data_5L2I # _model_server_result.job_id ndCtFpd-WQiKV1w3G5jTVA _model_server_result.datetime_utc '2024-12-10 07:59:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l2i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":900}' # _entry.id 5L2I # _exptl.entry_id 5L2I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 447.533 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-ACETYL-8-CYCLOPENTYL-5-METHYL-2-[(5-PIPERAZIN-1-YLPYRIDIN-2-YL)AMINO]PYRIDO[2,3-D]PYRIMIDIN-7(8H)-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5L2I _cell.length_a 101.749 _cell.length_b 101.749 _cell.length_c 60.778 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L2I _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H29 N7 O2' _chem_comp.formula_weight 447.533 _chem_comp.id LQQ _chem_comp.mon_nstd_flag . _chem_comp.name 6-ACETYL-8-CYCLOPENTYL-5-METHYL-2-[(5-PIPERAZIN-1-YLPYRIDIN-2-YL)AMINO]PYRIDO[2,3-D]PYRIMIDIN-7(8H)-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Palbociclib # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C02 LQQ doub 192 n n C02 C01 LQQ sing 193 n n C02 C03 LQQ sing 194 n n C01 H011 LQQ sing 195 n n C01 H012 LQQ sing 196 n n C01 H013 LQQ sing 197 n n C03 C04 LQQ doub 198 n y C03 C15 LQQ sing 199 n y C04 C05 LQQ sing 200 n n C04 C06 LQQ sing 201 n y C05 H051 LQQ sing 202 n n C05 H052 LQQ sing 203 n n C05 H053 LQQ sing 204 n n C06 C07 LQQ sing 205 n y C06 C09 LQQ doub 206 n y C07 N01 LQQ doub 207 n y C07 H1 LQQ sing 208 n n N01 C08 LQQ sing 209 n y C08 N02 LQQ doub 210 n y C08 N04 LQQ sing 211 n n N02 C09 LQQ sing 212 n y C09 N03 LQQ sing 213 n y N03 C10 LQQ sing 214 n n N03 C15 LQQ sing 215 n y C10 C11 LQQ sing 216 n n C10 C14 LQQ sing 217 n n C10 H10 LQQ sing 218 n n C11 C12 LQQ sing 219 n n C11 H111 LQQ sing 220 n n C11 H112 LQQ sing 221 n n C12 C13 LQQ sing 222 n n C12 H121 LQQ sing 223 n n C12 H122 LQQ sing 224 n n C13 C14 LQQ sing 225 n n C13 H131 LQQ sing 226 n n C13 H132 LQQ sing 227 n n C14 H141 LQQ sing 228 n n C14 H142 LQQ sing 229 n n C15 O02 LQQ doub 230 n n N04 C16 LQQ sing 231 n n N04 H04 LQQ sing 232 n n C16 N05 LQQ doub 233 n y C16 C20 LQQ sing 234 n y N05 C17 LQQ sing 235 n y C17 C18 LQQ doub 236 n y C17 H17 LQQ sing 237 n n C18 C19 LQQ sing 238 n y C18 N06 LQQ sing 239 n n C19 C20 LQQ doub 240 n y C19 H19 LQQ sing 241 n n C20 H20 LQQ sing 242 n n N06 C21 LQQ sing 243 n n N06 C24 LQQ sing 244 n n C21 C22 LQQ sing 245 n n C21 H211 LQQ sing 246 n n C21 H212 LQQ sing 247 n n C22 N07 LQQ sing 248 n n C22 H221 LQQ sing 249 n n C22 H222 LQQ sing 250 n n N07 C23 LQQ sing 251 n n N07 H07 LQQ sing 252 n n C23 C24 LQQ sing 253 n n C23 H231 LQQ sing 254 n n C23 H232 LQQ sing 255 n n C24 H241 LQQ sing 256 n n C24 H242 LQQ sing 257 n n # _atom_sites.entry_id 5L2I _atom_sites.fract_transf_matrix[1][1] 0.009828 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009828 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016453 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id LQQ _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 900 _pdbx_nonpoly_scheme.auth_seq_num 900 _pdbx_nonpoly_scheme.pdb_mon_id LQQ _pdbx_nonpoly_scheme.auth_mon_id API _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 LQQ . . . B 2 16.473 25.557 3.326 1 86.39 ? O01 LQQ 900 A 1 HETATM 2 C C02 LQQ . . . B 2 15.505 25.287 4.04 1 87.97 ? C02 LQQ 900 A 1 HETATM 3 C C01 LQQ . . . B 2 14.343 24.533 3.471 1 89.23 ? C01 LQQ 900 A 1 HETATM 4 C C03 LQQ . . . B 2 15.474 25.721 5.445 1 88.53 ? C03 LQQ 900 A 1 HETATM 5 C C04 LQQ . . . B 2 16.355 25.201 6.35 1 87.62 ? C04 LQQ 900 A 1 HETATM 6 C C05 LQQ . . . B 2 17.258 24.069 5.956 1 87.09 ? C05 LQQ 900 A 1 HETATM 7 C C06 LQQ . . . B 2 16.389 25.691 7.723 1 88.46 ? C06 LQQ 900 A 1 HETATM 8 C C07 LQQ . . . B 2 17.351 25.404 8.696 1 86.57 ? C07 LQQ 900 A 1 HETATM 9 N N01 LQQ . . . B 2 17.412 25.98 9.899 1 88.7 ? N01 LQQ 900 A 1 HETATM 10 C C08 LQQ . . . B 2 16.424 26.842 10.183 1 92.07 ? C08 LQQ 900 A 1 HETATM 11 N N02 LQQ . . . B 2 15.432 27.218 9.355 1 92.9 ? N02 LQQ 900 A 1 HETATM 12 C C09 LQQ . . . B 2 15.446 26.661 8.129 1 90.92 ? C09 LQQ 900 A 1 HETATM 13 N N03 LQQ . . . B 2 14.54 27.164 7.2 1 89.7 ? N03 LQQ 900 A 1 HETATM 14 C C10 LQQ . . . B 2 13.634 28.279 7.585 1 90.46 ? C10 LQQ 900 A 1 HETATM 15 C C11 LQQ . . . B 2 14.036 29.637 7.006 1 90.93 ? C11 LQQ 900 A 1 HETATM 16 C C12 LQQ . . . B 2 12.718 30.319 6.747 1 90.3 ? C12 LQQ 900 A 1 HETATM 17 C C13 LQQ . . . B 2 11.794 29.231 6.353 1 90.19 ? C13 LQQ 900 A 1 HETATM 18 C C14 LQQ . . . B 2 12.162 28.055 7.229 1 89.87 ? C14 LQQ 900 A 1 HETATM 19 C C15 LQQ . . . B 2 14.517 26.731 5.836 1 88.85 ? C15 LQQ 900 A 1 HETATM 20 O O02 LQQ . . . B 2 13.729 27.218 5.033 1 88.19 ? O02 LQQ 900 A 1 HETATM 21 N N04 LQQ . . . B 2 16.469 27.316 11.464 1 92.38 ? N04 LQQ 900 A 1 HETATM 22 C C16 LQQ . . . B 2 15.601 28.132 12.155 1 94.02 ? C16 LQQ 900 A 1 HETATM 23 N N05 LQQ . . . B 2 14.934 27.467 13.111 1 96.52 ? N05 LQQ 900 A 1 HETATM 24 C C17 LQQ . . . B 2 14.041 28.147 13.842 1 98.86 ? C17 LQQ 900 A 1 HETATM 25 C C18 LQQ . . . B 2 13.762 29.498 13.659 1 100.62 ? C18 LQQ 900 A 1 HETATM 26 C C19 LQQ . . . B 2 14.478 30.174 12.676 1 96.36 ? C19 LQQ 900 A 1 HETATM 27 C C20 LQQ . . . B 2 15.409 29.498 11.913 1 94.73 ? C20 LQQ 900 A 1 HETATM 28 N N06 LQQ . . . B 2 12.744 30.118 14.388 1 106.77 ? N06 LQQ 900 A 1 HETATM 29 C C21 LQQ . . . B 2 12.912 31.526 14.76 1 107.98 ? C21 LQQ 900 A 1 HETATM 30 C C22 LQQ . . . B 2 11.925 31.906 15.838 1 110.92 ? C22 LQQ 900 A 1 HETATM 31 N N07 LQQ . . . B 2 10.539 31.616 15.385 1 112.02 ? N07 LQQ 900 A 1 HETATM 32 C C23 LQQ . . . B 2 10.381 30.18 15.028 1 111.8 ? C23 LQQ 900 A 1 HETATM 33 C C24 LQQ . . . B 2 11.378 29.795 13.96 1 110.38 ? C24 LQQ 900 A 1 HETATM 34 H H011 LQQ . . . B 2 14.628 23.576 3.036 1 89.21 ? H011 LQQ 900 A 1 HETATM 35 H H012 LQQ . . . B 2 13.598 24.34 4.242 1 89.07 ? H012 LQQ 900 A 1 HETATM 36 H H013 LQQ . . . B 2 13.844 25.106 2.691 1 89.44 ? H013 LQQ 900 A 1 HETATM 37 H H051 LQQ . . . B 2 17.82 23.611 6.767 1 87.06 ? H051 LQQ 900 A 1 HETATM 38 H H052 LQQ . . . B 2 16.689 23.253 5.513 1 87.21 ? H052 LQQ 900 A 1 HETATM 39 H H053 LQQ . . . B 2 17.992 24.401 5.223 1 87.32 ? H053 LQQ 900 A 1 HETATM 40 H H1 LQQ . . . B 2 18.135 24.668 8.54 1 86.24 ? H1 LQQ 900 A 1 HETATM 41 H H10 LQQ . . . B 2 13.62 28.429 8.662 1 90.77 ? H10 LQQ 900 A 1 HETATM 42 H H111 LQQ . . . B 2 14.631 29.575 6.096 1 91.15 ? H111 LQQ 900 A 1 HETATM 43 H H112 LQQ . . . B 2 14.66 30.2 7.698 1 91.1 ? H112 LQQ 900 A 1 HETATM 44 H H121 LQQ . . . B 2 12.795 31.102 5.995 1 90.28 ? H121 LQQ 900 A 1 HETATM 45 H H122 LQQ . . . B 2 12.356 30.823 7.642 1 90.16 ? H122 LQQ 900 A 1 HETATM 46 H H131 LQQ . . . B 2 10.75 29.514 6.479 1 90.58 ? H131 LQQ 900 A 1 HETATM 47 H H132 LQQ . . . B 2 11.894 28.999 5.294 1 89.87 ? H132 LQQ 900 A 1 HETATM 48 H H141 LQQ . . . B 2 11.545 28.023 8.125 1 89.79 ? H141 LQQ 900 A 1 HETATM 49 H H142 LQQ . . . B 2 11.965 27.115 6.721 1 89.52 ? H142 LQQ 900 A 1 HETATM 50 H H04 LQQ . . . B 2 17.277 27.027 12.007 1 92.36 ? H04 LQQ 900 A 1 HETATM 51 H H17 LQQ . . . B 2 13.547 27.543 14.602 1 99.05 ? H17 LQQ 900 A 1 HETATM 52 H H19 LQQ . . . B 2 14.336 31.233 12.467 1 96.26 ? H19 LQQ 900 A 1 HETATM 53 H H20 LQQ . . . B 2 15.967 30.053 11.165 1 94.81 ? H20 LQQ 900 A 1 HETATM 54 H H211 LQQ . . . B 2 12.812 32.207 13.915 1 107.9 ? H211 LQQ 900 A 1 HETATM 55 H H212 LQQ . . . B 2 13.926 31.685 15.122 1 107.49 ? H212 LQQ 900 A 1 HETATM 56 H H221 LQQ . . . B 2 12.135 31.346 16.748 1 111.11 ? H221 LQQ 900 A 1 HETATM 57 H H222 LQQ . . . B 2 12.034 32.948 16.129 1 111.04 ? H222 LQQ 900 A 1 HETATM 58 H H07 LQQ . . . B 2 9.857 31.902 16.081 1 112.2 ? H07 LQQ 900 A 1 HETATM 59 H H231 LQQ . . . B 2 9.368 29.973 14.684 1 112.1 ? H231 LQQ 900 A 1 HETATM 60 H H232 LQQ . . . B 2 10.512 29.557 15.912 1 111.74 ? H232 LQQ 900 A 1 HETATM 61 H H241 LQQ . . . B 2 11.306 28.722 13.792 1 110.38 ? H241 LQQ 900 A 1 HETATM 62 H H242 LQQ . . . B 2 11.093 30.235 13.006 1 110.69 ? H242 LQQ 900 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 62 #