data_5L2S # _model_server_result.job_id LaEJ_tjpDfWJa7b0ibrabA _model_server_result.datetime_utc '2024-11-29 19:50:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l2s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":900}' # _entry.id 5L2S # _exptl.entry_id 5L2S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.593 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-{5-[(4-ethylpiperazin-1-yl)methyl]pyridin-2-yl}-5-fluoro-4-[4-fluoro-2-methyl-1-(propan-2-yl)-1H-benzimidazol-6-yl]py rimidin-2-amine' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5L2S _cell.length_a 102.17 _cell.length_b 102.17 _cell.length_c 59.83 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L2S _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H32 F2 N8' _chem_comp.formula_weight 506.593 _chem_comp.id 6ZV _chem_comp.mon_nstd_flag . _chem_comp.name 'N-{5-[(4-ethylpiperazin-1-yl)methyl]pyridin-2-yl}-5-fluoro-4-[4-fluoro-2-methyl-1-(propan-2-yl)-1H-benzimidazol-6-yl]py rimidin-2-amine' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Abemaciclib # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C32 N2 6ZV sing 1 n n C32 C31 6ZV sing 2 n n N2 C34 6ZV sing 3 n n N2 C1 6ZV sing 4 n n C31 N30 6ZV sing 5 n n C34 C35 6ZV sing 6 n n N30 C35 6ZV sing 7 n n N30 C14 6ZV sing 8 n n C1 C3 6ZV sing 9 n n C12 N 6ZV doub 10 n y C12 C11 6ZV sing 11 n y N C8 6ZV sing 12 n y C14 C11 6ZV sing 13 n n C11 C10 6ZV doub 14 n y C8 N7 6ZV sing 15 n n C8 C 6ZV doub 16 n y N7 C2 6ZV sing 17 n n C10 C 6ZV sing 18 n y N1 C2 6ZV doub 19 n y N1 C6 6ZV sing 20 n y C2 N3 6ZV sing 21 n y C6 C5 6ZV doub 22 n y N3 C4 6ZV doub 23 n y C4 C5 6ZV sing 24 n y C4 C16 6ZV sing 25 n n C5 F15 6ZV sing 26 n n C28 C26 6ZV sing 27 n n C27 C26 6ZV sing 28 n n C17 C16 6ZV doub 29 n y C17 C18 6ZV sing 30 n y C16 C21 6ZV sing 31 n y C26 N22 6ZV sing 32 n n C18 N22 6ZV sing 33 n y C18 C19 6ZV doub 34 n y C21 C20 6ZV doub 35 n y N22 C23 6ZV sing 36 n y C20 C19 6ZV sing 37 n y C20 F29 6ZV sing 38 n n C19 N24 6ZV sing 39 n y C23 N24 6ZV doub 40 n y C23 C25 6ZV sing 41 n n C1 H69 6ZV sing 42 n n C1 H77 6ZV sing 43 n n C3 H78 6ZV sing 44 n n C3 H79 6ZV sing 45 n n C3 H76 6ZV sing 46 n n C6 H42 6ZV sing 47 n n C10 H41 6ZV sing 48 n n C H68 6ZV sing 49 n n C17 H39 6ZV sing 50 n n C21 H40 6ZV sing 51 n n C12 H38 6ZV sing 52 n n C31 H44 6ZV sing 53 n n C31 H43 6ZV sing 54 n n C35 H65 6ZV sing 55 n n C35 H66 6ZV sing 56 n n C32 H71 6ZV sing 57 n n C32 H72 6ZV sing 58 n n C34 H74 6ZV sing 59 n n C34 H73 6ZV sing 60 n n C25 H51 6ZV sing 61 n n C25 H52 6ZV sing 62 n n C25 H53 6ZV sing 63 n n C27 H57 6ZV sing 64 n n C27 H58 6ZV sing 65 n n C27 H59 6ZV sing 66 n n C28 H62 6ZV sing 67 n n C28 H60 6ZV sing 68 n n C28 H61 6ZV sing 69 n n C14 H63 6ZV sing 70 n n C14 H64 6ZV sing 71 n n C26 H67 6ZV sing 72 n n N7 H70 6ZV sing 73 n n # _atom_sites.entry_id 5L2S _atom_sites.fract_transf_matrix[1][1] 0.009788 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009788 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016714 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6ZV A 1 900 900 6ZV API . C 3 HOH A 1 1001 4 HOH HOH . C 3 HOH A 2 1002 12 HOH HOH . C 3 HOH A 3 1003 15 HOH HOH . C 3 HOH A 4 1004 3 HOH HOH . C 3 HOH A 5 1005 18 HOH HOH . C 3 HOH A 6 1006 9 HOH HOH . C 3 HOH A 7 1007 14 HOH HOH . C 3 HOH A 8 1008 2 HOH HOH . C 3 HOH A 9 1009 5 HOH HOH . C 3 HOH A 10 1010 10 HOH HOH . C 3 HOH A 11 1011 13 HOH HOH . C 3 HOH A 12 1012 20 HOH HOH . C 3 HOH A 13 1013 21 HOH HOH . C 3 HOH A 14 1014 16 HOH HOH . C 3 HOH A 15 1015 1 HOH HOH . C 3 HOH A 16 1016 8 HOH HOH . C 3 HOH A 17 1017 19 HOH HOH . C 3 HOH A 18 1018 6 HOH HOH . C 3 HOH A 19 1019 11 HOH HOH . C 3 HOH A 20 1020 7 HOH HOH . C 3 HOH A 21 1021 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 6ZV . . . B 2 19.249 42.926 -12.99 1 78.96 ? C1 6ZV 900 A 1 HETATM 2 C C2 6ZV . . . B 2 24.431 34.548 -9.469 1 48.95 ? C2 6ZV 900 A 1 HETATM 3 C C3 6ZV . . . B 2 19.881 44.214 -12.55 1 79.37 ? C3 6ZV 900 A 1 HETATM 4 C C4 6ZV . . . B 2 24.862 34.876 -7.226 1 46.91 ? C4 6ZV 900 A 1 HETATM 5 C C5 6ZV . . . B 2 25.546 33.61 -7.195 1 46.29 ? C5 6ZV 900 A 1 HETATM 6 C C6 6ZV . . . B 2 25.617 32.918 -8.412 1 46.3 ? C6 6ZV 900 A 1 HETATM 7 N N2 6ZV . . . B 2 20.096 42.138 -13.919 1 76.83 ? N2 6ZV 900 A 1 HETATM 8 C C10 6ZV . . . B 2 20.851 37.047 -10.424 1 58.29 ? C10 6ZV 900 A 1 HETATM 9 C C 6ZV . . . B 2 21.889 36.243 -9.995 1 56.8 ? C 6ZV 900 A 1 HETATM 10 C C17 6ZV . . . B 2 23.75 36.809 -6.086 1 48.44 ? C17 6ZV 900 A 1 HETATM 11 C C21 6ZV . . . B 2 25.491 35.654 -4.914 1 47.86 ? C21 6ZV 900 A 1 HETATM 12 C C12 6ZV . . . B 2 21.606 36.789 -12.646 1 60.21 ? C12 6ZV 900 A 1 HETATM 13 C C16 6ZV . . . B 2 24.708 35.793 -6.063 1 47.3 ? C16 6ZV 900 A 1 HETATM 14 C C11 6ZV . . . B 2 20.692 37.347 -11.768 1 61.53 ? C11 6ZV 900 A 1 HETATM 15 C C19 6ZV . . . B 2 24.366 37.504 -3.812 1 50.52 ? C19 6ZV 900 A 1 HETATM 16 C C18 6ZV . . . B 2 23.61 37.638 -4.978 1 50.24 ? C18 6ZV 900 A 1 HETATM 17 C C20 6ZV . . . B 2 25.301 36.472 -3.828 1 50.42 ? C20 6ZV 900 A 1 HETATM 18 C C8 6ZV . . . B 2 22.771 35.733 -10.962 1 55.86 ? C8 6ZV 900 A 1 HETATM 19 C C23 6ZV . . . B 2 23.068 39.169 -3.465 1 53.74 ? C23 6ZV 900 A 1 HETATM 20 C C31 6ZV . . . B 2 18.87 40.011 -13.742 1 70.65 ? C31 6ZV 900 A 1 HETATM 21 C C35 6ZV . . . B 2 20.766 40.371 -12.331 1 74.03 ? C35 6ZV 900 A 1 HETATM 22 C C32 6ZV . . . B 2 19.326 41.126 -14.66 1 73.85 ? C32 6ZV 900 A 1 HETATM 23 C C34 6ZV . . . B 2 21.232 41.502 -13.235 1 75.53 ? C34 6ZV 900 A 1 HETATM 24 C C25 6ZV . . . B 2 22.372 40.315 -2.831 1 54.98 ? C25 6ZV 900 A 1 HETATM 25 C C27 6ZV . . . B 2 20.807 38.695 -6.272 1 48.66 ? C27 6ZV 900 A 1 HETATM 26 C C28 6ZV . . . B 2 22.88 40.014 -6.867 1 50.81 ? C28 6ZV 900 A 1 HETATM 27 C C14 6ZV . . . B 2 19.577 38.253 -12.245 1 65.67 ? C14 6ZV 900 A 1 HETATM 28 C C26 6ZV . . . B 2 21.983 39.502 -5.756 1 49.85 ? C26 6ZV 900 A 1 HETATM 29 N N 6ZV . . . B 2 22.623 35.996 -12.274 1 58.55 ? N 6ZV 900 A 1 HETATM 30 N N1 6ZV . . . B 2 25.073 33.372 -9.55 1 48.02 ? N1 6ZV 900 A 1 HETATM 31 N N24 6ZV . . . B 2 24.009 38.469 -2.887 1 52.99 ? N24 6ZV 900 A 1 HETATM 32 N N3 6ZV . . . B 2 24.303 35.319 -8.371 1 47.01 ? N3 6ZV 900 A 1 HETATM 33 N N22 6ZV . . . B 2 22.756 38.737 -4.742 1 51.61 ? N22 6ZV 900 A 1 HETATM 34 N N30 6ZV . . . B 2 20.019 39.363 -13.102 1 70.4 ? N30 6ZV 900 A 1 HETATM 35 N N7 6ZV . . . B 2 23.895 34.969 -10.656 1 51.69 ? N7 6ZV 900 A 1 HETATM 36 F F29 6ZV . . . B 2 26.033 36.259 -2.713 1 51.74 ? F29 6ZV 900 A 1 HETATM 37 F F15 6ZV . . . B 2 26.034 33.015 -6.081 1 45.15 ? F15 6ZV 900 A 1 HETATM 38 H H69 6ZV . . . B 2 18.352 43.199 -13.544 1 79.34 ? H69 6ZV 900 A 1 HETATM 39 H H77 6ZV . . . B 2 18.859 42.412 -12.113 1 78.97 ? H77 6ZV 900 A 1 HETATM 40 H H78 6ZV . . . B 2 20.728 44.508 -13.168 1 79.33 ? H78 6ZV 900 A 1 HETATM 41 H H79 6ZV . . . B 2 19.162 45.031 -12.595 1 79.5 ? H79 6ZV 900 A 1 HETATM 42 H H76 6ZV . . . B 2 20.235 44.188 -11.521 1 79.37 ? H76 6ZV 900 A 1 HETATM 43 H H42 6ZV . . . B 2 26.084 31.94 -8.492 1 46.01 ? H42 6ZV 900 A 1 HETATM 44 H H41 6ZV . . . B 2 20.157 37.439 -9.682 1 58.54 ? H41 6ZV 900 A 1 HETATM 45 H H68 6ZV . . . B 2 21.971 36.053 -8.927 1 56.77 ? H68 6ZV 900 A 1 HETATM 46 H H39 6ZV . . . B 2 23.093 36.968 -6.939 1 48.56 ? H39 6ZV 900 A 1 HETATM 47 H H40 6ZV . . . B 2 26.301 34.932 -4.834 1 47.81 ? H40 6ZV 900 A 1 HETATM 48 H H38 6ZV . . . B 2 21.55 36.977 -13.718 1 60.42 ? H38 6ZV 900 A 1 HETATM 49 H H44 6ZV . . . B 2 18.359 39.275 -14.359 1 70.67 ? H44 6ZV 900 A 1 HETATM 50 H H43 6ZV . . . B 2 18.096 40.358 -13.059 1 70.39 ? H43 6ZV 900 A 1 HETATM 51 H H65 6ZV . . . B 2 21.656 39.896 -11.922 1 74.11 ? H65 6ZV 900 A 1 HETATM 52 H H66 6ZV . . . B 2 20.259 40.743 -11.442 1 74.07 ? H66 6ZV 900 A 1 HETATM 53 H H71 6ZV . . . B 2 19.954 40.742 -15.462 1 74.04 ? H71 6ZV 900 A 1 HETATM 54 H H72 6ZV . . . B 2 18.483 41.585 -15.174 1 74.02 ? H72 6ZV 900 A 1 HETATM 55 H H74 6ZV . . . B 2 21.929 41.139 -13.99 1 75.54 ? H74 6ZV 900 A 1 HETATM 56 H H73 6ZV . . . B 2 21.802 42.247 -12.683 1 75.59 ? H73 6ZV 900 A 1 HETATM 57 H H51 6ZV . . . B 2 22.47 41.22 -3.426 1 54.53 ? H51 6ZV 900 A 1 HETATM 58 H H52 6ZV . . . B 2 21.311 40.121 -2.676 1 55.22 ? H52 6ZV 900 A 1 HETATM 59 H H53 6ZV . . . B 2 22.794 40.537 -1.852 1 55.03 ? H53 6ZV 900 A 1 HETATM 60 H H57 6ZV . . . B 2 21.106 37.886 -6.936 1 49.1 ? H57 6ZV 900 A 1 HETATM 61 H H58 6ZV . . . B 2 20.12 39.315 -6.846 1 48.78 ? H58 6ZV 900 A 1 HETATM 62 H H59 6ZV . . . B 2 20.221 38.25 -5.469 1 48.05 ? H59 6ZV 900 A 1 HETATM 63 H H62 6ZV . . . B 2 22.335 40.646 -7.567 1 50.82 ? H62 6ZV 900 A 1 HETATM 64 H H60 6ZV . . . B 2 23.309 39.21 -7.461 1 51.28 ? H60 6ZV 900 A 1 HETATM 65 H H61 6ZV . . . B 2 23.714 40.609 -6.5 1 50.7 ? H61 6ZV 900 A 1 HETATM 66 H H63 6ZV . . . B 2 18.887 37.626 -12.808 1 65.7 ? H63 6ZV 900 A 1 HETATM 67 H H64 6ZV . . . B 2 18.997 38.593 -11.389 1 65.65 ? H64 6ZV 900 A 1 HETATM 68 H H67 6ZV . . . B 2 21.547 40.38 -5.284 1 50.37 ? H67 6ZV 900 A 1 HETATM 69 H H70 6ZV . . . B 2 24.43 34.675 -11.468 1 51.81 ? H70 6ZV 900 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 69 #