data_5L3E
#
_model_server_result.job_id            I7fR0yFV1w7oxQqJMIWu_A 
_model_server_result.datetime_utc      '2024-10-28 02:28:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5l3e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":906}' 
#
_entry.id    5L3E 
#
_exptl.entry_id    5L3E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              478.63 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N~4~-(1-benzylpiperidin-4-yl)-N~2~-[3-(dimethylamino)propyl]-6,7-dimethoxyquinazoline-2,4-diamine 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5L3E 
_cell.length_a            116.57 
_cell.length_b            178.4 
_cell.length_c            233.78 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5L3E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 167 A SER 289 1_555 I NA NA . A NA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.1 ? 
metalc ? metalc2 A OG1 THR 502 A THR 624 1_555 I NA NA . A NA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? 
metalc ? metalc3 C O5B FAD . A FAD 901 1_555 I NA NA . A NA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.189 ? 
metalc ? metalc4 C O1P FAD . A FAD 901 1_555 I NA NA . A NA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? 
#
_chem_comp.formula           'C27 H38 N6 O2' 
_chem_comp.formula_weight    478.63 
_chem_comp.id                E11 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N~4~-(1-benzylpiperidin-4-yl)-N~2~-[3-(dimethylamino)propyl]-6,7-dimethoxyquinazoline-2,4-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C6 N1 E11 doub 83 n y 
N1 C2 E11 sing 84 n y 
N3 C2 E11 doub 85 n y 
C2 NAN E11 sing 86 n n 
C4 N3 E11 sing 87 n y 
CAC C4 E11 doub 88 n y 
C5 C4 E11 sing 89 n y 
CAF C5 E11 doub 90 n y 
C5 C6 E11 sing 91 n y 
NAM C6 E11 sing 92 n n 
CAD CAC E11 sing 93 n y 
CAC HAC E11 sing 94 n n 
OAL CAD E11 sing 95 n n 
CAE CAD E11 doub 96 n y 
OAK CAE E11 sing 97 n n 
CAE CAF E11 sing 98 n y 
CAF HAF E11 sing 99 n n 
OAK CBJ E11 sing 100 n n 
CBI OAL E11 sing 101 n n 
NAM CAV E11 sing 102 n n 
NAM HNAM E11 sing 103 n n 
NAN CAO E11 sing 104 n n 
NAN HNAN E11 sing 105 n n 
CAO CAP E11 sing 106 n n 
CAO HAO E11 sing 107 n n 
CAO HAOA E11 sing 108 n n 
CAQ CAP E11 sing 109 n n 
CAP HAP E11 sing 110 n n 
CAP HAPA E11 sing 111 n n 
CAQ NAR E11 sing 112 n n 
CAQ HAQ E11 sing 113 n n 
CAQ HAQA E11 sing 114 n n 
CAS NAR E11 sing 115 n n 
CAU NAR E11 sing 116 n n 
CAS HAS E11 sing 117 n n 
CAS HASA E11 sing 118 n n 
CAS HASB E11 sing 119 n n 
CAU HAU E11 sing 120 n n 
CAU HAUA E11 sing 121 n n 
CAU HAUB E11 sing 122 n n 
CAW CAV E11 sing 123 n n 
CAV CBA E11 sing 124 n n 
CAV HAV E11 sing 125 n n 
CAW CAX E11 sing 126 n n 
CAW HAW E11 sing 127 n n 
CAW HAWA E11 sing 128 n n 
CAX NAY E11 sing 129 n n 
CAX HAX E11 sing 130 n n 
CAX HAXA E11 sing 131 n n 
NAY CAZ E11 sing 132 n n 
NAY CBB E11 sing 133 n n 
CBA CAZ E11 sing 134 n n 
CAZ HAZ E11 sing 135 n n 
CAZ HAZA E11 sing 136 n n 
CBA HBA E11 sing 137 n n 
CBA HBAA E11 sing 138 n n 
CBB CBC E11 sing 139 n n 
CBB HBB E11 sing 140 n n 
CBB HBBA E11 sing 141 n n 
CBH CBC E11 doub 142 n y 
CBC CBD E11 sing 143 n y 
CBD CBE E11 doub 144 n y 
CBD HBD E11 sing 145 n n 
CBF CBE E11 sing 146 n y 
CBE HBE E11 sing 147 n n 
CBG CBF E11 doub 148 n y 
CBF HBF E11 sing 149 n n 
CBH CBG E11 sing 150 n y 
CBG HBG E11 sing 151 n n 
CBH HBH E11 sing 152 n n 
CBI HBI E11 sing 153 n n 
CBI HBIA E11 sing 154 n n 
CBI HBIB E11 sing 155 n n 
CBJ HBJ E11 sing 156 n n 
CBJ HBJA E11 sing 157 n n 
CBJ HBJB E11 sing 158 n n 
#
_atom_sites.entry_id                     5L3E 
_atom_sites.fract_transf_matrix[1][1]    0.008579 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005605 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004278 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 FAD A 1 901 1837 FAD FAD . 
D 4 E11 A 1 902 1 E11 774 . 
E 4 E11 A 1 903 2 E11 774 . 
F 4 E11 A 1 904 3 E11 774 . 
G 4 E11 A 1 905 4 E11 774 . 
H 4 E11 A 1 906 5 E11 774 . 
I 5 NA A 1 907 2 NA NA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 E11 . . . H 4 -11.806 35.969 88.939 1 153.76 ? N1 E11 906 A 1 
HETATM 2 C C2 E11 . . . H 4 -12.208 37.227 89.292 1 150.78 ? C2 E11 906 A 1 
HETATM 3 N N3 E11 . . . H 4 -11.882 37.708 90.521 1 147.06 ? N3 E11 906 A 1 
HETATM 4 C C4 E11 . . . H 4 -11.165 36.944 91.398 1 154.67 ? C4 E11 906 A 1 
HETATM 5 C C5 E11 . . . H 4 -10.737 35.643 91.058 1 162.42 ? C5 E11 906 A 1 
HETATM 6 C C6 E11 . . . H 4 -11.084 35.158 89.773 1 164.1 ? C6 E11 906 A 1 
HETATM 7 C CAC E11 . . . H 4 -10.857 37.475 92.648 1 151.86 ? CAC E11 906 A 1 
HETATM 8 C CAD E11 . . . H 4 -10.12 36.747 93.582 1 154.32 ? CAD E11 906 A 1 
HETATM 9 C CAE E11 . . . H 4 -9.679 35.443 93.263 1 160.89 ? CAE E11 906 A 1 
HETATM 10 C CAF E11 . . . H 4 -9.995 34.897 92.003 1 160.62 ? CAF E11 906 A 1 
HETATM 11 O OAK E11 . . . H 4 -8.946 34.67 94.155 1 157.27 ? OAK E11 906 A 1 
HETATM 12 O OAL E11 . . . H 4 -9.853 37.378 94.781 1 154.77 ? OAL E11 906 A 1 
HETATM 13 N NAM E11 . . . H 4 -10.713 33.909 89.352 1 169.89 ? NAM E11 906 A 1 
HETATM 14 N NAN E11 . . . H 4 -12.931 37.943 88.376 1 151.63 ? NAN E11 906 A 1 
HETATM 15 C CAO E11 . . . H 4 -13.47 39.302 88.472 1 135.47 ? CAO E11 906 A 1 
HETATM 16 C CAP E11 . . . H 4 -13.41 39.815 87.016 1 140.89 ? CAP E11 906 A 1 
HETATM 17 C CAQ E11 . . . H 4 -14.553 39.267 86.133 1 141.21 ? CAQ E11 906 A 1 
HETATM 18 N NAR E11 . . . H 4 -14.252 39.037 84.678 1 139.22 ? NAR E11 906 A 1 
HETATM 19 C CAS E11 . . . H 4 -13.255 37.952 84.415 1 137.83 ? CAS E11 906 A 1 
HETATM 20 C CAU E11 . . . H 4 -13.991 40.285 83.928 1 125.51 ? CAU E11 906 A 1 
HETATM 21 C CAV E11 . . . H 4 -11.046 33.32 88.042 1 170.54 ? CAV E11 906 A 1 
HETATM 22 C CAW E11 . . . H 4 -9.863 33.557 87.086 1 173.28 ? CAW E11 906 A 1 
HETATM 23 C CAX E11 . . . H 4 -9.56 32.453 86.058 1 172.06 ? CAX E11 906 A 1 
HETATM 24 N NAY E11 . . . H 4 -10.089 31.069 86.307 1 177.3 ? NAY E11 906 A 1 
HETATM 25 C CAZ E11 . . . H 4 -11.317 30.951 87.148 1 164.36 ? CAZ E11 906 A 1 
HETATM 26 C CBA E11 . . . H 4 -11.299 31.846 88.377 1 163.21 ? CBA E11 906 A 1 
HETATM 27 C CBB E11 . . . H 4 -9.055 29.977 86.505 1 169.69 ? CBB E11 906 A 1 
HETATM 28 C CBC E11 . . . H 4 -8.215 29.796 87.79 1 160.53 ? CBC E11 906 A 1 
HETATM 29 C CBD E11 . . . H 4 -7.811 28.484 88.118 1 138.44 ? CBD E11 906 A 1 
HETATM 30 C CBE E11 . . . H 4 -7.04 28.223 89.257 1 126.56 ? CBE E11 906 A 1 
HETATM 31 C CBF E11 . . . H 4 -6.645 29.275 90.087 1 131.32 ? CBF E11 906 A 1 
HETATM 32 C CBG E11 . . . H 4 -7.013 30.588 89.781 1 137.87 ? CBG E11 906 A 1 
HETATM 33 C CBH E11 . . . H 4 -7.785 30.844 88.637 1 156.13 ? CBH E11 906 A 1 
HETATM 34 C CBI E11 . . . H 4 -9.13 38.626 94.852 1 136.54 ? CBI E11 906 A 1 
HETATM 35 C CBJ E11 . . . H 4 -7.569 34.307 93.966 1 142.29 ? CBJ E11 906 A 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           35 
#