 15 n n C09 C42 6ZL sing 16 n n O41 C40 6ZL sing 17 n n C18 O19 6ZL sing 18 n n C36 C34 6ZL sing 19 n n C36 C27 6ZL sing 20 n n C20 C40 6ZL sing 21 n n C20 O19 6ZL sing 22 n n C20 O21 6ZL sing 23 n n C34 C32 6ZL sing 24 n n C40 C38 6ZL sing 25 n n C42 O43 6ZL sing 26 n n O21 C22 6ZL sing 27 n n O43 C44 6ZL sing 28 n n C32 O33 6ZL sing 29 n n C32 C29 6ZL sing 30 n n O26 C27 6ZL sing 31 n n O26 C25 6ZL sing 32 n n C27 O28 6ZL sing 33 n n C22 C25 6ZL sing 34 n n C22 C23 6ZL sing 35 n n C38 C25 6ZL sing 36 n n C38 O39 6ZL sing 37 n n O45 C44 6ZL sing 38 n n O45 C46 6ZL sing 39 n n C23 O24 6ZL sing 40 n n C44 C64 6ZL sing 41 n n O31 C30 6ZL sing 42 n n C30 C29 6ZL sing 43 n n C29 O28 6ZL sing 44 n n O48 C47 6ZL sing 45 n n C47 C46 6ZL sing 46 n n C46 C49 6ZL sing 47 n n O63 C62 6ZL sing 48 n n C64 C62 6ZL sing 49 n n C64 O65 6ZL sing 50 n n C62 C49 6ZL sing 51 n n C49 O50 6ZL sing 52 n n O50 C51 6ZL sing 53 n n C51 O52 6ZL sing 54 n n C51 C60 6ZL sing 55 n n O52 C53 6ZL sing 56 n n O61 C60 6ZL sing 57 n n C60 C58 6ZL sing 58 n n O55 C54 6ZL sing 59 n n C53 C54 6ZL sing 60 n n C53 C56 6ZL sing 61 n n C58 O59 6ZL sing 62 n n C58 C56 6ZL sing 63 n n C56 O57 6ZL sing 64 n n C05 H1 6ZL sing 65 n n C05 H2 6ZL sing 66 n n C06 H4 6ZL sing 67 n n C06 H5 6ZL sing 68 n n C07 H6 6ZL sing 69 n n C07 H7 6ZL sing 70 n n C08 H8 6ZL sing 71 n n C08 H9 6ZL sing 72 n n C10 H10 6ZL sing 73 n n C10 H11 6ZL sing 74 n n C11 H12 6ZL sing 75 n n C11 H13 6ZL sing 76 n n C12 H14 6ZL sing 77 n n C12 H15 6ZL sing 78 n n C13 H16 6ZL sing 79 n n C13 H17 6ZL sing 80 n n C14 H18 6ZL sing 81 n n C14 H19 6ZL sing 82 n n C15 H20 6ZL sing 83 n n C15 H21 6ZL sing 84 n n C16 H22 6ZL sing 85 n n C16 H23 6ZL sing 86 n n C17 H24 6ZL sing 87 n n C17 H25 6ZL sing 88 n n C17 H26 6ZL sing 89 n n C18 H27 6ZL sing 90 n n C18 H28 6ZL sing 91 n n C20 H29 6ZL sing 92 n n C22 H30 6ZL sing 93 n n C23 H31 6ZL sing 94 n n C23 H32 6ZL sing 95 n n O24 H33 6ZL sing 96 n n C25 H34 6ZL sing 97 n n C27 H35 6ZL sing 98 n n C29 H36 6ZL sing 99 n n C30 H37 6ZL sing 100 n n C30 H38 6ZL sing 101 n n O31 H39 6ZL sing 102 n n C32 H40 6ZL sing 103 n n O33 H41 6ZL sing 104 n n C34 H42 6ZL sing 105 n n O35 H43 6ZL sing 106 n n C36 H44 6ZL sing 107 n n O37 H45 6ZL sing 108 n n C38 H46 6ZL sing 109 n n O39 H47 6ZL sing 110 n n C40 H48 6ZL sing 111 n n O41 H49 6ZL sing 112 n n C42 H50 6ZL sing 113 n n C42 H51 6ZL sing 114 n n C44 H52 6ZL sing 115 n n C46 H53 6ZL sing 116 n n C47 H54 6ZL sing 117 n n C47 H55 6ZL sing 118 n n O48 H56 6ZL sing 119 n n C49 H57 6ZL sing 120 n n C51 H58 6ZL sing 121 n n C53 H59 6ZL sing 122 n n C54 H60 6ZL sing 123 n n C54 H61 6ZL sing 124 n n O55 H62 6ZL sing 125 n n C56 H63 6ZL sing 126 n n O57 H64 6ZL sing 127 n n C58 H65 6ZL sing 128 n n O59 H66 6ZL sing 129 n n C60 H67 6ZL sing 130 n n O61 H68 6ZL sing 131 n n C62 H69 6ZL sing 132 n n O63 H70 6ZL sing 133 n n C64 H71 6ZL sing 134 n n O65 H72 6ZL sing 135 n n C05 C1 6ZL sing 136 n n C1 C2 6ZL sing 137 n n C2 C3 6ZL sing 138 n n C3 C4 6ZL sing 139 n n C1 H3 6ZL sing 140 n n C1 H73 6ZL sing 141 n n C2 H74 6ZL sing 142 n n C2 H75 6ZL sing 143 n n C3 H76 6ZL sing 144 n n C3 H77 6ZL sing 145 n n C4 H78 6ZL sing 146 n n C4 H79 6ZL sing 147 n n C4 H80 6ZL sing 148 n n # _atom_sites.entry_id 5L24 _atom_sites.fract_transf_matrix[1][1] 0.008609 _atom_sites.fract_transf_matrix[1][2] 0.00497 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009941 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003642 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 6ZL B 1 501 1 6ZL 6ZL . E 2 6ZL B 1 502 2 6ZL 6ZL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C05 6ZL . . . E 2 -131.728 39.249 6.281 1 65.81 ? C05 6ZL 502 B 1 HETATM 2 C C06 6ZL . . . E 2 -130.789 38.507 7.245 1 66.53 ? C06 6ZL 502 B 1 HETATM 3 C C07 6ZL . . . E 2 -131.182 37.02 7.313 1 77.89 ? C07 6ZL 502 B 1 HETATM 4 C C08 6ZL . . . E 2 -130.029 36.201 7.924 1 92.15 ? C08 6ZL 502 B 1 HETATM 5 C C09 6ZL . . . E 2 -130.304 34.691 7.809 1 101.46 ? C09 6ZL 502 B 1 HETATM 6 C C10 6ZL . . . E 2 -131.072 34.379 6.515 1 97.02 ? C10 6ZL 502 B 1 HETATM 7 C C18 6ZL . . . E 2 -128.977 33.94 7.779 1 91.1 ? C18 6ZL 502 B 1 HETATM 8 C C42 6ZL . . . E 2 -131.122 34.221 9.019 1 98.64 ? C42 6ZL 502 B 1 HETATM 9 O O43 6ZL . . . E 2 -130.65 34.909 10.175 1 94.62 ? O43 6ZL 502 B 1 HETATM 10 C C44 6ZL . . . E 2 -130.055 34.15 11.227 1 104.02 ? C44 6ZL 502 B 1 HETATM 11 O O45 6ZL . . . E 2 -131.025 33.321 11.868 1 110.78 ? O45 6ZL 502 B 1 HETATM 12 C C46 6ZL . . . E 2 -130.456 32.506 12.896 1 112.14 ? C46 6ZL 502 B 1 HETATM 13 C C47 6ZL . . . E 2 -131.496 31.51 13.442 1 106.39 ? C47 6ZL 502 B 1 HETATM 14 O O48 6ZL . . . E 2 -130.825 30.384 14.015 1 100.75 ? O48 6ZL 502 B 1 HETATM 15 C C49 6ZL . . . E 2 -129.937 33.405 14.03 1 108.46 ? C49 6ZL 502 B 1 HETATM 16 O O50 6ZL . . . E 2 -129.335 32.563 15.012 1 109.69 ? O50 6ZL 502 B 1 HETATM 17 C C51 6ZL . . . E 2 -129.21 33.027 16.355 1 109.33 ? C51 6ZL 502 B 1 HETATM 18 O O52 6ZL . . . E 2 -130.475 32.971 17.007 1 111.92 ? O52 6ZL 502 B 1 HETATM 19 C C53 6ZL . . . E 2 -130.469 33.503 18.333 1 97.5 ? C53 6ZL 502 B 1 HETATM 20 C C54 6ZL . . . E 2 -130.162 35.01 18.293 1 92.51 ? C54 6ZL 502 B 1 HETATM 21 O O55 6ZL . . . E 2 -130.902 35.623 17.237 1 83.87 ? O55 6ZL 502 B 1 HETATM 22 C C56 6ZL . . . E 2 -129.445 32.764 19.223 1 95.15 ? C56 6ZL 502 B 1 HETATM 23 O O57 6ZL . . . E 2 -129.954 31.463 19.522 1 86.65 ? O57 6ZL 502 B 1 HETATM 24 C C58 6ZL . . . E 2 -128.07 32.589 18.547 1 99.54 ? C58 6ZL 502 B 1 HETATM 25 O O59 6ZL . . . E 2 -127.332 33.813 18.583 1 93.7 ? O59 6ZL 502 B 1 HETATM 26 C C60 6ZL . . . E 2 -128.232 32.108 17.095 1 103.56 ? C60 6ZL 502 B 1 HETATM 27 O O61 6ZL . . . E 2 -128.763 30.784 17.09 1 103.25 ? O61 6ZL 502 B 1 HETATM 28 C C62 6ZL . . . E 2 -128.886 34.357 13.437 1 106.14 ? C62 6ZL 502 B 1 HETATM 29 O O63 6ZL . . . E 2 -128.474 35.303 14.42 1 93.9 ? O63 6ZL 502 B 1 HETATM 30 C C64 6ZL . . . E 2 -129.49 35.131 12.258 1 107.78 ? C64 6ZL 502 B 1 HETATM 31 O O65 6ZL . . . E 2 -128.471 35.899 11.626 1 104.04 ? O65 6ZL 502 B 1 HETATM 32 C C1 6ZL . . . E 2 -130.948 40.384 5.597 1 70.26 ? C1 6ZL 502 B 1 HETATM 33 C C2 6ZL . . . E 2 -131.569 41.738 5.975 1 78.62 ? C2 6ZL 502 B 1 HETATM 34 C C3 6ZL . . . E 2 -131.909 42.532 4.703 1 69.39 ? C3 6ZL 502 B 1 HETATM 35 C C4 6ZL . . . E 2 -133.008 43.564 5.014 1 64.29 ? C4 6ZL 502 B 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 35 #