data_5L2W # _model_server_result.job_id X9uG2CRbucIXhkYBgoBETg _model_server_result.datetime_utc '2024-11-08 20:01:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l2w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":900}' # _entry.id 5L2W # _exptl.entry_id 5L2W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 397.494 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[({3-ethyl-5-[(2S)-2-(2-hydroxyethyl)piperidin-1-yl]pyrazolo[1,5-a]pyrimidin-7-yl}amino)methyl]-1-hydroxypyridinium _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5L2W _cell.length_a 100.307 _cell.length_b 100.307 _cell.length_c 151.857 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L2W _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 160 A TYR 159 1_555 A N TPO 161 A TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale2 A C TPO 161 A TPO 160 1_555 A N HIS 162 A HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? # _chem_comp.formula 'C21 H29 N6 O2 1' _chem_comp.formula_weight 397.494 _chem_comp.id 1QK _chem_comp.mon_nstd_flag . _chem_comp.name 3-[({3-ethyl-5-[(2S)-2-(2-hydroxyethyl)piperidin-1-yl]pyrazolo[1,5-a]pyrimidin-7-yl}amino)methyl]-1-hydroxypyridinium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DINACICLIB # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 C01 1QK sing 1 n n C02 C03 1QK sing 2 n n C04 C03 1QK sing 3 n y C04 N05 1QK doub 4 n y C03 C07 1QK doub 5 n y N05 N06 1QK sing 6 n y C07 N06 1QK sing 7 n y C07 N08 1QK sing 8 n y O29 C28 1QK sing 9 n n N06 C11 1QK sing 10 n y C28 C27 1QK sing 11 n n N08 C09 1QK doub 12 n y C11 N12 1QK sing 13 n n C11 C10 1QK doub 14 n y N12 C13 1QK sing 15 n n C09 C10 1QK sing 16 n y C09 N21 1QK sing 17 n n C27 C26 1QK sing 18 n n C26 N21 1QK sing 19 n n C26 C25 1QK sing 20 n n N21 C22 1QK sing 21 n n C13 C14 1QK sing 22 n n C15 C14 1QK doub 23 n y C15 C16 1QK sing 24 n y C25 C24 1QK sing 25 n n C14 C19 1QK sing 26 n y C16 C17 1QK doub 27 n y C22 C23 1QK sing 28 n n C24 C23 1QK sing 29 n n C19 N18 1QK doub 30 n y C17 N18 1QK sing 31 n y N18 O20 1QK sing 32 n n C10 H1 1QK sing 33 n n N12 H2 1QK sing 34 n n C13 H3 1QK sing 35 n n C13 H4 1QK sing 36 n n C15 H5 1QK sing 37 n n C17 H6 1QK sing 38 n n C22 H7 1QK sing 39 n n C22 H8 1QK sing 40 n n C24 H9 1QK sing 41 n n C24 H10 1QK sing 42 n n C26 H11 1QK sing 43 n n C28 H12 1QK sing 44 n n C28 H13 1QK sing 45 n n C01 H14 1QK sing 46 n n C01 H15 1QK sing 47 n n C01 H16 1QK sing 48 n n C02 H17 1QK sing 49 n n C02 H18 1QK sing 50 n n C04 H19 1QK sing 51 n n C16 H20 1QK sing 52 n n C19 H21 1QK sing 53 n n O20 H22 1QK sing 54 n n C23 H23 1QK sing 55 n n C23 H24 1QK sing 56 n n C25 H25 1QK sing 57 n n C25 H26 1QK sing 58 n n C27 H27 1QK sing 59 n n C27 H28 1QK sing 60 n n O29 H29 1QK sing 61 n n # _atom_sites.entry_id 5L2W _atom_sites.fract_transf_matrix[1][1] 0.009969 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009969 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006585 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 1QK A 1 900 900 1QK API . D 4 GOL A 1 901 901 GOL GOL . E 5 HOH A 1 1001 37 HOH HOH . E 5 HOH A 2 1002 19 HOH HOH . E 5 HOH A 3 1003 7 HOH HOH . E 5 HOH A 4 1004 13 HOH HOH . E 5 HOH A 5 1005 3 HOH HOH . E 5 HOH A 6 1006 62 HOH HOH . E 5 HOH A 7 1007 20 HOH HOH . E 5 HOH A 8 1008 5 HOH HOH . E 5 HOH A 9 1009 9 HOH HOH . E 5 HOH A 10 1010 21 HOH HOH . E 5 HOH A 11 1011 39 HOH HOH . E 5 HOH A 12 1012 26 HOH HOH . E 5 HOH A 13 1013 33 HOH HOH . E 5 HOH A 14 1014 53 HOH HOH . E 5 HOH A 15 1015 28 HOH HOH . E 5 HOH A 16 1016 10 HOH HOH . E 5 HOH A 17 1017 40 HOH HOH . E 5 HOH A 18 1018 48 HOH HOH . E 5 HOH A 19 1019 16 HOH HOH . E 5 HOH A 20 1020 34 HOH HOH . E 5 HOH A 21 1021 38 HOH HOH . E 5 HOH A 22 1022 56 HOH HOH . E 5 HOH A 23 1023 76 HOH HOH . E 5 HOH A 24 1024 50 HOH HOH . E 5 HOH A 25 1025 49 HOH HOH . E 5 HOH A 26 1026 22 HOH HOH . E 5 HOH A 27 1027 70 HOH HOH . E 5 HOH A 28 1028 18 HOH HOH . E 5 HOH A 29 1029 27 HOH HOH . E 5 HOH A 30 1030 43 HOH HOH . E 5 HOH A 31 1031 66 HOH HOH . E 5 HOH A 32 1032 74 HOH HOH . E 5 HOH A 33 1033 58 HOH HOH . E 5 HOH A 34 1034 24 HOH HOH . E 5 HOH A 35 1035 15 HOH HOH . E 5 HOH A 36 1036 55 HOH HOH . E 5 HOH A 37 1037 61 HOH HOH . E 5 HOH A 38 1038 71 HOH HOH . E 5 HOH A 39 1039 44 HOH HOH . E 5 HOH A 40 1040 64 HOH HOH . E 5 HOH A 41 1041 69 HOH HOH . E 5 HOH A 42 1042 30 HOH HOH . F 5 HOH B 1 401 68 HOH HOH . F 5 HOH B 2 402 45 HOH HOH . F 5 HOH B 3 403 14 HOH HOH . F 5 HOH B 4 404 75 HOH HOH . F 5 HOH B 5 405 12 HOH HOH . F 5 HOH B 6 406 17 HOH HOH . F 5 HOH B 7 407 46 HOH HOH . F 5 HOH B 8 408 60 HOH HOH . F 5 HOH B 9 409 57 HOH HOH . F 5 HOH B 10 410 36 HOH HOH . F 5 HOH B 11 411 59 HOH HOH . F 5 HOH B 12 412 54 HOH HOH . F 5 HOH B 13 413 41 HOH HOH . F 5 HOH B 14 414 23 HOH HOH . F 5 HOH B 15 415 29 HOH HOH . F 5 HOH B 16 416 25 HOH HOH . F 5 HOH B 17 417 11 HOH HOH . F 5 HOH B 18 418 65 HOH HOH . F 5 HOH B 19 419 63 HOH HOH . F 5 HOH B 20 420 42 HOH HOH . F 5 HOH B 21 421 67 HOH HOH . F 5 HOH B 22 422 51 HOH HOH . F 5 HOH B 23 423 2 HOH HOH . F 5 HOH B 24 424 32 HOH HOH . F 5 HOH B 25 425 35 HOH HOH . F 5 HOH B 26 426 52 HOH HOH . F 5 HOH B 27 427 47 HOH HOH . F 5 HOH B 28 428 6 HOH HOH . F 5 HOH B 29 429 31 HOH HOH . F 5 HOH B 30 430 4 HOH HOH . F 5 HOH B 31 431 73 HOH HOH . F 5 HOH B 32 432 77 HOH HOH . F 5 HOH B 33 433 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 1QK . . . C 3 34.998 24.821 -7.141 1 60.78 ? C10 1QK 900 A 1 HETATM 2 N N12 1QK . . . C 3 36.606 26.324 -8.178 1 69.71 ? N12 1QK 900 A 1 HETATM 3 C C13 1QK . . . C 3 36.022 27.557 -7.702 1 79.17 ? C13 1QK 900 A 1 HETATM 4 C C15 1QK . . . C 3 37.953 27.8 -6.142 1 88.1 ? C15 1QK 900 A 1 HETATM 5 C C17 1QK . . . C 3 37.725 28.852 -3.994 1 91.93 ? C17 1QK 900 A 1 HETATM 6 C C22 1QK . . . C 3 32.502 24.142 -5.777 1 61.06 ? C22 1QK 900 A 1 HETATM 7 C C24 1QK . . . C 3 31.676 22.465 -4.1 1 57.13 ? C24 1QK 900 A 1 HETATM 8 C C26 1QK . . . C 3 33.094 21.688 -6.042 1 60.08 ? C26 1QK 900 A 1 HETATM 9 C C28 1QK . . . C 3 32.357 21.233 -8.461 1 56.31 ? C28 1QK 900 A 1 HETATM 10 C C01 1QK . . . C 3 36.776 19.841 -10.299 1 61.6 ? C01 1QK 900 A 1 HETATM 11 C C02 1QK . . . C 3 37.161 20.395 -8.971 1 61.4 ? C02 1QK 900 A 1 HETATM 12 C C03 1QK . . . C 3 37.203 21.904 -8.929 1 64.57 ? C03 1QK 900 A 1 HETATM 13 C C04 1QK . . . C 3 38.073 22.764 -9.613 1 62.13 ? C04 1QK 900 A 1 HETATM 14 N N05 1QK . . . C 3 37.845 24.043 -9.352 1 63.84 ? N05 1QK 900 A 1 HETATM 15 N N06 1QK . . . C 3 36.783 24.027 -8.475 1 65.4 ? N06 1QK 900 A 1 HETATM 16 C C07 1QK . . . C 3 36.369 22.745 -8.202 1 65.56 ? C07 1QK 900 A 1 HETATM 17 N N08 1QK . . . C 3 35.306 22.477 -7.423 1 63.62 ? N08 1QK 900 A 1 HETATM 18 C C09 1QK . . . C 3 34.6 23.477 -6.916 1 62.07 ? C09 1QK 900 A 1 HETATM 19 C C11 1QK . . . C 3 36.108 25.086 -7.92 1 64.42 ? C11 1QK 900 A 1 HETATM 20 C C14 1QK . . . C 3 36.679 28.052 -6.468 1 86.1 ? C14 1QK 900 A 1 HETATM 21 C C16 1QK . . . C 3 38.494 28.207 -4.897 1 90.07 ? C16 1QK 900 A 1 HETATM 22 N N18 1QK . . . C 3 36.423 29.123 -4.209 1 94.83 ? N18 1QK 900 A 1 HETATM 23 C C19 1QK . . . C 3 35.81 28.837 -5.515 1 90.99 ? C19 1QK 900 A 1 HETATM 24 O O20 1QK . . . C 3 35.614 28.509 -3.205 1 100.29 ? O20 1QK 900 A 1 HETATM 25 N N21 1QK . . . C 3 33.434 23.11 -6.261 1 63.57 ? N21 1QK 900 A 1 HETATM 26 C C23 1QK . . . C 3 32.135 23.903 -4.322 1 59.89 ? C23 1QK 900 A 1 HETATM 27 C C25 1QK . . . C 3 32.724 21.459 -4.581 1 57.65 ? C25 1QK 900 A 1 HETATM 28 C C27 1QK . . . C 3 32.018 21.146 -6.989 1 57.79 ? C27 1QK 900 A 1 HETATM 29 O O29 1QK . . . C 3 33.362 20.287 -8.825 1 56.14 ? O29 1QK 900 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 56 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #