data_5L2W
#
_model_server_result.job_id            9MRfV-0v9ubo4h5_L3aBvg 
_model_server_result.datetime_utc      '2024-11-08 20:03:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5l2w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":901}' 
#
_entry.id    5L2W 
#
_exptl.entry_id    5L2W 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5L2W 
_cell.length_a            100.307 
_cell.length_b            100.307 
_cell.length_c            151.857 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5L2W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C TYR 160 A TYR 159 1_555 A N TPO 161 A TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? 
covale ? covale2 A C TPO 161 A TPO 160 1_555 A N HIS 162 A HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 190 n n 
C1 C2 GOL sing 191 n n 
C1 H11 GOL sing 192 n n 
C1 H12 GOL sing 193 n n 
O1 HO1 GOL sing 194 n n 
C2 O2 GOL sing 195 n n 
C2 C3 GOL sing 196 n n 
C2 H2 GOL sing 197 n n 
O2 HO2 GOL sing 198 n n 
C3 O3 GOL sing 199 n n 
C3 H31 GOL sing 200 n n 
C3 H32 GOL sing 201 n n 
O3 HO3 GOL sing 202 n n 
#
_atom_sites.entry_id                     5L2W 
_atom_sites.fract_transf_matrix[1][1]    0.009969 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009969 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006585 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 1QK A 1 900 900 1QK API . 
D 4 GOL A 1 901 901 GOL GOL . 
E 5 HOH A 1 1001 37 HOH HOH . 
E 5 HOH A 2 1002 19 HOH HOH . 
E 5 HOH A 3 1003 7 HOH HOH . 
E 5 HOH A 4 1004 13 HOH HOH . 
E 5 HOH A 5 1005 3 HOH HOH . 
E 5 HOH A 6 1006 62 HOH HOH . 
E 5 HOH A 7 1007 20 HOH HOH . 
E 5 HOH A 8 1008 5 HOH HOH . 
E 5 HOH A 9 1009 9 HOH HOH . 
E 5 HOH A 10 1010 21 HOH HOH . 
E 5 HOH A 11 1011 39 HOH HOH . 
E 5 HOH A 12 1012 26 HOH HOH . 
E 5 HOH A 13 1013 33 HOH HOH . 
E 5 HOH A 14 1014 53 HOH HOH . 
E 5 HOH A 15 1015 28 HOH HOH . 
E 5 HOH A 16 1016 10 HOH HOH . 
E 5 HOH A 17 1017 40 HOH HOH . 
E 5 HOH A 18 1018 48 HOH HOH . 
E 5 HOH A 19 1019 16 HOH HOH . 
E 5 HOH A 20 1020 34 HOH HOH . 
E 5 HOH A 21 1021 38 HOH HOH . 
E 5 HOH A 22 1022 56 HOH HOH . 
E 5 HOH A 23 1023 76 HOH HOH . 
E 5 HOH A 24 1024 50 HOH HOH . 
E 5 HOH A 25 1025 49 HOH HOH . 
E 5 HOH A 26 1026 22 HOH HOH . 
E 5 HOH A 27 1027 70 HOH HOH . 
E 5 HOH A 28 1028 18 HOH HOH . 
E 5 HOH A 29 1029 27 HOH HOH . 
E 5 HOH A 30 1030 43 HOH HOH . 
E 5 HOH A 31 1031 66 HOH HOH . 
E 5 HOH A 32 1032 74 HOH HOH . 
E 5 HOH A 33 1033 58 HOH HOH . 
E 5 HOH A 34 1034 24 HOH HOH . 
E 5 HOH A 35 1035 15 HOH HOH . 
E 5 HOH A 36 1036 55 HOH HOH . 
E 5 HOH A 37 1037 61 HOH HOH . 
E 5 HOH A 38 1038 71 HOH HOH . 
E 5 HOH A 39 1039 44 HOH HOH . 
E 5 HOH A 40 1040 64 HOH HOH . 
E 5 HOH A 41 1041 69 HOH HOH . 
E 5 HOH A 42 1042 30 HOH HOH . 
F 5 HOH B 1 401 68 HOH HOH . 
F 5 HOH B 2 402 45 HOH HOH . 
F 5 HOH B 3 403 14 HOH HOH . 
F 5 HOH B 4 404 75 HOH HOH . 
F 5 HOH B 5 405 12 HOH HOH . 
F 5 HOH B 6 406 17 HOH HOH . 
F 5 HOH B 7 407 46 HOH HOH . 
F 5 HOH B 8 408 60 HOH HOH . 
F 5 HOH B 9 409 57 HOH HOH . 
F 5 HOH B 10 410 36 HOH HOH . 
F 5 HOH B 11 411 59 HOH HOH . 
F 5 HOH B 12 412 54 HOH HOH . 
F 5 HOH B 13 413 41 HOH HOH . 
F 5 HOH B 14 414 23 HOH HOH . 
F 5 HOH B 15 415 29 HOH HOH . 
F 5 HOH B 16 416 25 HOH HOH . 
F 5 HOH B 17 417 11 HOH HOH . 
F 5 HOH B 18 418 65 HOH HOH . 
F 5 HOH B 19 419 63 HOH HOH . 
F 5 HOH B 20 420 42 HOH HOH . 
F 5 HOH B 21 421 67 HOH HOH . 
F 5 HOH B 22 422 51 HOH HOH . 
F 5 HOH B 23 423 2 HOH HOH . 
F 5 HOH B 24 424 32 HOH HOH . 
F 5 HOH B 25 425 35 HOH HOH . 
F 5 HOH B 26 426 52 HOH HOH . 
F 5 HOH B 27 427 47 HOH HOH . 
F 5 HOH B 28 428 6 HOH HOH . 
F 5 HOH B 29 429 31 HOH HOH . 
F 5 HOH B 30 430 4 HOH HOH . 
F 5 HOH B 31 431 73 HOH HOH . 
F 5 HOH B 32 432 77 HOH HOH . 
F 5 HOH B 33 433 72 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 34.849 35.862 -15.552 1 131.78 ? C1 GOL 901 A 1 
HETATM 2 O O1 GOL . . . D 4 35.254 35.922 -16.913 1 131.11 ? O1 GOL 901 A 1 
HETATM 3 C C2 GOL . . . D 4 35.896 36.481 -14.658 1 131.78 ? C2 GOL 901 A 1 
HETATM 4 O O2 GOL . . . D 4 36.067 37.854 -15.013 1 133.22 ? O2 GOL 901 A 1 
HETATM 5 C C3 GOL . . . D 4 35.478 36.382 -13.21 1 130.56 ? C3 GOL 901 A 1 
HETATM 6 O O3 GOL . . . D 4 36.471 36.953 -12.376 1 130.7 ? O3 GOL 901 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#