data_5L2K # _model_server_result.job_id 6282p5MELnQ1SLR1Ciq6Qw _model_server_result.datetime_utc '2024-12-01 00:14:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l2k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":411}' # _entry.id 5L2K # _exptl.entry_id 5L2K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 593.062 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRACOSYL PALMITATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5L2K _cell.length_a 174.998 _cell.length_b 174.998 _cell.length_c 170.869 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L2K _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 64 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 PISA hexadecameric 16 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 1 1 A,B,D,E,F,G,H,I,J,K,L,M,N,O,P,S,T,U,V,W 2 1,3,6,8 C,Q,R,X 2 2,4,5,7 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_544 -x+y,-x-1,z-1/3 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 87.499 -151.552714 -56.956333 3 'crystal symmetry operation' 4_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 87.499 -151.552714 0 4 'crystal symmetry operation' 6_554 x-y,x,z-1/3 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 0 -56.956333 5 'crystal symmetry operation' 8_545 x-y,-y-1,-z 1 0 0 0 -1 0 0 0 -1 87.499 -151.552714 0 6 'crystal symmetry operation' 9_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -56.956333 7 'crystal symmetry operation' 11_555 -x+y,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 12_544 x,x-y-1,-z-1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 87.499 -151.552714 -56.956333 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 102 1_555 A SG CYS 165 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf2 A SG CYS 130 A CYS 131 1_555 A SG CYS 144 A CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 A SG CYS 205 A CYS 206 1_555 A SG CYS 260 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 25 B CYS 27 1_555 B SG CYS 80 B CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 C SG CYS 22 D CYS 23 1_555 C SG CYS 88 D CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 C SG CYS 133 D CYS 150 1_555 C SG CYS 183 D CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf7 C SG CYS 158 D CYS 175 1_555 D SG CYS 170 E CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf8 D SG CYS 23 E CYS 23 1_555 D SG CYS 91 E CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 D SG CYS 144 E CYS 157 1_555 D SG CYS 209 E CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A ND2 ASN 19 A ASN 20 1_555 F C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale2 A ND2 ASN 56 A ASN 57 1_555 E C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale3 A ND2 ASN 127 A ASN 128 1_555 G C1 NAG . A NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? # _chem_comp.formula 'C40 H80 O2' _chem_comp.formula_weight 593.062 _chem_comp.id 6UL _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRACOSYL PALMITATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBP CBN 6UL sing 1 n n CBP HBP1 6UL sing 2 n n CBP HBP2 6UL sing 3 n n CBP HBP3 6UL sing 4 n n CBN CAX 6UL sing 5 n n CBN HBN1 6UL sing 6 n n CBN HBN2 6UL sing 7 n n CAX CAY 6UL sing 8 n n CAX HAX1 6UL sing 9 n n CAX HAX2 6UL sing 10 n n CAY CAZ 6UL sing 11 n n CAY HAY1 6UL sing 12 n n CAY HAY2 6UL sing 13 n n CAZ CBA 6UL sing 14 n n CAZ HAZ1 6UL sing 15 n n CAZ HAZ2 6UL sing 16 n n CBA CBB 6UL sing 17 n n CBA HBA1 6UL sing 18 n n CBA HBA2 6UL sing 19 n n CBB CBC 6UL sing 20 n n CBB HBB1 6UL sing 21 n n CBB HBB2 6UL sing 22 n n CBC CBD 6UL sing 23 n n CBC HBC1 6UL sing 24 n n CBC HBC2 6UL sing 25 n n CBD CBE 6UL sing 26 n n CBD HBD1 6UL sing 27 n n CBD HBD2 6UL sing 28 n n CBE CBF 6UL sing 29 n n CBE HBE1 6UL sing 30 n n CBE HBE2 6UL sing 31 n n CBF CBG 6UL sing 32 n n CBF HBF1 6UL sing 33 n n CBF HBF2 6UL sing 34 n n CBG CBH 6UL sing 35 n n CBG HBG1 6UL sing 36 n n CBG HBG2 6UL sing 37 n n CBH CBI 6UL sing 38 n n CBH HBH1 6UL sing 39 n n CBH HBH2 6UL sing 40 n n CBI CBJ 6UL sing 41 n n CBI HBI1 6UL sing 42 n n CBI HBI2 6UL sing 43 n n CBJ CBK 6UL sing 44 n n CBJ HBJ1 6UL sing 45 n n CBJ HBJ2 6UL sing 46 n n CBK CBL 6UL sing 47 n n CBK HBK1 6UL sing 48 n n CBK HBK2 6UL sing 49 n n CBL CBM 6UL sing 50 n n CBL HBL1 6UL sing 51 n n CBL HBL2 6UL sing 52 n n CBM CAW 6UL sing 53 n n CBM HBM1 6UL sing 54 n n CBM HBM2 6UL sing 55 n n CAW CAV 6UL sing 56 n n CAW HAW1 6UL sing 57 n n CAW HAW2 6UL sing 58 n n CAV CAU 6UL sing 59 n n CAV HAV1 6UL sing 60 n n CAV HAV2 6UL sing 61 n n CAU CAT 6UL sing 62 n n CAU HAU1 6UL sing 63 n n CAU HAU2 6UL sing 64 n n CAT CAS 6UL sing 65 n n CAT HAT1 6UL sing 66 n n CAT HAT2 6UL sing 67 n n CAS CAR 6UL sing 68 n n CAS HAS1 6UL sing 69 n n CAS HAS2 6UL sing 70 n n CAR OAQ 6UL sing 71 n n CAR HAR1 6UL sing 72 n n CAR HAR2 6UL sing 73 n n OAQ CAP 6UL sing 74 n n CAP OBO 6UL doub 75 n n CAP CAO 6UL sing 76 n n CAO CAN 6UL sing 77 n n CAO HAO1 6UL sing 78 n n CAO HAO2 6UL sing 79 n n CAN CAM 6UL sing 80 n n CAN HAN1 6UL sing 81 n n CAN HAN2 6UL sing 82 n n CAM CAL 6UL sing 83 n n CAM HAM1 6UL sing 84 n n CAM HAM2 6UL sing 85 n n CAL CAK 6UL sing 86 n n CAL HAL1 6UL sing 87 n n CAL HAL2 6UL sing 88 n n CAK CAJ 6UL sing 89 n n CAK HAK1 6UL sing 90 n n CAK HAK2 6UL sing 91 n n CAJ CAI 6UL sing 92 n n CAJ HAJ1 6UL sing 93 n n CAJ HAJ2 6UL sing 94 n n CAI CAH 6UL sing 95 n n CAI HAI1 6UL sing 96 n n CAI HAI2 6UL sing 97 n n CAH CAG 6UL sing 98 n n CAH HAH1 6UL sing 99 n n CAH HAH2 6UL sing 100 n n CAG CAF 6UL sing 101 n n CAG HAG1 6UL sing 102 n n CAG HAG2 6UL sing 103 n n CAF CAE 6UL sing 104 n n CAF HAF1 6UL sing 105 n n CAF HAF2 6UL sing 106 n n CAE CAD 6UL sing 107 n n CAE HAE1 6UL sing 108 n n CAE HAE2 6UL sing 109 n n CAD CAC 6UL sing 110 n n CAD HAD1 6UL sing 111 n n CAD HAD2 6UL sing 112 n n CAC CAB 6UL sing 113 n n CAC HAC1 6UL sing 114 n n CAC HAC2 6UL sing 115 n n CAB CAA 6UL sing 116 n n CAB HAB1 6UL sing 117 n n CAB HAB2 6UL sing 118 n n CAA HAA1 6UL sing 119 n n CAA HAA2 6UL sing 120 n n CAA HAA3 6UL sing 121 n n # _atom_sites.entry_id 5L2K _atom_sites.fract_transf_matrix[1][1] 0.005714 _atom_sites.fract_transf_matrix[1][2] 0.003299 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006598 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005852 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG A 1 401 1011 NAG NAG . F 5 NAG A 1 402 1001 NAG NAG . G 5 NAG A 1 403 1002 NAG NAG . H 6 SO4 A 1 404 2 SO4 SO4 . I 6 SO4 A 1 405 4 SO4 SO4 . J 6 SO4 A 1 406 1 SO4 SO4 . K 7 CL A 1 407 1 CL CL . L 7 CL A 1 408 2 CL CL . M 7 CL A 1 409 4 CL CL . N 8 NA A 1 410 2 NA NA . O 9 6UL A 1 411 1 6UL 6UL . P 7 CL B 1 201 3 CL CL . Q 6 SO4 D 1 301 3 SO4 SO4 . R 10 CS D 1 302 1 CS CS . S 6 SO4 E 1 301 2 SO4 SO4 . T 8 NA E 1 302 1 NA NA . U 11 70E E 1 303 1 70E GMM . V 12 HOH A 1 501 7 HOH HOH . V 12 HOH A 2 502 1 HOH HOH . W 12 HOH B 1 301 11 HOH HOH . W 12 HOH B 2 302 12 HOH HOH . W 12 HOH B 3 303 13 HOH HOH . X 12 HOH D 1 401 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBC 6UL . . . O 9 36.96 -51.113 -13.651 1 56.33 ? CBC 6UL 411 A 1 HETATM 2 C CBD 6UL . . . O 9 36.629 -50.396 -12.336 1 56.71 ? CBD 6UL 411 A 1 HETATM 3 C CBE 6UL . . . O 9 37.83 -50.447 -11.379 1 57.18 ? CBE 6UL 411 A 1 HETATM 4 C CBF 6UL . . . O 9 37.341 -50.495 -9.922 1 57.41 ? CBF 6UL 411 A 1 HETATM 5 C CBG 6UL . . . O 9 37.941 -51.708 -9.201 1 57.3 ? CBG 6UL 411 A 1 HETATM 6 C CBH 6UL . . . O 9 37.039 -52.149 -8.04 1 57.07 ? CBH 6UL 411 A 1 HETATM 7 C CBI 6UL . . . O 9 37.872 -52.948 -7.026 1 57.18 ? CBI 6UL 411 A 1 HETATM 8 C CBJ 6UL . . . O 9 37.39 -54.405 -6.956 1 56.94 ? CBJ 6UL 411 A 1 HETATM 9 C CBK 6UL . . . O 9 38.489 -55.349 -7.461 1 56.34 ? CBK 6UL 411 A 1 HETATM 10 C CBL 6UL . . . O 9 38.846 -56.373 -6.378 1 55.41 ? CBL 6UL 411 A 1 HETATM 11 C CBM 6UL . . . O 9 39.996 -57.275 -6.857 1 54.3 ? CBM 6UL 411 A 1 HETATM 12 C CAW 6UL . . . O 9 40.861 -57.731 -5.673 1 54 ? CAW 6UL 411 A 1 HETATM 13 C CAV 6UL . . . O 9 40.346 -59.069 -5.117 1 54.79 ? CAV 6UL 411 A 1 HETATM 14 C CAU 6UL . . . O 9 41.307 -59.614 -4.053 1 56.37 ? CAU 6UL 411 A 1 HETATM 15 C CAT 6UL . . . O 9 40.733 -59.395 -2.646 1 57.95 ? CAT 6UL 411 A 1 HETATM 16 C CAS 6UL . . . O 9 40.747 -60.708 -1.857 1 60.21 ? CAS 6UL 411 A 1 HETATM 17 C CAR 6UL . . . O 9 40.752 -60.4 -0.355 1 63.12 ? CAR 6UL 411 A 1 HETATM 18 O OAQ 6UL . . . O 9 40.965 -61.608 0.401 1 65.81 ? OAQ 6UL 411 A 1 HETATM 19 C CAP 6UL . . . O 9 41.366 -61.403 1.699 1 67.4 ? CAP 6UL 411 A 1 HETATM 20 O OBO 6UL . . . O 9 42.482 -60.973 2.011 1 67.81 ? OBO 6UL 411 A 1 HETATM 21 C CAO 6UL . . . O 9 40.338 -61.86 2.767 1 67.73 ? CAO 6UL 411 A 1 HETATM 22 C CAN 6UL . . . O 9 40.677 -61.377 4.193 1 67.97 ? CAN 6UL 411 A 1 HETATM 23 C CAM 6UL . . . O 9 40.269 -62.441 5.224 1 68.14 ? CAM 6UL 411 A 1 HETATM 24 C CAL 6UL . . . O 9 39.119 -61.95 6.112 1 68.48 ? CAL 6UL 411 A 1 HETATM 25 C CAK 6UL . . . O 9 38.639 -63.092 7.022 1 67.87 ? CAK 6UL 411 A 1 HETATM 26 C CAJ 6UL . . . O 9 37.11 -63.221 6.961 1 66.96 ? CAJ 6UL 411 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 26 #