data_5L26 # _model_server_result.job_id pwF_UMugbryaVhOawagESQ _model_server_result.datetime_utc '2024-10-19 14:39:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l26 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 5L26 # _exptl.entry_id 5L26 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 949.082 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-{[(4-O-alpha-D-glucopyranosyl-beta-D-glucopyranosyl)oxy]methyl}-2-octyldecyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5L26 _cell.length_a 115.22 _cell.length_b 115.22 _cell.length_c 264.028 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L26 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 O N N ? 2 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASN 155 A ASN 149 1_555 I NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc2 A OD1 ASN 155 A ASN 149 1_555 I NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc3 A O VAL 158 A VAL 152 1_555 I NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc4 A OG SER 189 A SER 183 1_555 I NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc5 A O VAL 190 A VAL 184 1_555 I NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc6 I NA NA . A NA 506 1_555 S O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc7 B O ASN 155 B ASN 149 1_555 N NA NA . B NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc8 B OD1 ASN 155 B ASN 149 1_555 N NA NA . B NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc9 B O VAL 158 B VAL 152 1_555 N NA NA . B NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc10 B OG SER 189 B SER 183 1_555 N NA NA . B NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc11 B O VAL 190 B VAL 184 1_555 N NA NA . B NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc12 N NA NA . B NA 505 1_555 T O HOH . B HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc13 C O ASN 155 C ASN 149 1_555 R NA NA . C NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc14 C OD1 ASN 155 C ASN 149 1_555 R NA NA . C NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc15 C O VAL 158 C VAL 152 1_555 R NA NA . C NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc16 C OG SER 189 C SER 183 1_555 R NA NA . C NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc17 C O VAL 190 C VAL 184 1_555 R NA NA . C NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc18 R NA NA . C NA 504 1_555 U O HOH . C HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? # _chem_comp.formula 'C43 H80 O22' _chem_comp.formula_weight 949.082 _chem_comp.id 6ZL _chem_comp.mon_nstd_flag . _chem_comp.name '2-{[(4-O-alpha-D-glucopyranosyl-beta-D-glucopyranosyl)oxy]methyl}-2-octyldecyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C05 C06 6ZL sing 1 n n C17 C16 6ZL sing 2 n n C15 C16 6ZL sing 3 n n C15 C14 6ZL sing 4 n n C06 C07 6ZL sing 5 n n C14 C13 6ZL sing 6 n n C13 C12 6ZL sing 7 n n C07 C08 6ZL sing 8 n n C11 C12 6ZL sing 9 n n C11 C10 6ZL sing 10 n n C08 C09 6ZL sing 11 n n C10 C09 6ZL sing 12 n n O35 C34 6ZL sing 13 n n O37 C36 6ZL sing 14 n n C09 C18 6ZL sing 15 n n C09 C42 6ZL sing 16 n n O41 C40 6ZL sing 17 n n C18 O19 6ZL sing 18 n n C36 C34 6ZL sing 19 n n C36 C27 6ZL sing 20 n n C20 C40 6ZL sing 21 n n C20 O19 6ZL sing 22 n n C20 O21 6ZL sing 23 n n C34 C32 6ZL sing 24 n n C40 C38 6ZL sing 25 n n C42 O43 6ZL sing 26 n n O21 C22 6ZL sing 27 n n O43 C44 6ZL sing 28 n n C32 O33 6ZL sing 29 n n C32 C29 6ZL sing 30 n n O26 C27 6ZL sing 31 n n O26 C25 6ZL sing 32 n n C27 O28 6ZL sing 33 n n C22 C25 6ZL sing 34 n n C22 C23 6ZL sing 35 n n C38 C25 6ZL sing 36 n n C38 O39 6ZL sing 37 n n O45 C44 6ZL sing 38 n n O45 C46 6ZL sing 39 n n C23 O24 6ZL sing 40 n n C44 C64 6ZL sing 41 n n O31 C30 6ZL sing 42 n n C30 C29 6ZL sing 43 n n C29 O28 6ZL sing 44 n n O48 C47 6ZL sing 45 n n C47 C46 6ZL sing 46 n n C46 C49 6ZL sing 47 n n O63 C62 6ZL sing 48 n n C64 C62 6ZL sing 49 n n C64 O65 6ZL sing 50 n n C62 C49 6ZL sing 51 n n C49 O50 6ZL sing 52 n n O50 C51 6ZL sing 53 n n C51 O52 6ZL sing 54 n n C51 C60 6ZL sing 55 n n O52 C53 6ZL sing 56 n n O61 C60 6ZL sing 57 n n C60 C58 6ZL sing 58 n n O55 C54 6ZL sing 59 n n C53 C54 6ZL sing 60 n n C53 C56 6ZL sing 61 n n C58 O59 6ZL sing 62 n n C58 C56 6ZL sing 63 n n C56 O57 6ZL sing 64 n n C05 H1 6ZL sing 65 n n C05 H2 6ZL sing 66 n n C06 H4 6ZL sing 67 n n C06 H5 6ZL sing 68 n n C07 H6 6ZL sing 69 n n C07 H7 6ZL sing 70 n n C08 H8 6ZL sing 71 n n C08 H9 6ZL sing 72 n n C10 H10 6ZL sing 73 n n C10 H11 6ZL sing 74 n n C11 H12 6ZL sing 75 n n C11 H13 6ZL sing 76 n n C12 H14 6ZL sing 77 n n C12 H15 6ZL sing 78 n n C13 H16 6ZL sing 79 n n C13 H17 6ZL sing 80 n n C14 H18 6ZL sing 81 n n C14 H19 6ZL sing 82 n n C15 H20 6ZL sing 83 n n C15 H21 6ZL sing 84 n n C16 H22 6ZL sing 85 n n C16 H23 6ZL sing 86 n n C17 H24 6ZL sing 87 n n C17 H25 6ZL sing 88 n n C17 H26 6ZL sing 89 n n C18 H27 6ZL sing 90 n n C18 H28 6ZL sing 91 n n C20 H29 6ZL sing 92 n n C22 H30 6ZL sing 93 n n C23 H31 6ZL sing 94 n n C23 H32 6ZL sing 95 n n O24 H33 6ZL sing 96 n n C25 H34 6ZL sing 97 n n C27 H35 6ZL sing 98 n n C29 H36 6ZL sing 99 n n C30 H37 6ZL sing 100 n n C30 H38 6ZL sing 101 n n O31 H39 6ZL sing 102 n n C32 H40 6ZL sing 103 n n O33 H41 6ZL sing 104 n n C34 H42 6ZL sing 105 n n O35 H43 6ZL sing 106 n n C36 H44 6ZL sing 107 n n O37 H45 6ZL sing 108 n n C38 H46 6ZL sing 109 n n O39 H47 6ZL sing 110 n n C40 H48 6ZL sing 111 n n O41 H49 6ZL sing 112 n n C42 H50 6ZL sing 113 n n C42 H51 6ZL sing 114 n n C44 H52 6ZL sing 115 n n C46 H53 6ZL sing 116 n n C47 H54 6ZL sing 117 n n C47 H55 6ZL sing 118 n n O48 H56 6ZL sing 119 n n C49 H57 6ZL sing 120 n n C51 H58 6ZL sing 121 n n C53 H59 6ZL sing 122 n n C54 H60 6ZL sing 123 n n C54 H61 6ZL sing 124 n n O55 H62 6ZL sing 125 n n C56 H63 6ZL sing 126 n n O57 H64 6ZL sing 127 n n C58 H65 6ZL sing 128 n n O59 H66 6ZL sing 129 n n C60 H67 6ZL sing 130 n n O61 H68 6ZL sing 131 n n C62 H69 6ZL sing 132 n n O63 H70 6ZL sing 133 n n C64 H71 6ZL sing 134 n n O65 H72 6ZL sing 135 n n C05 C1 6ZL sing 136 n n C1 C2 6ZL sing 137 n n C2 C3 6ZL sing 138 n n C3 C4 6ZL sing 139 n n C1 H3 6ZL sing 140 n n C1 H73 6ZL sing 141 n n C2 H74 6ZL sing 142 n n C2 H75 6ZL sing 143 n n C3 H76 6ZL sing 144 n n C3 H77 6ZL sing 145 n n C4 H78 6ZL sing 146 n n C4 H79 6ZL sing 147 n n C4 H80 6ZL sing 148 n n # _atom_sites.entry_id 5L26 _atom_sites.fract_transf_matrix[1][1] 0.008679 _atom_sites.fract_transf_matrix[1][2] 0.005011 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010022 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003787 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 6ZL A 1 501 7 6ZL 6ZL . E 2 6ZL A 1 502 10 6ZL 6ZL . F 2 6ZL A 1 503 12 6ZL 6ZL . G 2 6ZL A 1 504 13 6ZL 6ZL . H 3 URI A 1 505 419 URI URI . I 4 NA A 1 506 1 NA NA . J 2 6ZL B 1 501 4 6ZL 6ZL . K 2 6ZL B 1 502 9 6ZL 6ZL . L 2 6ZL B 1 503 11 6ZL 6ZL . M 3 URI B 1 504 421 URI URI . N 4 NA B 1 505 3 NA NA . O 2 6ZL C 1 501 14 6ZL 6ZL . P 2 6ZL C 1 502 15 6ZL 6ZL . Q 3 URI C 1 503 420 URI URI . R 4 NA C 1 504 2 NA NA . S 5 HOH A 1 601 7 HOH HOH . T 5 HOH B 1 601 8 HOH HOH . U 5 HOH C 1 601 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C09 6ZL . . . D 2 -90.985 45.242 0.79 1 65.61 ? C09 6ZL 501 A 1 HETATM 2 C C10 6ZL . . . D 2 -90.688 46.385 1.861 1 85.96 ? C10 6ZL 501 A 1 HETATM 3 C C11 6ZL . . . D 2 -90.283 47.802 1.341 1 82.22 ? C11 6ZL 501 A 1 HETATM 4 C C12 6ZL . . . D 2 -90.023 48.946 2.365 1 84.51 ? C12 6ZL 501 A 1 HETATM 5 C C13 6ZL . . . D 2 -89.58 50.309 1.732 1 86.65 ? C13 6ZL 501 A 1 HETATM 6 C C14 6ZL . . . D 2 -88.96 51.339 2.713 1 92.31 ? C14 6ZL 501 A 1 HETATM 7 C C15 6ZL . . . D 2 -88.489 52.675 2.073 1 85.66 ? C15 6ZL 501 A 1 HETATM 8 C C16 6ZL . . . D 2 -87.253 53.309 2.741 1 86.65 ? C16 6ZL 501 A 1 HETATM 9 C C17 6ZL . . . D 2 -86.353 54.11 1.798 1 68.1 ? C17 6ZL 501 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 370 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 9 #