data_5L3F
#
_model_server_result.job_id            bSW0HIyi7DMRreKOrnGAlQ 
_model_server_result.datetime_utc      '2024-10-18 04:20:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5l3f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":901}' 
#
_entry.id    5L3F 
#
_exptl.entry_id    5L3F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5L3F 
_cell.length_a            119.204 
_cell.length_b            178.998 
_cell.length_c            235.777 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5L3F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C CAI 6FH 1 C 6FH 1 1_555 C N 4FO 2 C 4FO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale2 C C 4FO 2 C 4FO 2 1_555 C N DTH 3 C DTH 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale3 C C DTH 3 C DTH 3 1_555 C N 4FO 4 C 4FO 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? 
covale ? covale4 C C 4FO 4 C 4FO 4 1_555 C N 4FO 5 C 4FO 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? 
covale ? covale5 C C 4FO 5 C 4FO 5 1_555 C N DAB 6 C DAB 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 ? 
covale ? covale6 C NZ 4FO 5 C 4FO 5 1_555 C C DTH 11 C DTH 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? 
covale ? covale7 C C DAB 6 C DAB 6 1_555 C N PHE 7 C PHE 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 ? 
covale ? covale8 C C LEU 8 C LEU 8 1_555 C N DAB 9 C DAB 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? 
covale ? covale9 C C DAB 9 C DAB 9 1_555 C N DAB 10 C DAB 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.406 ? 
covale ? covale10 C C DAB 10 C DAB 10 1_555 C N DTH 11 C DTH 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.407 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 161 n n 
PA O2A FAD sing 162 n n 
PA O5B FAD sing 163 n n 
PA O3P FAD sing 164 n n 
O2A HOA2 FAD sing 165 n n 
O5B C5B FAD sing 166 n n 
C5B C4B FAD sing 167 n n 
C5B H51A FAD sing 168 n n 
C5B H52A FAD sing 169 n n 
C4B O4B FAD sing 170 n n 
C4B C3B FAD sing 171 n n 
C4B H4B FAD sing 172 n n 
O4B C1B FAD sing 173 n n 
C3B O3B FAD sing 174 n n 
C3B C2B FAD sing 175 n n 
C3B H3B FAD sing 176 n n 
O3B HO3A FAD sing 177 n n 
C2B O2B FAD sing 178 n n 
C2B C1B FAD sing 179 n n 
C2B H2B FAD sing 180 n n 
O2B HO2A FAD sing 181 n n 
C1B N9A FAD sing 182 n n 
C1B H1B FAD sing 183 n n 
N9A C8A FAD sing 184 n y 
N9A C4A FAD sing 185 n y 
C8A N7A FAD doub 186 n y 
C8A H8A FAD sing 187 n n 
N7A C5A FAD sing 188 n y 
C5A C6A FAD sing 189 n y 
C5A C4A FAD doub 190 n y 
C6A N6A FAD sing 191 n n 
C6A N1A FAD doub 192 n y 
N6A H61A FAD sing 193 n n 
N6A H62A FAD sing 194 n n 
N1A C2A FAD sing 195 n y 
C2A N3A FAD doub 196 n y 
C2A H2A FAD sing 197 n n 
N3A C4A FAD sing 198 n y 
N1 C2 FAD sing 199 n n 
N1 C10 FAD doub 200 n n 
C2 O2 FAD doub 201 n n 
C2 N3 FAD sing 202 n n 
N3 C4 FAD sing 203 n n 
N3 HN3 FAD sing 204 n n 
C4 O4 FAD doub 205 n n 
C4 C4X FAD sing 206 n n 
C4X N5 FAD doub 207 n n 
C4X C10 FAD sing 208 n n 
N5 C5X FAD sing 209 n n 
C5X C6 FAD doub 210 n y 
C5X C9A FAD sing 211 n y 
C6 C7 FAD sing 212 n y 
C6 H6 FAD sing 213 n n 
C7 C7M FAD sing 214 n n 
C7 C8 FAD doub 215 n y 
C7M HM71 FAD sing 216 n n 
C7M HM72 FAD sing 217 n n 
C7M HM73 FAD sing 218 n n 
C8 C8M FAD sing 219 n n 
C8 C9 FAD sing 220 n y 
C8M HM81 FAD sing 221 n n 
C8M HM82 FAD sing 222 n n 
C8M HM83 FAD sing 223 n n 
C9 C9A FAD doub 224 n y 
C9 H9 FAD sing 225 n n 
C9A N10 FAD sing 226 n n 
N10 C10 FAD sing 227 n n 
N10 C1' FAD sing 228 n n 
C1' C2' FAD sing 229 n n 
C1' "H1'1" FAD sing 230 n n 
C1' "H1'2" FAD sing 231 n n 
C2' O2' FAD sing 232 n n 
C2' C3' FAD sing 233 n n 
C2' H2' FAD sing 234 n n 
O2' HO2' FAD sing 235 n n 
C3' O3' FAD sing 236 n n 
C3' C4' FAD sing 237 n n 
C3' H3' FAD sing 238 n n 
O3' HO3' FAD sing 239 n n 
C4' O4' FAD sing 240 n n 
C4' C5' FAD sing 241 n n 
C4' H4' FAD sing 242 n n 
O4' HO4' FAD sing 243 n n 
C5' O5' FAD sing 244 n n 
C5' "H5'1" FAD sing 245 n n 
C5' "H5'2" FAD sing 246 n n 
O5' P FAD sing 247 n n 
P O1P FAD doub 248 n n 
P O2P FAD sing 249 n n 
P O3P FAD sing 250 n n 
O2P HOP2 FAD sing 251 n n 
#
_atom_sites.entry_id                     5L3F 
_atom_sites.fract_transf_matrix[1][1]    0.008389 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005587 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004241 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          D 
_pdbx_nonpoly_scheme.entity_id        4 
_pdbx_nonpoly_scheme.mon_id           FAD 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      901 
_pdbx_nonpoly_scheme.auth_seq_num     901 
_pdbx_nonpoly_scheme.pdb_mon_id       FAD 
_pdbx_nonpoly_scheme.auth_mon_id      FAD 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . D 4 6.661 -67.661 -28.813 1 77.16 ? PA FAD 901 A 1 
HETATM 2 O O1A FAD . . . D 4 5.973 -68.24 -30.027 1 68.11 ? O1A FAD 901 A 1 
HETATM 3 O O2A FAD . . . D 4 7.994 -67.022 -29.13 1 78.04 ? O2A FAD 901 A 1 
HETATM 4 O O5B FAD . . . D 4 6.906 -68.807 -27.773 1 90.22 ? O5B FAD 901 A 1 
HETATM 5 C C5B FAD . . . D 4 6.013 -69.891 -27.8 1 86.98 ? C5B FAD 901 A 1 
HETATM 6 C C4B FAD . . . D 4 6.798 -71.211 -27.849 1 85.32 ? C4B FAD 901 A 1 
HETATM 7 O O4B FAD . . . D 4 5.959 -72.166 -27.541 1 77.38 ? O4B FAD 901 A 1 
HETATM 8 C C3B FAD . . . D 4 7.216 -71.468 -29.278 1 87.16 ? C3B FAD 901 A 1 
HETATM 9 O O3B FAD . . . D 4 8.514 -71.806 -29.346 1 89.05 ? O3B FAD 901 A 1 
HETATM 10 C C2B FAD . . . D 4 6.359 -72.689 -29.702 1 79.05 ? C2B FAD 901 A 1 
HETATM 11 O O2B FAD . . . D 4 7.164 -73.482 -30.589 1 80.09 ? O2B FAD 901 A 1 
HETATM 12 C C1B FAD . . . D 4 6.221 -73.323 -28.596 1 76.85 ? C1B FAD 901 A 1 
HETATM 13 N N9A FAD . . . D 4 5.066 -74.125 -28.675 1 77.88 ? N9A FAD 901 A 1 
HETATM 14 C C8A FAD . . . D 4 3.925 -73.775 -29.291 1 78.79 ? C8A FAD 901 A 1 
HETATM 15 N N7A FAD . . . D 4 3.04 -74.81 -29.167 1 72.61 ? N7A FAD 901 A 1 
HETATM 16 C C5A FAD . . . D 4 3.668 -75.788 -28.467 1 68.31 ? C5A FAD 901 A 1 
HETATM 17 C C6A FAD . . . D 4 3.208 -76.994 -28.085 1 67.81 ? C6A FAD 901 A 1 
HETATM 18 N N6A FAD . . . D 4 1.942 -77.674 -28.273 1 65.84 ? N6A FAD 901 A 1 
HETATM 19 N N1A FAD . . . D 4 4.022 -77.832 -27.367 1 67.97 ? N1A FAD 901 A 1 
HETATM 20 C C2A FAD . . . D 4 5.288 -77.464 -27.042 1 65.68 ? C2A FAD 901 A 1 
HETATM 21 N N3A FAD . . . D 4 5.748 -76.238 -27.435 1 66.19 ? N3A FAD 901 A 1 
HETATM 22 C C4A FAD . . . D 4 4.916 -75.397 -28.15 1 71.82 ? C4A FAD 901 A 1 
HETATM 23 N N1 FAD . . . D 4 8.076 -57.952 -31.592 1 91.14 ? N1 FAD 901 A 1 
HETATM 24 C C2 FAD . . . D 4 8.957 -56.77 -31.535 1 92.99 ? C2 FAD 901 A 1 
HETATM 25 O O2 FAD . . . D 4 9.196 -56.213 -30.47 1 95.7 ? O2 FAD 901 A 1 
HETATM 26 N N3 FAD . . . D 4 9.566 -56.232 -32.743 1 94.17 ? N3 FAD 901 A 1 
HETATM 27 C C4 FAD . . . D 4 9.307 -56.859 -33.981 1 93 ? C4 FAD 901 A 1 
HETATM 28 O O4 FAD . . . D 4 9.805 -56.44 -35.054 1 97.09 ? O4 FAD 901 A 1 
HETATM 29 C C4X FAD . . . D 4 8.41 -58.036 -34.029 1 90.73 ? C4X FAD 901 A 1 
HETATM 30 N N5 FAD . . . D 4 8.216 -58.599 -35.282 1 96.04 ? N5 FAD 901 A 1 
HETATM 31 C C5X FAD . . . D 4 7.379 -59.773 -35.415 1 96.89 ? C5X FAD 901 A 1 
HETATM 32 C C6 FAD . . . D 4 7.213 -60.282 -36.681 1 96.5 ? C6 FAD 901 A 1 
HETATM 33 C C7 FAD . . . D 4 6.421 -61.394 -36.853 1 102.86 ? C7 FAD 901 A 1 
HETATM 34 C C7M FAD . . . D 4 6.367 -61.806 -38.311 1 109.38 ? C7M FAD 901 A 1 
HETATM 35 C C8 FAD . . . D 4 5.807 -61.966 -35.765 1 101.42 ? C8 FAD 901 A 1 
HETATM 36 C C8M FAD . . . D 4 4.955 -63.192 -36.045 1 99.98 ? C8M FAD 901 A 1 
HETATM 37 C C9 FAD . . . D 4 5.969 -61.455 -34.48 1 99.73 ? C9 FAD 901 A 1 
HETATM 38 C C9A FAD . . . D 4 6.768 -60.333 -34.307 1 98.84 ? C9A FAD 901 A 1 
HETATM 39 N N10 FAD . . . D 4 6.969 -59.75 -32.981 1 95.56 ? N10 FAD 901 A 1 
HETATM 40 C C10 FAD . . . D 4 7.803 -58.597 -32.852 1 89.46 ? C10 FAD 901 A 1 
HETATM 41 C C1' FAD . . . D 4 6.319 -60.382 -31.841 1 91.08 ? C1' FAD 901 A 1 
HETATM 42 C C2' FAD . . . D 4 7.336 -61.195 -31.007 1 84.94 ? C2' FAD 901 A 1 
HETATM 43 O O2' FAD . . . D 4 8.153 -61.905 -31.798 1 87.04 ? O2' FAD 901 A 1 
HETATM 44 C C3' FAD . . . D 4 6.615 -62.24 -30.175 1 81.78 ? C3' FAD 901 A 1 
HETATM 45 O O3' FAD . . . D 4 5.527 -61.626 -29.543 1 77.53 ? O3' FAD 901 A 1 
HETATM 46 C C4' FAD . . . D 4 7.511 -62.752 -29.06 1 89.65 ? C4' FAD 901 A 1 
HETATM 47 O O4' FAD . . . D 4 8.479 -63.675 -29.457 1 93.73 ? O4' FAD 901 A 1 
HETATM 48 C C5' FAD . . . D 4 6.549 -63.484 -28.145 1 88.81 ? C5' FAD 901 A 1 
HETATM 49 O O5' FAD . . . D 4 7.263 -64.56 -27.619 1 81.18 ? O5' FAD 901 A 1 
HETATM 50 P P FAD . . . D 4 6.406 -65.678 -26.959 1 71.53 ? P FAD 901 A 1 
HETATM 51 O O1P FAD . . . D 4 7.453 -66.438 -26.203 1 86.21 ? O1P FAD 901 A 1 
HETATM 52 O O2P FAD . . . D 4 5.285 -65.208 -26.004 1 60.06 ? O2P FAD 901 A 1 
HETATM 53 O O3P FAD . . . D 4 5.776 -66.556 -28.111 1 84.7 ? O3P FAD 901 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           53 
#