data_5L32 # _model_server_result.job_id PLEixKQRs87a854qSaNuBw _model_server_result.datetime_utc '2025-07-07 22:20:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l32 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":202}' # _entry.id 5L32 # _exptl.entry_id 5L32 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.331 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEXAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.01 _cell.angle_gamma 90 _cell.entry_id 5L32 _cell.length_a 48.06 _cell.length_b 62.533 _cell.length_c 72.437 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L32 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 38 A CYS 38 1_555 C SG CYS 38 C CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? disulf ? disulf2 A SG CYS 81 A CYS 81 1_555 D SG CYS 81 D CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 A SG CYS 96 A CYS 96 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? disulf ? disulf4 B SG CYS 38 B CYS 38 1_555 D SG CYS 38 D CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 B SG CYS 81 B CYS 81 1_555 C SG CYS 81 C CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? disulf ? disulf6 C SG CYS 96 C CYS 96 1_555 D SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? covale ? covale1 A SG CYS 98 A CYS 98 1_555 E CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.676 ? covale ? covale2 A SG CYS 101 A CYS 101 1_555 E CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.689 ? covale ? covale3 B SG CYS 98 B CYS 98 1_555 J CAB HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.708 ? covale ? covale4 B SG CYS 101 B CYS 101 1_555 J CAC HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.684 ? covale ? covale5 C SG CYS 98 C CYS 98 1_555 L CAB HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.647 ? covale ? covale6 C SG CYS 101 C CYS 101 1_555 L CAC HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.64 ? covale ? covale7 D SG CYS 98 D CYS 98 1_555 M CAB HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.646 ? covale ? covale8 D SG CYS 101 D CYS 101 1_555 M CAC HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.656 ? metalc ? metalc1 A SD MET 7 A MET 7 1_555 E FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc2 A NE2 HIS 63 A HIS 63 1_555 H ZN ZN . A ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? metalc ? metalc3 A NE2 HIS 73 A HIS 73 1_555 G ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc4 A OD1 ASP 74 A ASP 74 1_555 I ZN ZN . A ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc5 A NE2 HIS 77 A HIS 77 1_555 G ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc6 A NE2 HIS 102 A HIS 102 1_555 E FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc7 G ZN ZN . A ZN 203 1_555 C NE2 HIS 63 C HIS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc8 G ZN ZN . A ZN 203 1_555 D OD1 ASP 74 D ASP 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.818 ? metalc ? metalc9 H ZN ZN . A ZN 204 1_555 B OD1 ASP 74 B ASP 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.823 ? metalc ? metalc10 H ZN ZN . A ZN 204 1_555 C NE2 HIS 73 C HIS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc11 H ZN ZN . A ZN 204 1_555 C NE2 HIS 77 C HIS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc12 I ZN ZN . A ZN 205 1_555 B NE2 HIS 63 B HIS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc13 I ZN ZN . A ZN 205 1_555 D NE2 HIS 73 D HIS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc14 I ZN ZN . A ZN 205 1_555 D NE2 HIS 77 D HIS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc15 B SD MET 7 B MET 7 1_555 J FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc16 B NE2 HIS 73 B HIS 73 1_555 K ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc17 B NE2 HIS 77 B HIS 77 1_555 K ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc18 B NE2 HIS 102 B HIS 102 1_555 J FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc19 K ZN ZN . B ZN 202 1_555 C OD1 ASP 74 C ASP 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc20 K ZN ZN . B ZN 202 1_555 D NE2 HIS 63 D HIS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc21 C SD MET 7 C MET 7 1_555 L FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc22 C NE2 HIS 102 C HIS 102 1_555 L FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc23 D SD MET 7 D MET 7 1_555 M FE HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc24 D NE2 HIS 102 D HIS 102 1_555 M FE HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? # _chem_comp.formula 'C12 H26 O7' _chem_comp.formula_weight 282.331 _chem_comp.id P6G _chem_comp.mon_nstd_flag . _chem_comp.name 'HEXAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'POLYETHYLENE GLYCOL PEG400' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 P6G sing 321 n n O1 H1 P6G sing 322 n n C2 C3 P6G sing 323 n n C2 H21 P6G sing 324 n n C2 H22 P6G sing 325 n n C3 O4 P6G sing 326 n n C3 H31 P6G sing 327 n n C3 H32 P6G sing 328 n n O4 C5 P6G sing 329 n n C5 C6 P6G sing 330 n n C5 H51 P6G sing 331 n n C5 H52 P6G sing 332 n n C6 O7 P6G sing 333 n n C6 H61 P6G sing 334 n n C6 H62 P6G sing 335 n n O7 C8 P6G sing 336 n n C8 C9 P6G sing 337 n n C8 H81 P6G sing 338 n n C8 H82 P6G sing 339 n n C9 O10 P6G sing 340 n n C9 H91 P6G sing 341 n n C9 H92 P6G sing 342 n n O10 C11 P6G sing 343 n n C11 C12 P6G sing 344 n n C11 H111 P6G sing 345 n n C11 H112 P6G sing 346 n n C12 O13 P6G sing 347 n n C12 H121 P6G sing 348 n n C12 H122 P6G sing 349 n n O13 C14 P6G sing 350 n n C14 C15 P6G sing 351 n n C14 H141 P6G sing 352 n n C14 H142 P6G sing 353 n n C15 O16 P6G sing 354 n n C15 H151 P6G sing 355 n n C15 H152 P6G sing 356 n n O16 C17 P6G sing 357 n n C17 C18 P6G sing 358 n n C17 H171 P6G sing 359 n n C17 H172 P6G sing 360 n n C18 O19 P6G sing 361 n n C18 H181 P6G sing 362 n n C18 H182 P6G sing 363 n n O19 H19 P6G sing 364 n n # _atom_sites.entry_id 5L32 _atom_sites.fract_transf_matrix[1][1] 0.020807 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003301 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015992 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013978 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEC A 1 201 150 HEC HEM . F 3 P6G A 1 202 1 P6G P6G . G 4 ZN A 1 203 3 ZN ZN . H 4 ZN A 1 204 1 ZN ZN . I 4 ZN A 1 205 2 ZN ZN . J 2 HEC B 1 201 150 HEC HEM . K 4 ZN B 1 202 4 ZN ZN . L 2 HEC C 1 201 150 HEC HEM . M 2 HEC D 1 201 150 HEC HEM . N 5 HOH A 1 301 51 HOH HOH . N 5 HOH A 2 302 19 HOH HOH . N 5 HOH A 3 303 5 HOH HOH . N 5 HOH A 4 304 8 HOH HOH . N 5 HOH A 5 305 14 HOH HOH . N 5 HOH A 6 306 13 HOH HOH . N 5 HOH A 7 307 31 HOH HOH . N 5 HOH A 8 308 73 HOH HOH . N 5 HOH A 9 309 52 HOH HOH . N 5 HOH A 10 310 7 HOH HOH . N 5 HOH A 11 311 17 HOH HOH . N 5 HOH A 12 312 70 HOH HOH . N 5 HOH A 13 313 10 HOH HOH . N 5 HOH A 14 314 6 HOH HOH . N 5 HOH A 15 315 28 HOH HOH . N 5 HOH A 16 316 9 HOH HOH . N 5 HOH A 17 317 64 HOH HOH . N 5 HOH A 18 318 54 HOH HOH . N 5 HOH A 19 319 23 HOH HOH . O 5 HOH B 1 301 46 HOH HOH . O 5 HOH B 2 302 33 HOH HOH . O 5 HOH B 3 303 32 HOH HOH . O 5 HOH B 4 304 45 HOH HOH . O 5 HOH B 5 305 60 HOH HOH . O 5 HOH B 6 306 53 HOH HOH . O 5 HOH B 7 307 21 HOH HOH . O 5 HOH B 8 308 2 HOH HOH . O 5 HOH B 9 309 18 HOH HOH . O 5 HOH B 10 310 11 HOH HOH . O 5 HOH B 11 311 55 HOH HOH . O 5 HOH B 12 312 16 HOH HOH . O 5 HOH B 13 313 57 HOH HOH . O 5 HOH B 14 314 61 HOH HOH . O 5 HOH B 15 315 65 HOH HOH . O 5 HOH B 16 316 4 HOH HOH . O 5 HOH B 17 317 22 HOH HOH . O 5 HOH B 18 318 25 HOH HOH . O 5 HOH B 19 319 20 HOH HOH . P 5 HOH C 1 301 68 HOH HOH . P 5 HOH C 2 302 62 HOH HOH . P 5 HOH C 3 303 30 HOH HOH . P 5 HOH C 4 304 39 HOH HOH . P 5 HOH C 5 305 29 HOH HOH . P 5 HOH C 6 306 38 HOH HOH . P 5 HOH C 7 307 3 HOH HOH . P 5 HOH C 8 308 67 HOH HOH . P 5 HOH C 9 309 42 HOH HOH . P 5 HOH C 10 310 41 HOH HOH . P 5 HOH C 11 311 56 HOH HOH . P 5 HOH C 12 312 37 HOH HOH . P 5 HOH C 13 313 63 HOH HOH . P 5 HOH C 14 314 40 HOH HOH . P 5 HOH C 15 315 47 HOH HOH . P 5 HOH C 16 316 15 HOH HOH . P 5 HOH C 17 317 1 HOH HOH . P 5 HOH C 18 318 66 HOH HOH . P 5 HOH C 19 319 24 HOH HOH . P 5 HOH C 20 320 27 HOH HOH . P 5 HOH C 21 321 26 HOH HOH . Q 5 HOH D 1 301 74 HOH HOH . Q 5 HOH D 2 302 49 HOH HOH . Q 5 HOH D 3 303 43 HOH HOH . Q 5 HOH D 4 304 48 HOH HOH . Q 5 HOH D 5 305 34 HOH HOH . Q 5 HOH D 6 306 35 HOH HOH . Q 5 HOH D 7 307 71 HOH HOH . Q 5 HOH D 8 308 36 HOH HOH . Q 5 HOH D 9 309 72 HOH HOH . Q 5 HOH D 10 310 44 HOH HOH . Q 5 HOH D 11 311 12 HOH HOH . Q 5 HOH D 12 312 50 HOH HOH . Q 5 HOH D 13 313 58 HOH HOH . Q 5 HOH D 14 314 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 P6G . . . F 3 -5.047 12.28 1.217 1 42.16 ? O1 P6G 202 A 1 HETATM 2 C C2 P6G . . . F 3 -6.187 12.343 0.318 1 39.11 ? C2 P6G 202 A 1 HETATM 3 C C3 P6G . . . F 3 -5.728 11.483 -0.865 1 33.6 ? C3 P6G 202 A 1 HETATM 4 O O4 P6G . . . F 3 -6.921 11.314 -1.711 1 41.27 ? O4 P6G 202 A 1 HETATM 5 C C5 P6G . . . F 3 -6.562 11.233 -3.139 1 39.05 ? C5 P6G 202 A 1 HETATM 6 C C6 P6G . . . F 3 -5.184 11.89 -3.25 1 34.77 ? C6 P6G 202 A 1 HETATM 7 O O7 P6G . . . F 3 -4.808 12.367 -4.589 1 36.18 ? O7 P6G 202 A 1 HETATM 8 C C8 P6G . . . F 3 -4.263 13.72 -4.317 1 38.4 ? C8 P6G 202 A 1 HETATM 9 C C9 P6G . . . F 3 -2.773 13.869 -4.601 1 34.92 ? C9 P6G 202 A 1 HETATM 10 O O10 P6G . . . F 3 -2.01 14.042 -3.403 1 38.38 ? O10 P6G 202 A 1 HETATM 11 C C11 P6G . . . F 3 -0.589 13.761 -3.66 1 35.16 ? C11 P6G 202 A 1 HETATM 12 C C12 P6G . . . F 3 0.045 13.388 -2.3 1 42.04 ? C12 P6G 202 A 1 HETATM 13 O O13 P6G . . . F 3 0.453 11.996 -2.305 1 44.36 ? O13 P6G 202 A 1 HETATM 14 C C14 P6G . . . F 3 1.892 11.833 -2.527 1 46.45 ? C14 P6G 202 A 1 HETATM 15 C C15 P6G . . . F 3 2.031 10.464 -3.233 1 41.68 ? C15 P6G 202 A 1 HETATM 16 O O16 P6G . . . F 3 3.44 10.127 -3.312 1 48.07 ? O16 P6G 202 A 1 HETATM 17 C C17 P6G . . . F 3 4.255 10.802 -4.309 1 39.28 ? C17 P6G 202 A 1 HETATM 18 C C18 P6G . . . F 3 5.449 11.372 -3.503 1 41.42 ? C18 P6G 202 A 1 HETATM 19 O O19 P6G . . . F 3 5.807 10.309 -2.594 1 43.02 ? O19 P6G 202 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 19 #