data_5L3C
#
_model_server_result.job_id            QxbE1dX5S1Z0GubXkj88Hw 
_model_server_result.datetime_utc      '2024-10-12 12:24:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5l3c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":901}' 
#
_entry.id    5L3C 
#
_exptl.entry_id    5L3C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5L3C 
_cell.length_a            120.368 
_cell.length_b            180.389 
_cell.length_c            235.422 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5L3C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     5L3C 
_atom_sites.fract_transf_matrix[1][1]    0.008308 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005544 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004248 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          C 
_pdbx_nonpoly_scheme.entity_id        3 
_pdbx_nonpoly_scheme.mon_id           FAD 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      901 
_pdbx_nonpoly_scheme.auth_seq_num     1837 
_pdbx_nonpoly_scheme.pdb_mon_id       FAD 
_pdbx_nonpoly_scheme.auth_mon_id      FAD 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . C 3 -6.716 68.099 88.769 1 78.59 ? PA FAD 901 A 1 
HETATM 2 O O1A FAD . . . C 3 -5.872 68.788 87.671 1 69.29 ? O1A FAD 901 A 1 
HETATM 3 O O2A FAD . . . C 3 -7.984 67.242 88.511 1 68.28 ? O2A FAD 901 A 1 
HETATM 4 O O5B FAD . . . C 3 -7.246 69.341 89.65 1 82.88 ? O5B FAD 901 A 1 
HETATM 5 C C5B FAD . . . C 3 -6.384 70.388 90.086 1 84.33 ? C5B FAD 901 A 1 
HETATM 6 C C4B FAD . . . C 3 -6.974 71.762 89.797 1 75.89 ? C4B FAD 901 A 1 
HETATM 7 O O4B FAD . . . C 3 -5.954 72.765 89.978 1 69.38 ? O4B FAD 901 A 1 
HETATM 8 C C3B FAD . . . C 3 -7.499 71.89 88.372 1 73.51 ? C3B FAD 901 A 1 
HETATM 9 O O3B FAD . . . C 3 -8.918 72.144 88.411 1 69.49 ? O3B FAD 901 A 1 
HETATM 10 C C2B FAD . . . C 3 -6.593 72.986 87.803 1 72.34 ? C2B FAD 901 A 1 
HETATM 11 O O2B FAD . . . C 3 -7.154 73.871 86.837 1 73.35 ? O2B FAD 901 A 1 
HETATM 12 C C1B FAD . . . C 3 -6.204 73.781 89.026 1 70 ? C1B FAD 901 A 1 
HETATM 13 N N9A FAD . . . C 3 -5.03 74.667 88.87 1 69.08 ? N9A FAD 901 A 1 
HETATM 14 C C8A FAD . . . C 3 -3.908 74.458 88.153 1 68.71 ? C8A FAD 901 A 1 
HETATM 15 N N7A FAD . . . C 3 -3.043 75.503 88.256 1 66.84 ? N7A FAD 901 A 1 
HETATM 16 C C5A FAD . . . C 3 -3.624 76.397 89.063 1 71.6 ? C5A FAD 901 A 1 
HETATM 17 C C6A FAD . . . C 3 -3.257 77.724 89.602 1 72.85 ? C6A FAD 901 A 1 
HETATM 18 N N6A FAD . . . C 3 -2.064 78.256 89.25 1 74.25 ? N6A FAD 901 A 1 
HETATM 19 N N1A FAD . . . C 3 -4.152 78.356 90.422 1 71.92 ? N1A FAD 901 A 1 
HETATM 20 C C2A FAD . . . C 3 -5.352 77.804 90.748 1 70.37 ? C2A FAD 901 A 1 
HETATM 21 N N3A FAD . . . C 3 -5.739 76.59 90.292 1 70.93 ? N3A FAD 901 A 1 
HETATM 22 C C4A FAD . . . C 3 -4.934 75.851 89.467 1 71.92 ? C4A FAD 901 A 1 
HETATM 23 N N1 FAD . . . C 3 -8.354 58.226 86.067 1 83.13 ? N1 FAD 901 A 1 
HETATM 24 C C2 FAD . . . C 3 -9.119 57.083 86.167 1 88.42 ? C2 FAD 901 A 1 
HETATM 25 O O2 FAD . . . C 3 -9.396 56.528 87.281 1 82.57 ? O2 FAD 901 A 1 
HETATM 26 N N3 FAD . . . C 3 -9.614 56.526 85.047 1 93.9 ? N3 FAD 901 A 1 
HETATM 27 C C4 FAD . . . C 3 -9.398 57.039 83.818 1 85.48 ? C4 FAD 901 A 1 
HETATM 28 O O4 FAD . . . C 3 -9.859 56.549 82.768 1 100.44 ? O4 FAD 901 A 1 
HETATM 29 C C4X FAD . . . C 3 -8.598 58.23 83.655 1 73.32 ? C4X FAD 901 A 1 
HETATM 30 N N5 FAD . . . C 3 -8.406 58.689 82.425 1 71.47 ? N5 FAD 901 A 1 
HETATM 31 C C5X FAD . . . C 3 -7.681 59.79 82.246 1 77.68 ? C5X FAD 901 A 1 
HETATM 32 C C6 FAD . . . C 3 -7.529 60.249 80.94 1 80.41 ? C6 FAD 901 A 1 
HETATM 33 C C7 FAD . . . C 3 -6.785 61.397 80.687 1 80.07 ? C7 FAD 901 A 1 
HETATM 34 C C7M FAD . . . C 3 -6.599 61.883 79.274 1 79.19 ? C7M FAD 901 A 1 
HETATM 35 C C8 FAD . . . C 3 -6.18 62.115 81.837 1 81.89 ? C8 FAD 901 A 1 
HETATM 36 C C8M FAD . . . C 3 -5.377 63.357 81.618 1 83.14 ? C8M FAD 901 A 1 
HETATM 37 C C9 FAD . . . C 3 -6.337 61.654 83.146 1 81.59 ? C9 FAD 901 A 1 
HETATM 38 C C9A FAD . . . C 3 -7.072 60.499 83.421 1 78.06 ? C9A FAD 901 A 1 
HETATM 39 N N10 FAD . . . C 3 -7.271 59.996 84.745 1 75.51 ? N10 FAD 901 A 1 
HETATM 40 C C10 FAD . . . C 3 -8.054 58.832 84.878 1 74.63 ? C10 FAD 901 A 1 
HETATM 41 C C1' FAD . . . C 3 -6.702 60.631 85.951 1 75.56 ? C1' FAD 901 A 1 
HETATM 42 C C2' FAD . . . C 3 -7.576 61.735 86.563 1 78.62 ? C2' FAD 901 A 1 
HETATM 43 O O2' FAD . . . C 3 -8.201 62.568 85.573 1 83.87 ? O2' FAD 901 A 1 
HETATM 44 C C3' FAD . . . C 3 -6.745 62.645 87.447 1 77.52 ? C3' FAD 901 A 1 
HETATM 45 O O3' FAD . . . C 3 -5.729 61.851 88.055 1 69.53 ? O3' FAD 901 A 1 
HETATM 46 C C4' FAD . . . C 3 -7.585 63.362 88.527 1 84.12 ? C4' FAD 901 A 1 
HETATM 47 O O4' FAD . . . C 3 -8.775 64.028 88.062 1 86.43 ? O4' FAD 901 A 1 
HETATM 48 C C5' FAD . . . C 3 -6.711 64.427 89.166 1 83.37 ? C5' FAD 901 A 1 
HETATM 49 O O5' FAD . . . C 3 -7.349 65.182 90.19 1 69.81 ? O5' FAD 901 A 1 
HETATM 50 P P FAD . . . C 3 -6.349 66.228 90.914 1 75.33 ? P FAD 901 A 1 
HETATM 51 O O1P FAD . . . C 3 -7.236 67.055 91.814 1 95.93 ? O1P FAD 901 A 1 
HETATM 52 O O2P FAD . . . C 3 -5.142 65.557 91.513 1 64.77 ? O2P FAD 901 A 1 
HETATM 53 O O3P FAD . . . C 3 -5.754 67.256 89.793 1 74.61 ? O3P FAD 901 A 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           53 
#