data_5L2K # _model_server_result.job_id xK0yd5zPnXGCfsCTgUDh9g _model_server_result.datetime_utc '2024-12-01 00:06:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l2k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":303}' # _entry.id 5L2K # _exptl.entry_id 5L2K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 715.096 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-O-[(2R,3R)-3-hydroxy-2-tetradecyldocosanoyl]-alpha-L-idopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5L2K _cell.length_a 174.998 _cell.length_b 174.998 _cell.length_c 170.869 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L2K _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 64 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 PISA hexadecameric 16 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 1 1 A,B,D,E,F,G,H,I,J,K,L,M,N,O,P,S,T,U,V,W 2 1,3,6,8 C,Q,R,X 2 2,4,5,7 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_544 -x+y,-x-1,z-1/3 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 87.499 -151.552714 -56.956333 3 'crystal symmetry operation' 4_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 87.499 -151.552714 0 4 'crystal symmetry operation' 6_554 x-y,x,z-1/3 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 0 -56.956333 5 'crystal symmetry operation' 8_545 x-y,-y-1,-z 1 0 0 0 -1 0 0 0 -1 87.499 -151.552714 0 6 'crystal symmetry operation' 9_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -56.956333 7 'crystal symmetry operation' 11_555 -x+y,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 12_544 x,x-y-1,-z-1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 87.499 -151.552714 -56.956333 # _struct_asym.details ? _struct_asym.entity_id 11 _struct_asym.id U _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 102 1_555 A SG CYS 165 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf2 A SG CYS 130 A CYS 131 1_555 A SG CYS 144 A CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 A SG CYS 205 A CYS 206 1_555 A SG CYS 260 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 25 B CYS 27 1_555 B SG CYS 80 B CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 C SG CYS 22 D CYS 23 1_555 C SG CYS 88 D CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 C SG CYS 133 D CYS 150 1_555 C SG CYS 183 D CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf7 C SG CYS 158 D CYS 175 1_555 D SG CYS 170 E CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf8 D SG CYS 23 E CYS 23 1_555 D SG CYS 91 E CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 D SG CYS 144 E CYS 157 1_555 D SG CYS 209 E CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A ND2 ASN 19 A ASN 20 1_555 F C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale2 A ND2 ASN 56 A ASN 57 1_555 E C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale3 A ND2 ASN 127 A ASN 128 1_555 G C1 NAG . A NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? # _chem_comp.formula 'C42 H82 O8' _chem_comp.formula_weight 715.096 _chem_comp.id 70E _chem_comp.mon_nstd_flag . _chem_comp.name 6-O-[(2R,3R)-3-hydroxy-2-tetradecyldocosanoyl]-alpha-L-idopyranose _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'C36 GLUCOSE MONOMYCOLATE;C36 GMM' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAV CAU 70E sing 122 n n CAV CAW 70E sing 123 n n CAU CAT 70E sing 124 n n CAX CAW 70E sing 125 n n CAX CAY 70E sing 126 n n CAT CAS 70E sing 127 n n CAZ CAY 70E sing 128 n n CAZ CBA 70E sing 129 n n CBD CBC 70E sing 130 n n CAS CAR 70E sing 131 n n CBC CBB 70E sing 132 n n CBA CBB 70E sing 133 n n CAR CAQ 70E sing 134 n n CAQ CAP 70E sing 135 n n OAM CAN 70E doub 136 n n CAP CAN 70E sing 137 n n CAP CBE 70E sing 138 n n CAN OAO 70E sing 139 n n O4 C4 70E sing 140 n n CBG CBE 70E sing 141 n n CBG CBH 70E sing 142 n n CBE OBF 70E sing 143 n n OAO CAG 70E sing 144 n n CBI CBH 70E sing 145 n n CBI CBJ 70E sing 146 n n CAG C5 70E sing 147 n n CBK CBJ 70E sing 148 n n CBK CBL 70E sing 149 n n C4 C3 70E sing 150 n n C4 C5 70E sing 151 n n O3 C3 70E sing 152 n n C3 C2 70E sing 153 n n C5 O5 70E sing 154 n n CBL CBM 70E sing 155 n n CBM CBN 70E sing 156 n n O5 C1 70E sing 157 n n C2 C1 70E sing 158 n n C2 O2 70E sing 159 n n C1 O1 70E sing 160 n n CBN CBO 70E sing 161 n n CBO CBP 70E sing 162 n n CBP CBQ 70E sing 163 n n CBQ CBR 70E sing 164 n n CBR CBS 70E sing 165 n n CBS CBT 70E sing 166 n n CBT CBU 70E sing 167 n n CBV CBU 70E sing 168 n n CBV CBW 70E sing 169 n n CBW CBX 70E sing 170 n n CBX CBY 70E sing 171 n n CAP H1 70E sing 172 n n CAQ H2 70E sing 173 n n CAQ H3 70E sing 174 n n CAR H4 70E sing 175 n n CAR H5 70E sing 176 n n CAS H6 70E sing 177 n n CAS H7 70E sing 178 n n CAT H8 70E sing 179 n n CAT H9 70E sing 180 n n CAU H10 70E sing 181 n n CAU H11 70E sing 182 n n CAV H12 70E sing 183 n n CAV H13 70E sing 184 n n CAW H14 70E sing 185 n n CAW H15 70E sing 186 n n CAX H16 70E sing 187 n n CAX H17 70E sing 188 n n CAY H18 70E sing 189 n n CAY H19 70E sing 190 n n CAZ H20 70E sing 191 n n CAZ H21 70E sing 192 n n CBA H22 70E sing 193 n n CBA H23 70E sing 194 n n CBB H24 70E sing 195 n n CBB H25 70E sing 196 n n CBC H26 70E sing 197 n n CBC H27 70E sing 198 n n CBD H28 70E sing 199 n n CBD H29 70E sing 200 n n CBD H30 70E sing 201 n n CBE H31 70E sing 202 n n CBG H32 70E sing 203 n n CBG H33 70E sing 204 n n CBH H34 70E sing 205 n n CBH H35 70E sing 206 n n CBI H36 70E sing 207 n n CBI H37 70E sing 208 n n CBJ H38 70E sing 209 n n CBJ H39 70E sing 210 n n CBK H40 70E sing 211 n n CBK H41 70E sing 212 n n CBL H42 70E sing 213 n n CBL H43 70E sing 214 n n CBM H44 70E sing 215 n n CBM H45 70E sing 216 n n CBN H46 70E sing 217 n n CBN H47 70E sing 218 n n CBO H48 70E sing 219 n n CBO H49 70E sing 220 n n CBP H50 70E sing 221 n n CBP H51 70E sing 222 n n CBQ H52 70E sing 223 n n CBQ H53 70E sing 224 n n CBR H54 70E sing 225 n n CBR H55 70E sing 226 n n CBS H56 70E sing 227 n n CBS H57 70E sing 228 n n CBT H58 70E sing 229 n n CBT H59 70E sing 230 n n CBU H60 70E sing 231 n n CBU H61 70E sing 232 n n CBV H62 70E sing 233 n n CBV H63 70E sing 234 n n CBW H64 70E sing 235 n n CBW H65 70E sing 236 n n CBX H66 70E sing 237 n n CBX H67 70E sing 238 n n CBY H68 70E sing 239 n n CBY H69 70E sing 240 n n CBY H70 70E sing 241 n n CAG H71 70E sing 242 n n CAG H72 70E sing 243 n n OBF H73 70E sing 244 n n C1 H74 70E sing 245 n n O1 H75 70E sing 246 n n C2 H76 70E sing 247 n n O2 H77 70E sing 248 n n C3 H78 70E sing 249 n n O3 H79 70E sing 250 n n C4 H80 70E sing 251 n n O4 H81 70E sing 252 n n C5 H82 70E sing 253 n n # _atom_sites.entry_id 5L2K _atom_sites.fract_transf_matrix[1][1] 0.005714 _atom_sites.fract_transf_matrix[1][2] 0.003299 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006598 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005852 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG A 1 401 1011 NAG NAG . F 5 NAG A 1 402 1001 NAG NAG . G 5 NAG A 1 403 1002 NAG NAG . H 6 SO4 A 1 404 2 SO4 SO4 . I 6 SO4 A 1 405 4 SO4 SO4 . J 6 SO4 A 1 406 1 SO4 SO4 . K 7 CL A 1 407 1 CL CL . L 7 CL A 1 408 2 CL CL . M 7 CL A 1 409 4 CL CL . N 8 NA A 1 410 2 NA NA . O 9 6UL A 1 411 1 6UL 6UL . P 7 CL B 1 201 3 CL CL . Q 6 SO4 D 1 301 3 SO4 SO4 . R 10 CS D 1 302 1 CS CS . S 6 SO4 E 1 301 2 SO4 SO4 . T 8 NA E 1 302 1 NA NA . U 11 70E E 1 303 1 70E GMM . V 12 HOH A 1 501 7 HOH HOH . V 12 HOH A 2 502 1 HOH HOH . W 12 HOH B 1 301 11 HOH HOH . W 12 HOH B 2 302 12 HOH HOH . W 12 HOH B 3 303 13 HOH HOH . X 12 HOH D 1 401 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAN 70E . . . U 11 28.322 -63.866 -5.981 1 54.81 ? CAN 70E 303 E 1 HETATM 2 C CAP 70E . . . U 11 29.649 -63.235 -5.514 1 55.03 ? CAP 70E 303 E 1 HETATM 3 C CAQ 70E . . . U 11 29.365 -62.109 -4.509 1 55.96 ? CAQ 70E 303 E 1 HETATM 4 C CAR 70E . . . U 11 29.279 -62.697 -3.095 1 56.8 ? CAR 70E 303 E 1 HETATM 5 C CAS 70E . . . U 11 30.324 -62.027 -2.205 1 57.55 ? CAS 70E 303 E 1 HETATM 6 C CAT 70E . . . U 11 31.011 -63.08 -1.338 1 58.57 ? CAT 70E 303 E 1 HETATM 7 C CAU 70E . . . U 11 32.49 -62.722 -1.184 1 60.02 ? CAU 70E 303 E 1 HETATM 8 C CAV 70E . . . U 11 33.316 -64.009 -1.189 1 62.04 ? CAV 70E 303 E 1 HETATM 9 C CAW 70E . . . U 11 34.788 -63.681 -0.919 1 63.31 ? CAW 70E 303 E 1 HETATM 10 C CAX 70E . . . U 11 35.686 -64.393 -1.935 1 63.94 ? CAX 70E 303 E 1 HETATM 11 C CAY 70E . . . U 11 36.265 -63.372 -2.912 1 65.12 ? CAY 70E 303 E 1 HETATM 12 C CAZ 70E . . . U 11 37.786 -63.317 -2.752 1 66.45 ? CAZ 70E 303 E 1 HETATM 13 C CBA 70E . . . U 11 38.457 -63.716 -4.072 1 67.64 ? CBA 70E 303 E 1 HETATM 14 C CBB 70E . . . U 11 38.863 -65.195 -4.037 1 68.37 ? CBB 70E 303 E 1 HETATM 15 C CBC 70E . . . U 11 40.364 -65.313 -3.771 1 68.94 ? CBC 70E 303 E 1 HETATM 16 C CBD 70E . . . U 11 40.677 -66.722 -3.266 1 69.31 ? CBD 70E 303 E 1 HETATM 17 C CBE 70E . . . U 11 30.555 -62.763 -6.683 1 55.05 ? CBE 70E 303 E 1 HETATM 18 C CBG 70E . . . U 11 32.017 -62.693 -6.208 1 55.09 ? CBG 70E 303 E 1 HETATM 19 C CBH 70E . . . U 11 32.937 -62.1 -7.279 1 55.07 ? CBH 70E 303 E 1 HETATM 20 C CBI 70E . . . U 11 34.385 -62.456 -6.926 1 55.65 ? CBI 70E 303 E 1 HETATM 21 C CBJ 70E . . . U 11 35.329 -61.907 -7.994 1 56.41 ? CBJ 70E 303 E 1 HETATM 22 C CBK 70E . . . U 11 36.373 -60.989 -7.35 1 57.02 ? CBK 70E 303 E 1 HETATM 23 C CBL 70E . . . U 11 37.704 -61.123 -8.099 1 57.85 ? CBL 70E 303 E 1 HETATM 24 C CBM 70E . . . U 11 37.979 -59.859 -8.922 1 57.86 ? CBM 70E 303 E 1 HETATM 25 C CBN 70E . . . U 11 39.096 -60.128 -9.937 1 57.6 ? CBN 70E 303 E 1 HETATM 26 C CBO 70E . . . U 11 38.978 -59.137 -11.1 1 57.99 ? CBO 70E 303 E 1 HETATM 27 C CBP 70E . . . U 11 40.224 -59.22 -11.992 1 58.44 ? CBP 70E 303 E 1 HETATM 28 C CBQ 70E . . . U 11 40.288 -57.995 -12.912 1 58.58 ? CBQ 70E 303 E 1 HETATM 29 C CBR 70E . . . U 11 40.024 -58.409 -14.364 1 58.75 ? CBR 70E 303 E 1 HETATM 30 C CBS 70E . . . U 11 38.908 -57.54 -14.949 1 58.72 ? CBS 70E 303 E 1 HETATM 31 C CBT 70E . . . U 11 39.477 -56.678 -16.077 1 59.31 ? CBT 70E 303 E 1 HETATM 32 C CBU 70E . . . U 11 38.366 -55.833 -16.704 1 60.05 ? CBU 70E 303 E 1 HETATM 33 C CBV 70E . . . U 11 38.555 -54.362 -16.322 1 61.6 ? CBV 70E 303 E 1 HETATM 34 C CBW 70E . . . U 11 37.362 -53.545 -16.822 1 63.68 ? CBW 70E 303 E 1 HETATM 35 C CBX 70E . . . U 11 37.832 -52.154 -17.255 1 64.96 ? CBX 70E 303 E 1 HETATM 36 C CBY 70E . . . U 11 36.893 -51.587 -18.325 1 65.11 ? CBY 70E 303 E 1 HETATM 37 O OAM 70E . . . U 11 27.508 -63.227 -6.652 1 54.74 ? OAM 70E 303 E 1 HETATM 38 O OAO 70E . . . U 11 28.15 -65.155 -5.563 1 55.38 ? OAO 70E 303 E 1 HETATM 39 C CAG 70E . . . U 11 26.885 -65.758 -5.893 1 56.81 ? CAG 70E 303 E 1 HETATM 40 O OBF 70E . . . U 11 30.481 -63.694 -7.774 1 55.43 ? OBF 70E 303 E 1 HETATM 41 C C1 70E . . . U 11 28.449 -68.693 -7.603 1 61.2 ? C1 70E 303 E 1 HETATM 42 O O1 70E . . . U 11 29.487 -68.559 -8.579 1 61.9 ? O1 70E 303 E 1 HETATM 43 C C2 70E . . . U 11 28.927 -69.547 -6.395 1 61 ? C2 70E 303 E 1 HETATM 44 O O2 70E . . . U 11 29.058 -70.927 -6.782 1 60.84 ? O2 70E 303 E 1 HETATM 45 C C3 70E . . . U 11 27.905 -69.483 -5.245 1 60.16 ? C3 70E 303 E 1 HETATM 46 O O3 70E . . . U 11 28.489 -70.128 -4.101 1 59.29 ? O3 70E 303 E 1 HETATM 47 C C4 70E . . . U 11 27.506 -68.028 -4.883 1 59.95 ? C4 70E 303 E 1 HETATM 48 O O4 70E . . . U 11 26.394 -68.089 -3.966 1 60.86 ? O4 70E 303 E 1 HETATM 49 C C5 70E . . . U 11 27.059 -67.256 -6.164 1 58.69 ? C5 70E 303 E 1 HETATM 50 O O5 70E . . . U 11 28.068 -67.344 -7.195 1 59.86 ? O5 70E 303 E 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 50 #