data_5L2T # _model_server_result.job_id GN2nD5-LRUcec7ivuH3jRw _model_server_result.datetime_utc '2024-11-29 09:47:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l2t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":900}' # _entry.id 5L2T # _exptl.entry_id 5L2T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 434.537 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-cyclopentyl-N,N-dimethyl-2-{[5-(piperazin-1-yl)pyridin-2-yl]amino}-7H-pyrrolo[2,3-d]pyrimidine-6-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5L2T _cell.length_a 101.227 _cell.length_b 101.227 _cell.length_c 60.314 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L2T _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H30 N8 O' _chem_comp.formula_weight 434.537 _chem_comp.id 6ZZ _chem_comp.mon_nstd_flag . _chem_comp.name 7-cyclopentyl-N,N-dimethyl-2-{[5-(piperazin-1-yl)pyridin-2-yl]amino}-7H-pyrrolo[2,3-d]pyrimidine-6-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Ribociclib # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C32 C31 6ZZ sing 1 n n C32 N27 6ZZ sing 2 n n C31 N30 6ZZ sing 3 n n C20 N 6ZZ doub 4 n y C20 C19 6ZZ sing 5 n y N30 C29 6ZZ sing 6 n n N C16 6ZZ sing 7 n y N27 C19 6ZZ sing 8 n n N27 C28 6ZZ sing 9 n n C19 C18 6ZZ doub 10 n y C16 N15 6ZZ sing 11 n n C16 C 6ZZ doub 12 n y C28 C29 6ZZ sing 13 n n N15 C2 6ZZ sing 14 n n C18 C 6ZZ sing 15 n y N1 C2 6ZZ doub 16 n y N1 C4 6ZZ sing 17 n y C2 N3 6ZZ sing 18 n y C4 C5 6ZZ doub 19 n y N3 C6 6ZZ doub 20 n y C6 C5 6ZZ sing 21 n y C6 N7 6ZZ sing 22 n y C5 C9 6ZZ sing 23 n y C25 C26 6ZZ sing 24 n n C25 C24 6ZZ sing 25 n n C26 C22 6ZZ sing 26 n n N7 C22 6ZZ sing 27 n n N7 C8 6ZZ sing 28 n y C24 C23 6ZZ sing 29 n n C9 C8 6ZZ doub 30 n y C23 C22 6ZZ sing 31 n n C8 C10 6ZZ sing 32 n n C14 N11 6ZZ sing 33 n n C10 N11 6ZZ sing 34 n n C10 O12 6ZZ doub 35 n n N11 C13 6ZZ sing 36 n n C4 H35 6ZZ sing 37 n n C20 H33 6ZZ sing 38 n n C9 H34 6ZZ sing 39 n n C18 H36 6ZZ sing 40 n n C24 H38 6ZZ sing 41 n n C24 H37 6ZZ sing 42 n n C25 H39 6ZZ sing 43 n n C25 H40 6ZZ sing 44 n n C23 H42 6ZZ sing 45 n n C23 H41 6ZZ sing 46 n n C26 H43 6ZZ sing 47 n n C26 H44 6ZZ sing 48 n n C28 H45 6ZZ sing 49 n n C28 H46 6ZZ sing 50 n n C32 H48 6ZZ sing 51 n n C32 H47 6ZZ sing 52 n n C29 H49 6ZZ sing 53 n n C29 H50 6ZZ sing 54 n n C31 H51 6ZZ sing 55 n n C31 H52 6ZZ sing 56 n n C22 H53 6ZZ sing 57 n n C13 H55 6ZZ sing 58 n n C13 H56 6ZZ sing 59 n n C13 H54 6ZZ sing 60 n n C14 H57 6ZZ sing 61 n n C14 H58 6ZZ sing 62 n n C14 H59 6ZZ sing 63 n n C H60 6ZZ sing 64 n n N15 H61 6ZZ sing 65 n n N30 H62 6ZZ sing 66 n n # _atom_sites.entry_id 5L2T _atom_sites.fract_transf_matrix[1][1] 0.009879 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009879 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01658 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6ZZ A 1 900 900 6ZZ API . C 3 HOH A 1 1001 2 HOH HOH . C 3 HOH A 2 1002 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 6ZZ . . . B 2 24.4 34.251 -8.961 1 66.53 ? C2 6ZZ 900 A 1 HETATM 2 C C4 6ZZ . . . B 2 25.796 32.765 -7.959 1 61.62 ? C4 6ZZ 900 A 1 HETATM 3 C C5 6ZZ . . . B 2 25.705 33.394 -6.724 1 62.88 ? C5 6ZZ 900 A 1 HETATM 4 C C6 6ZZ . . . B 2 24.881 34.537 -6.775 1 61.64 ? C6 6ZZ 900 A 1 HETATM 5 C C20 6ZZ . . . B 2 21.831 37.04 -11.757 1 80.07 ? C20 6ZZ 900 A 1 HETATM 6 N N 6ZZ . . . B 2 22.718 36.063 -11.516 1 78.42 ? N 6ZZ 900 A 1 HETATM 7 C C9 6ZZ . . . B 2 26.147 33.265 -5.393 1 60.57 ? C9 6ZZ 900 A 1 HETATM 8 C C18 6ZZ . . . B 2 20.823 36.797 -9.621 1 79.85 ? C18 6ZZ 900 A 1 HETATM 9 C C19 6ZZ . . . B 2 20.863 37.456 -10.842 1 81.74 ? C19 6ZZ 900 A 1 HETATM 10 C C8 6ZZ . . . B 2 25.616 34.289 -4.663 1 59.94 ? C8 6ZZ 900 A 1 HETATM 11 C C16 6ZZ . . . B 2 22.673 35.456 -10.321 1 76.11 ? C16 6ZZ 900 A 1 HETATM 12 C C10 6ZZ . . . B 2 25.789 34.56 -3.199 1 59.55 ? C10 6ZZ 900 A 1 HETATM 13 C C24 6ZZ . . . B 2 21.787 37.233 -5.412 1 52.15 ? C24 6ZZ 900 A 1 HETATM 14 C C25 6ZZ . . . B 2 22.776 38.063 -6.149 1 50.96 ? C25 6ZZ 900 A 1 HETATM 15 C C23 6ZZ . . . B 2 22.421 35.877 -5.251 1 52.6 ? C23 6ZZ 900 A 1 HETATM 16 C C26 6ZZ . . . B 2 24.166 37.532 -5.76 1 52.51 ? C26 6ZZ 900 A 1 HETATM 17 C C28 6ZZ . . . B 2 20.007 39.701 -10.282 1 86.88 ? C28 6ZZ 900 A 1 HETATM 18 C C32 6ZZ . . . B 2 19.494 38.754 -12.477 1 86.79 ? C32 6ZZ 900 A 1 HETATM 19 C C29 6ZZ . . . B 2 18.635 40.331 -10.223 1 86.66 ? C29 6ZZ 900 A 1 HETATM 20 C C31 6ZZ . . . B 2 18.125 39.394 -12.447 1 86.1 ? C31 6ZZ 900 A 1 HETATM 21 C C22 6ZZ . . . B 2 23.907 36.19 -5.074 1 54.79 ? C22 6ZZ 900 A 1 HETATM 22 C C13 6ZZ . . . B 2 26.779 35.915 -1.41 1 53.75 ? C13 6ZZ 900 A 1 HETATM 23 C C14 6ZZ . . . B 2 27.229 36.474 -3.764 1 55.91 ? C14 6ZZ 900 A 1 HETATM 24 C C 6ZZ . . . B 2 21.725 35.788 -9.345 1 77.64 ? C 6ZZ 900 A 1 HETATM 25 N N1 6ZZ . . . B 2 25.189 33.17 -9.079 1 63.1 ? N1 6ZZ 900 A 1 HETATM 26 N N3 6ZZ . . . B 2 24.228 35.002 -7.852 1 64.44 ? N3 6ZZ 900 A 1 HETATM 27 N N7 6ZZ . . . B 2 24.819 35.097 -5.508 1 59.12 ? N7 6ZZ 900 A 1 HETATM 28 N N27 6ZZ . . . B 2 19.973 38.497 -11.115 1 85.59 ? N27 6ZZ 900 A 1 HETATM 29 N N15 6ZZ . . . B 2 23.627 34.491 -10.063 1 71.22 ? N15 6ZZ 900 A 1 HETATM 30 N N11 6ZZ . . . B 2 26.55 35.592 -2.82 1 55.55 ? N11 6ZZ 900 A 1 HETATM 31 N N30 6ZZ . . . B 2 18.138 40.616 -11.598 1 86.43 ? N30 6ZZ 900 A 1 HETATM 32 O O12 6ZZ . . . B 2 25.286 33.771 -2.399 1 63.06 ? O12 6ZZ 900 A 1 HETATM 33 H H35 6ZZ . . . B 2 26.347 31.833 -8.065 1 61.23 ? H35 6ZZ 900 A 1 HETATM 34 H H33 6ZZ . . . B 2 21.966 37.474 -12.747 1 80.1 ? H33 6ZZ 900 A 1 HETATM 35 H H34 6ZZ . . . B 2 26.791 32.469 -5.023 1 60.48 ? H34 6ZZ 900 A 1 HETATM 36 H H36 6ZZ . . . B 2 20.083 37.083 -8.876 1 79.87 ? H36 6ZZ 900 A 1 HETATM 37 H H38 6ZZ . . . B 2 20.859 37.162 -5.976 1 52.39 ? H38 6ZZ 900 A 1 HETATM 38 H H37 6ZZ . . . B 2 21.518 37.665 -4.45 1 52.29 ? H37 6ZZ 900 A 1 HETATM 39 H H39 6ZZ . . . B 2 22.602 38.042 -7.223 1 50.5 ? H39 6ZZ 900 A 1 HETATM 40 H H40 6ZZ . . . B 2 22.674 39.114 -5.885 1 50.46 ? H40 6ZZ 900 A 1 HETATM 41 H H42 6ZZ . . . B 2 22.194 35.22 -6.089 1 52.63 ? H42 6ZZ 900 A 1 HETATM 42 H H41 6ZZ . . . B 2 22.032 35.353 -4.38 1 52.74 ? H41 6ZZ 900 A 1 HETATM 43 H H43 6ZZ . . . B 2 24.799 37.451 -6.644 1 52.48 ? H43 6ZZ 900 A 1 HETATM 44 H H44 6ZZ . . . B 2 24.709 38.213 -5.106 1 51.78 ? H44 6ZZ 900 A 1 HETATM 45 H H45 6ZZ . . . B 2 20.747 40.433 -10.603 1 87.04 ? H45 6ZZ 900 A 1 HETATM 46 H H46 6ZZ . . . B 2 20.331 39.429 -9.278 1 86.83 ? H46 6ZZ 900 A 1 HETATM 47 H H48 6ZZ . . . B 2 20.163 39.364 -13.083 1 87.07 ? H48 6ZZ 900 A 1 HETATM 48 H H47 6ZZ . . . B 2 19.428 37.803 -13.005 1 86.83 ? H47 6ZZ 900 A 1 HETATM 49 H H49 6ZZ . . . B 2 17.942 39.687 -9.683 1 86.8 ? H49 6ZZ 900 A 1 HETATM 50 H H50 6ZZ . . . B 2 18.671 41.252 -9.643 1 86.41 ? H50 6ZZ 900 A 1 HETATM 51 H H51 6ZZ . . . B 2 17.814 39.61 -13.468 1 86.11 ? H51 6ZZ 900 A 1 HETATM 52 H H52 6ZZ . . . B 2 17.372 38.698 -12.081 1 86.25 ? H52 6ZZ 900 A 1 HETATM 53 H H53 6ZZ . . . B 2 24.055 36.354 -4.009 1 54.8 ? H53 6ZZ 900 A 1 HETATM 54 H H55 6ZZ . . . B 2 27.792 36.277 -1.241 1 53.01 ? H55 6ZZ 900 A 1 HETATM 55 H H56 6ZZ . . . B 2 26.1 36.699 -1.077 1 53.36 ? H56 6ZZ 900 A 1 HETATM 56 H H54 6ZZ . . . B 2 26.646 35.073 -0.733 1 53.82 ? H54 6ZZ 900 A 1 HETATM 57 H H57 6ZZ . . . B 2 27.911 35.964 -4.443 1 56.51 ? H57 6ZZ 900 A 1 HETATM 58 H H58 6ZZ . . . B 2 26.509 37.011 -4.378 1 55.69 ? H58 6ZZ 900 A 1 HETATM 59 H H59 6ZZ . . . B 2 27.826 37.235 -3.263 1 56.17 ? H59 6ZZ 900 A 1 HETATM 60 H H60 6ZZ . . . B 2 21.67 35.298 -8.375 1 77.39 ? H60 6ZZ 900 A 1 HETATM 61 H H61 6ZZ . . . B 2 23.771 33.851 -10.838 1 70.94 ? H61 6ZZ 900 A 1 HETATM 62 H H62 6ZZ . . . B 2 17.215 41.036 -11.567 1 86.65 ? H62 6ZZ 900 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 62 #