data_5L35 # _model_server_result.job_id za4wpzaeO7inDA57Gm6nVQ _model_server_result.datetime_utc '2024-11-05 00:38:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l35 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":501}' # _entry.id 5L35 # _exptl.entry_id 5L35 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 35.453 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5L35 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L35 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 420-meric 420 'complete icosahedral assembly' 1 ? heptameric 7 'icosahedral asymmetric unit' 2 ? 35-meric 35 'icosahedral pentamer' 3 ? 42-meric 42 'icosahedral 23 hexamer' 4 ? heptameric 7 'icosahedral asymmetric unit, std point frame' 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 (1-60) A,B,C,D,E,F,G,H 2 1 A,B,C,D,E,F,G,H 3 (1-5) A,B,C,D,E,F,G,H 4 (1,2,6,10,23,24) A,B,C,D,E,F,G,H 5 P # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0 1 0 -0.850651 0 0.525731 0.525731 0 0.850651 0 0 0 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.309017 -0.951057 0 0.951057 0.309017 0 0 0 1 0 0 0 3 'point symmetry operation' ? ? -0.809017 -0.587785 0 0.587785 -0.809017 0 0 0 1 0 0 0 4 'point symmetry operation' ? ? -0.809017 0.587785 0 -0.587785 -0.809017 0 0 0 1 0 0 0 5 'point symmetry operation' ? ? 0.309017 0.951057 0 -0.951057 0.309017 0 0 0 1 0 0 0 6 'point symmetry operation' ? ? -0.447214 0 0.894427 0 -1 0 0.894427 0 0.447214 0 0 0 7 'point symmetry operation' ? ? -0.138197 0.425325 0.894427 -0.951057 -0.309017 0 0.276393 -0.850651 0.447214 0 0 0 8 'point symmetry operation' ? ? 0.361803 0.262866 0.894427 -0.587785 0.809017 0 -0.723607 -0.525731 0.447214 0 0 0 9 'point symmetry operation' ? ? 0.361803 -0.262866 0.894427 0.587785 0.809017 0 -0.723607 0.525731 0.447214 0 0 0 10 'point symmetry operation' ? ? -0.138197 -0.425325 0.894427 0.951057 -0.309017 0 0.276393 0.850651 0.447214 0 0 0 11 'point symmetry operation' ? ? 0.447214 0 -0.894427 0 -1 0 -0.894427 0 -0.447214 0 0 0 12 'point symmetry operation' ? ? 0.138197 -0.425325 -0.894427 -0.951057 -0.309017 0 -0.276393 0.850651 -0.447214 0 0 0 13 'point symmetry operation' ? ? -0.361803 -0.262866 -0.894427 -0.587785 0.809017 0 0.723607 0.525731 -0.447214 0 0 0 14 'point symmetry operation' ? ? -0.361803 0.262866 -0.894427 0.587785 0.809017 0 0.723607 -0.525731 -0.447214 0 0 0 15 'point symmetry operation' ? ? 0.138197 0.425325 -0.894427 0.951057 -0.309017 0 -0.276393 -0.850651 -0.447214 0 0 0 16 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 0 0 0 17 'point symmetry operation' ? ? -0.309017 0.951057 0 0.951057 0.309017 0 0 0 -1 0 0 0 18 'point symmetry operation' ? ? 0.809017 0.587785 0 0.587785 -0.809017 0 0 0 -1 0 0 0 19 'point symmetry operation' ? ? 0.809017 -0.587785 0 -0.587785 -0.809017 0 0 0 -1 0 0 0 20 'point symmetry operation' ? ? -0.309017 -0.951057 0 -0.951057 0.309017 0 0 0 -1 0 0 0 21 'point symmetry operation' ? ? -0.447214 -0.850651 0.276393 0.525731 0 0.850651 -0.723607 0.525731 0.447214 0 0 0 22 'point symmetry operation' ? ? -0.947214 0.16246 0.276393 0.16246 -0.5 0.850651 0.276393 0.850651 0.447214 0 0 0 23 'point symmetry operation' ? ? -0.138197 0.951057 0.276393 -0.425325 -0.309017 0.850651 0.894427 0 0.447214 0 0 0 24 'point symmetry operation' ? ? 0.861803 0.425325 0.276393 -0.425325 0.309017 0.850651 0.276393 -0.850651 0.447214 0 0 0 25 'point symmetry operation' ? ? 0.67082 -0.688191 0.276393 0.16246 0.5 0.850651 -0.723607 -0.525731 0.447214 0 0 0 26 'point symmetry operation' ? ? 0.447214 0.850651 -0.276393 0.525731 0 0.850651 0.723607 -0.525731 -0.447214 0 0 0 27 'point symmetry operation' ? ? 0.947214 -0.16246 -0.276393 0.16246 -0.5 0.850651 -0.276393 -0.850651 -0.447214 0 0 0 28 'point symmetry operation' ? ? 0.138197 -0.951057 -0.276393 -0.425325 -0.309017 0.850651 -0.894427 0 -0.447214 0 0 0 29 'point symmetry operation' ? ? -0.861803 -0.425325 -0.276393 -0.425325 0.309017 0.850651 -0.276393 0.850651 -0.447214 0 0 0 30 'point symmetry operation' ? ? -0.67082 0.688191 -0.276393 0.16246 0.5 0.850651 0.723607 0.525731 -0.447214 0 0 0 31 'point symmetry operation' ? ? -0.447214 0.850651 0.276393 -0.525731 0 -0.850651 -0.723607 -0.525731 0.447214 0 0 0 32 'point symmetry operation' ? ? 0.67082 0.688191 0.276393 -0.16246 0.5 -0.850651 -0.723607 0.525731 0.447214 0 0 0 33 'point symmetry operation' ? ? 0.861803 -0.425325 0.276393 0.425325 0.309017 -0.850651 0.276393 0.850651 0.447214 0 0 0 34 'point symmetry operation' ? ? -0.138197 -0.951057 0.276393 0.425325 -0.309017 -0.850651 0.894427 0 0.447214 0 0 0 35 'point symmetry operation' ? ? -0.947214 -0.16246 0.276393 -0.16246 -0.5 -0.850651 0.276393 -0.850651 0.447214 0 0 0 36 'point symmetry operation' ? ? 0.447214 -0.850651 -0.276393 -0.525731 0 -0.850651 0.723607 0.525731 -0.447214 0 0 0 37 'point symmetry operation' ? ? -0.67082 -0.688191 -0.276393 -0.16246 0.5 -0.850651 0.723607 -0.525731 -0.447214 0 0 0 38 'point symmetry operation' ? ? -0.861803 0.425325 -0.276393 0.425325 0.309017 -0.850651 -0.276393 -0.850651 -0.447214 0 0 0 39 'point symmetry operation' ? ? 0.138197 0.951057 -0.276393 0.425325 -0.309017 -0.850651 -0.894427 0 -0.447214 0 0 0 40 'point symmetry operation' ? ? 0.947214 0.16246 -0.276393 -0.16246 -0.5 -0.850651 -0.276393 0.850651 -0.447214 0 0 0 41 'point symmetry operation' ? ? -0.447214 0.525731 -0.723607 -0.850651 0 0.525731 0.276393 0.850651 0.447214 0 0 0 42 'point symmetry operation' ? ? 0.361803 0.587785 -0.723607 -0.262866 0.809017 0.525731 0.894427 0 0.447214 0 0 0 43 'point symmetry operation' ? ? 0.67082 -0.16246 -0.723607 0.688191 0.5 0.525731 0.276393 -0.850651 0.447214 0 0 0 44 'point symmetry operation' ? ? 0.052786 -0.688191 -0.723607 0.688191 -0.5 0.525731 -0.723607 -0.525731 0.447214 0 0 0 45 'point symmetry operation' ? ? -0.638197 -0.262866 -0.723607 -0.262866 -0.809017 0.525731 -0.723607 0.525731 0.447214 0 0 0 46 'point symmetry operation' ? ? -0.447214 -0.525731 -0.723607 0.850651 0 -0.525731 0.276393 -0.850651 0.447214 0 0 0 47 'point symmetry operation' ? ? -0.638197 0.262866 -0.723607 0.262866 -0.809017 -0.525731 -0.723607 -0.525731 0.447214 0 0 0 48 'point symmetry operation' ? ? 0.052786 0.688191 -0.723607 -0.688191 -0.5 -0.525731 -0.723607 0.525731 0.447214 0 0 0 49 'point symmetry operation' ? ? 0.67082 0.16246 -0.723607 -0.688191 0.5 -0.525731 0.276393 0.850651 0.447214 0 0 0 50 'point symmetry operation' ? ? 0.361803 -0.587785 -0.723607 0.262866 0.809017 -0.525731 0.894427 0 0.447214 0 0 0 51 'point symmetry operation' ? ? 0.447214 -0.525731 0.723607 -0.850651 0 0.525731 -0.276393 -0.850651 -0.447214 0 0 0 52 'point symmetry operation' ? ? -0.361803 -0.587785 0.723607 -0.262866 0.809017 0.525731 -0.894427 0 -0.447214 0 0 0 53 'point symmetry operation' ? ? -0.67082 0.16246 0.723607 0.688191 0.5 0.525731 -0.276393 0.850651 -0.447214 0 0 0 54 'point symmetry operation' ? ? -0.052786 0.688191 0.723607 0.688191 -0.5 0.525731 0.723607 0.525731 -0.447214 0 0 0 55 'point symmetry operation' ? ? 0.638197 0.262866 0.723607 -0.262866 -0.809017 0.525731 0.723607 -0.525731 -0.447214 0 0 0 56 'point symmetry operation' ? ? 0.447214 0.525731 0.723607 0.850651 0 -0.525731 -0.276393 0.850651 -0.447214 0 0 0 57 'point symmetry operation' ? ? 0.638197 -0.262866 0.723607 0.262866 -0.809017 -0.525731 0.723607 0.525731 -0.447214 0 0 0 58 'point symmetry operation' ? ? -0.052786 -0.688191 0.723607 -0.688191 -0.5 -0.525731 0.723607 -0.525731 -0.447214 0 0 0 59 'point symmetry operation' ? ? -0.67082 -0.16246 0.723607 -0.688191 0.5 -0.525731 -0.276393 -0.850651 -0.447214 0 0 0 60 'point symmetry operation' ? ? -0.361803 0.587785 0.723607 0.262866 0.809017 -0.525731 -0.894427 0 -0.447214 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5L35 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id H _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id CL _pdbx_nonpoly_scheme.pdb_strand_id E _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 501 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id CL _pdbx_nonpoly_scheme.auth_mon_id CL _pdbx_nonpoly_scheme.pdb_ins_code . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 2 _atom_site.Cartn_x 73.609 _atom_site.Cartn_y 84.729 _atom_site.Cartn_z 262.797 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 47.3 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 501 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 158 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #