data_5L3E # _model_server_result.job_id 2XAPC1G60OgPrXOtCJd2xw _model_server_result.datetime_utc '2025-02-18 07:33:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l3e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":903}' # _entry.id 5L3E # _exptl.entry_id 5L3E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 478.63 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~4~-(1-benzylpiperidin-4-yl)-N~2~-[3-(dimethylamino)propyl]-6,7-dimethoxyquinazoline-2,4-diamine _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5L3E _cell.length_a 116.57 _cell.length_b 178.4 _cell.length_c 233.78 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L3E _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 167 A SER 289 1_555 I NA NA . A NA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.1 ? metalc ? metalc2 A OG1 THR 502 A THR 624 1_555 I NA NA . A NA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? metalc ? metalc3 C O5B FAD . A FAD 901 1_555 I NA NA . A NA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.189 ? metalc ? metalc4 C O1P FAD . A FAD 901 1_555 I NA NA . A NA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? # _chem_comp.formula 'C27 H38 N6 O2' _chem_comp.formula_weight 478.63 _chem_comp.id E11 _chem_comp.mon_nstd_flag . _chem_comp.name N~4~-(1-benzylpiperidin-4-yl)-N~2~-[3-(dimethylamino)propyl]-6,7-dimethoxyquinazoline-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 N1 E11 doub 83 n y N1 C2 E11 sing 84 n y N3 C2 E11 doub 85 n y C2 NAN E11 sing 86 n n C4 N3 E11 sing 87 n y CAC C4 E11 doub 88 n y C5 C4 E11 sing 89 n y CAF C5 E11 doub 90 n y C5 C6 E11 sing 91 n y NAM C6 E11 sing 92 n n CAD CAC E11 sing 93 n y CAC HAC E11 sing 94 n n OAL CAD E11 sing 95 n n CAE CAD E11 doub 96 n y OAK CAE E11 sing 97 n n CAE CAF E11 sing 98 n y CAF HAF E11 sing 99 n n OAK CBJ E11 sing 100 n n CBI OAL E11 sing 101 n n NAM CAV E11 sing 102 n n NAM HNAM E11 sing 103 n n NAN CAO E11 sing 104 n n NAN HNAN E11 sing 105 n n CAO CAP E11 sing 106 n n CAO HAO E11 sing 107 n n CAO HAOA E11 sing 108 n n CAQ CAP E11 sing 109 n n CAP HAP E11 sing 110 n n CAP HAPA E11 sing 111 n n CAQ NAR E11 sing 112 n n CAQ HAQ E11 sing 113 n n CAQ HAQA E11 sing 114 n n CAS NAR E11 sing 115 n n CAU NAR E11 sing 116 n n CAS HAS E11 sing 117 n n CAS HASA E11 sing 118 n n CAS HASB E11 sing 119 n n CAU HAU E11 sing 120 n n CAU HAUA E11 sing 121 n n CAU HAUB E11 sing 122 n n CAW CAV E11 sing 123 n n CAV CBA E11 sing 124 n n CAV HAV E11 sing 125 n n CAW CAX E11 sing 126 n n CAW HAW E11 sing 127 n n CAW HAWA E11 sing 128 n n CAX NAY E11 sing 129 n n CAX HAX E11 sing 130 n n CAX HAXA E11 sing 131 n n NAY CAZ E11 sing 132 n n NAY CBB E11 sing 133 n n CBA CAZ E11 sing 134 n n CAZ HAZ E11 sing 135 n n CAZ HAZA E11 sing 136 n n CBA HBA E11 sing 137 n n CBA HBAA E11 sing 138 n n CBB CBC E11 sing 139 n n CBB HBB E11 sing 140 n n CBB HBBA E11 sing 141 n n CBH CBC E11 doub 142 n y CBC CBD E11 sing 143 n y CBD CBE E11 doub 144 n y CBD HBD E11 sing 145 n n CBF CBE E11 sing 146 n y CBE HBE E11 sing 147 n n CBG CBF E11 doub 148 n y CBF HBF E11 sing 149 n n CBH CBG E11 sing 150 n y CBG HBG E11 sing 151 n n CBH HBH E11 sing 152 n n CBI HBI E11 sing 153 n n CBI HBIA E11 sing 154 n n CBI HBIB E11 sing 155 n n CBJ HBJ E11 sing 156 n n CBJ HBJA E11 sing 157 n n CBJ HBJB E11 sing 158 n n # _atom_sites.entry_id 5L3E _atom_sites.fract_transf_matrix[1][1] 0.008579 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005605 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004278 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FAD A 1 901 1837 FAD FAD . D 4 E11 A 1 902 1 E11 774 . E 4 E11 A 1 903 2 E11 774 . F 4 E11 A 1 904 3 E11 774 . G 4 E11 A 1 905 4 E11 774 . H 4 E11 A 1 906 5 E11 774 . I 5 NA A 1 907 2 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 E11 . . . E 4 -1.521 39.949 85.069 1 80.73 ? N1 E11 903 A 1 HETATM 2 C C2 E11 . . . E 4 -1.261 40.758 86.111 1 75.5 ? C2 E11 903 A 1 HETATM 3 N N3 E11 . . . E 4 -1.828 42.003 86.118 1 74.35 ? N3 E11 903 A 1 HETATM 4 C C4 E11 . . . E 4 -2.635 42.424 85.098 1 68.83 ? C4 E11 903 A 1 HETATM 5 C C5 E11 . . . E 4 -2.913 41.571 84.018 1 75.87 ? C5 E11 903 A 1 HETATM 6 C C6 E11 . . . E 4 -2.324 40.285 84.02 1 85.68 ? C6 E11 903 A 1 HETATM 7 C CAC E11 . . . E 4 -3.187 43.698 85.119 1 65.08 ? CAC E11 903 A 1 HETATM 8 C CAD E11 . . . E 4 -4.024 44.133 84.08 1 69.37 ? CAD E11 903 A 1 HETATM 9 C CAE E11 . . . E 4 -4.306 43.289 83.012 1 69.36 ? CAE E11 903 A 1 HETATM 10 C CAF E11 . . . E 4 -3.748 42.01 82.981 1 70.88 ? CAF E11 903 A 1 HETATM 11 O OAK E11 . . . E 4 -5.152 43.793 82.042 1 77.64 ? OAK E11 903 A 1 HETATM 12 O OAL E11 . . . E 4 -4.628 45.381 84.031 1 76.02 ? OAL E11 903 A 1 HETATM 13 N NAM E11 . . . E 4 -2.497 39.358 83.016 1 97.36 ? NAM E11 903 A 1 HETATM 14 N NAN E11 . . . E 4 -0.442 40.295 87.099 1 79.58 ? NAN E11 903 A 1 HETATM 15 C CAO E11 . . . E 4 0.152 38.952 87.055 1 96.49 ? CAO E11 903 A 1 HETATM 16 C CAP E11 . . . E 4 1.219 38.742 88.143 1 107.16 ? CAP E11 903 A 1 HETATM 17 C CAQ E11 . . . E 4 2.681 39.09 87.771 1 117.4 ? CAQ E11 903 A 1 HETATM 18 N NAR E11 . . . E 4 3.279 38.333 86.621 1 124.98 ? NAR E11 903 A 1 HETATM 19 C CAS E11 . . . E 4 3.219 36.849 86.781 1 121.9 ? CAS E11 903 A 1 HETATM 20 C CAU E11 . . . E 4 4.64 38.849 86.288 1 106.26 ? CAU E11 903 A 1 HETATM 21 C CAV E11 . . . E 4 -1.885 38.015 83.119 1 113.14 ? CAV E11 903 A 1 HETATM 22 C CAW E11 . . . E 4 -3.082 37.092 82.859 1 121.44 ? CAW E11 903 A 1 HETATM 23 C CAX E11 . . . E 4 -2.694 35.617 82.859 1 120.53 ? CAX E11 903 A 1 HETATM 24 N NAY E11 . . . E 4 -1.47 35.363 82.066 1 120.5 ? NAY E11 903 A 1 HETATM 25 C CAZ E11 . . . E 4 -0.988 36.551 81.287 1 116.64 ? CAZ E11 903 A 1 HETATM 26 C CBA E11 . . . E 4 -0.728 37.779 82.148 1 110.89 ? CBA E11 903 A 1 HETATM 27 C CBB E11 . . . E 4 -1.701 34.16 81.214 1 120.19 ? CBB E11 903 A 1 HETATM 28 C CBC E11 . . . E 4 -0.452 33.866 80.403 1 114.08 ? CBC E11 903 A 1 HETATM 29 C CBD E11 . . . E 4 -0.538 33.755 79.001 1 94.87 ? CBD E11 903 A 1 HETATM 30 C CBE E11 . . . E 4 0.634 33.535 78.292 1 90.13 ? CBE E11 903 A 1 HETATM 31 C CBF E11 . . . E 4 1.863 33.423 78.986 1 99.54 ? CBF E11 903 A 1 HETATM 32 C CBG E11 . . . E 4 1.961 33.537 80.37 1 96.87 ? CBG E11 903 A 1 HETATM 33 C CBH E11 . . . E 4 0.788 33.763 81.082 1 108.98 ? CBH E11 903 A 1 HETATM 34 C CBI E11 . . . E 4 -4.575 46.417 85.025 1 82.91 ? CBI E11 903 A 1 HETATM 35 C CBJ E11 . . . E 4 -5.482 43.216 80.775 1 82 ? CBJ E11 903 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 772 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #