data_5L3G
#
_model_server_result.job_id            Zbbj5XmuLRMX4u7rsT8j4Q 
_model_server_result.datetime_utc      '2024-11-30 09:11:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5l3g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":901}' 
#
_entry.id    5L3G 
#
_exptl.entry_id    5L3G 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5L3G 
_cell.length_a            119.864 
_cell.length_b            179.49 
_cell.length_c            236.985 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5L3G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C CAI 6F5 1 C 6F5 1 1_555 C N 4FO 2 C 4FO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? 
covale ? covale2 C C 4FO 2 C 4FO 2 1_555 C N DTH 3 C DTH 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? 
covale ? covale3 C C DTH 3 C DTH 3 1_555 C N 4FO 4 C 4FO 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? 
covale ? covale4 C C 4FO 4 C 4FO 4 1_555 C N 4FO 5 C 4FO 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? 
covale ? covale5 C C 4FO 5 C 4FO 5 1_555 C N DAB 6 C DAB 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? 
covale ? covale6 C NZ 4FO 5 C 4FO 5 1_555 C C DTH 11 C DTH 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? 
covale ? covale7 C C DAB 6 C DAB 6 1_555 C N LEU 7 C LEU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? 
covale ? covale8 C C LEU 8 C LEU 8 1_555 C N DAB 9 C DAB 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? 
covale ? covale9 C C DAB 9 C DAB 9 1_555 C N DAB 10 C DAB 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.41 ? 
covale ? covale10 C C DAB 10 C DAB 10 1_555 C N DTH 11 C DTH 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
metalc ? metalc1 A OG SER 167 A SER 289 1_555 E NA NA . A NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.093 ? 
metalc ? metalc2 A OG1 THR 502 A THR 624 1_555 E NA NA . A NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 158 n n 
PA O2A FAD sing 159 n n 
PA O5B FAD sing 160 n n 
PA O3P FAD sing 161 n n 
O2A HOA2 FAD sing 162 n n 
O5B C5B FAD sing 163 n n 
C5B C4B FAD sing 164 n n 
C5B H51A FAD sing 165 n n 
C5B H52A FAD sing 166 n n 
C4B O4B FAD sing 167 n n 
C4B C3B FAD sing 168 n n 
C4B H4B FAD sing 169 n n 
O4B C1B FAD sing 170 n n 
C3B O3B FAD sing 171 n n 
C3B C2B FAD sing 172 n n 
C3B H3B FAD sing 173 n n 
O3B HO3A FAD sing 174 n n 
C2B O2B FAD sing 175 n n 
C2B C1B FAD sing 176 n n 
C2B H2B FAD sing 177 n n 
O2B HO2A FAD sing 178 n n 
C1B N9A FAD sing 179 n n 
C1B H1B FAD sing 180 n n 
N9A C8A FAD sing 181 n y 
N9A C4A FAD sing 182 n y 
C8A N7A FAD doub 183 n y 
C8A H8A FAD sing 184 n n 
N7A C5A FAD sing 185 n y 
C5A C6A FAD sing 186 n y 
C5A C4A FAD doub 187 n y 
C6A N6A FAD sing 188 n n 
C6A N1A FAD doub 189 n y 
N6A H61A FAD sing 190 n n 
N6A H62A FAD sing 191 n n 
N1A C2A FAD sing 192 n y 
C2A N3A FAD doub 193 n y 
C2A H2A FAD sing 194 n n 
N3A C4A FAD sing 195 n y 
N1 C2 FAD sing 196 n n 
N1 C10 FAD doub 197 n n 
C2 O2 FAD doub 198 n n 
C2 N3 FAD sing 199 n n 
N3 C4 FAD sing 200 n n 
N3 HN3 FAD sing 201 n n 
C4 O4 FAD doub 202 n n 
C4 C4X FAD sing 203 n n 
C4X N5 FAD doub 204 n n 
C4X C10 FAD sing 205 n n 
N5 C5X FAD sing 206 n n 
C5X C6 FAD doub 207 n y 
C5X C9A FAD sing 208 n y 
C6 C7 FAD sing 209 n y 
C6 H6 FAD sing 210 n n 
C7 C7M FAD sing 211 n n 
C7 C8 FAD doub 212 n y 
C7M HM71 FAD sing 213 n n 
C7M HM72 FAD sing 214 n n 
C7M HM73 FAD sing 215 n n 
C8 C8M FAD sing 216 n n 
C8 C9 FAD sing 217 n y 
C8M HM81 FAD sing 218 n n 
C8M HM82 FAD sing 219 n n 
C8M HM83 FAD sing 220 n n 
C9 C9A FAD doub 221 n y 
C9 H9 FAD sing 222 n n 
C9A N10 FAD sing 223 n n 
N10 C10 FAD sing 224 n n 
N10 C1' FAD sing 225 n n 
C1' C2' FAD sing 226 n n 
C1' "H1'1" FAD sing 227 n n 
C1' "H1'2" FAD sing 228 n n 
C2' O2' FAD sing 229 n n 
C2' C3' FAD sing 230 n n 
C2' H2' FAD sing 231 n n 
O2' HO2' FAD sing 232 n n 
C3' O3' FAD sing 233 n n 
C3' C4' FAD sing 234 n n 
C3' H3' FAD sing 235 n n 
O3' HO3' FAD sing 236 n n 
C4' O4' FAD sing 237 n n 
C4' C5' FAD sing 238 n n 
C4' H4' FAD sing 239 n n 
O4' HO4' FAD sing 240 n n 
C5' O5' FAD sing 241 n n 
C5' "H5'1" FAD sing 242 n n 
C5' "H5'2" FAD sing 243 n n 
O5' P FAD sing 244 n n 
P O1P FAD doub 245 n n 
P O2P FAD sing 246 n n 
P O3P FAD sing 247 n n 
O2P HOP2 FAD sing 248 n n 
#
_atom_sites.entry_id                     5L3G 
_atom_sites.fract_transf_matrix[1][1]    0.008343 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005571 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00422 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 FAD A 1 901 901 FAD FAD . 
E 5 NA A 1 902 902 NA NA . 
F 5 NA A 1 903 903 NA NA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . D 4 6.579 -67.915 -28.88 1 113.82 ? PA FAD 901 A 1 
HETATM 2 O O1A FAD . . . D 4 5.7 -68.327 -29.992 1 67.21 ? O1A FAD 901 A 1 
HETATM 3 O O2A FAD . . . D 4 7.832 -67.195 -29.247 1 74.52 ? O2A FAD 901 A 1 
HETATM 4 O O5B FAD . . . D 4 7.067 -69.179 -28.126 1 93.51 ? O5B FAD 901 A 1 
HETATM 5 C C5B FAD . . . D 4 6.185 -70.186 -27.664 1 89.55 ? C5B FAD 901 A 1 
HETATM 6 C C4B FAD . . . D 4 6.801 -71.576 -27.941 1 86.26 ? C4B FAD 901 A 1 
HETATM 7 O O4B FAD . . . D 4 5.803 -72.403 -27.817 1 83.48 ? O4B FAD 901 A 1 
HETATM 8 C C3B FAD . . . D 4 7.255 -71.751 -29.405 1 90.73 ? C3B FAD 901 A 1 
HETATM 9 O O3B FAD . . . D 4 8.577 -72.07 -29.572 1 84 ? O3B FAD 901 A 1 
HETATM 10 C C2B FAD . . . D 4 6.25 -72.857 -29.899 1 88.74 ? C2B FAD 901 A 1 
HETATM 11 O O2B FAD . . . D 4 6.763 -73.659 -31.022 1 93.48 ? O2B FAD 901 A 1 
HETATM 12 C C1B FAD . . . D 4 6.113 -73.577 -28.856 1 86.21 ? C1B FAD 901 A 1 
HETATM 13 N N9A FAD . . . D 4 4.99 -74.449 -28.922 1 84.19 ? N9A FAD 901 A 1 
HETATM 14 C C8A FAD . . . D 4 3.816 -74.212 -29.548 1 80.81 ? C8A FAD 901 A 1 
HETATM 15 N N7A FAD . . . D 4 2.964 -75.278 -29.379 1 74.73 ? N7A FAD 901 A 1 
HETATM 16 C C5A FAD . . . D 4 3.632 -76.186 -28.61 1 89.21 ? C5A FAD 901 A 1 
HETATM 17 C C6A FAD . . . D 4 3.214 -77.422 -28.141 1 91.43 ? C6A FAD 901 A 1 
HETATM 18 N N6A FAD . . . D 4 2.005 -78.211 -28.254 1 85.32 ? N6A FAD 901 A 1 
HETATM 19 N N1A FAD . . . D 4 4.062 -78.169 -27.36 1 78.16 ? N1A FAD 901 A 1 
HETATM 20 C C2A FAD . . . D 4 5.319 -77.678 -27.082 1 80.79 ? C2A FAD 901 A 1 
HETATM 21 N N3A FAD . . . D 4 5.759 -76.455 -27.544 1 75.09 ? N3A FAD 901 A 1 
HETATM 22 C C4A FAD . . . D 4 4.886 -75.694 -28.316 1 83.37 ? C4A FAD 901 A 1 
HETATM 23 N N1 FAD . . . D 4 7.938 -58.315 -31.775 1 92.87 ? N1 FAD 901 A 1 
HETATM 24 C C2 FAD . . . D 4 8.791 -57.115 -31.617 1 104.02 ? C2 FAD 901 A 1 
HETATM 25 O O2 FAD . . . D 4 8.987 -56.623 -30.494 1 110.93 ? O2 FAD 901 A 1 
HETATM 26 N N3 FAD . . . D 4 9.386 -56.5 -32.816 1 102.38 ? N3 FAD 901 A 1 
HETATM 27 C C4 FAD . . . D 4 9.153 -57.096 -34.089 1 93.66 ? C4 FAD 901 A 1 
HETATM 28 O O4 FAD . . . D 4 9.635 -56.652 -35.157 1 103.83 ? O4 FAD 901 A 1 
HETATM 29 C C4X FAD . . . D 4 8.3 -58.291 -34.212 1 83.77 ? C4X FAD 901 A 1 
HETATM 30 N N5 FAD . . . D 4 8.136 -58.814 -35.493 1 99.12 ? N5 FAD 901 A 1 
HETATM 31 C C5X FAD . . . D 4 7.329 -60.017 -35.711 1 106.47 ? C5X FAD 901 A 1 
HETATM 32 C C6 FAD . . . D 4 7.168 -60.52 -37.001 1 106.9 ? C6 FAD 901 A 1 
HETATM 33 C C7 FAD . . . D 4 6.404 -61.665 -37.193 1 115.07 ? C7 FAD 901 A 1 
HETATM 34 C C7M FAD . . . D 4 6.339 -62.059 -38.656 1 107.63 ? C7M FAD 901 A 1 
HETATM 35 C C8 FAD . . . D 4 5.812 -62.29 -36.103 1 120.52 ? C8 FAD 901 A 1 
HETATM 36 C C8M FAD . . . D 4 4.993 -63.548 -36.378 1 104.87 ? C8M FAD 901 A 1 
HETATM 37 C C9 FAD . . . D 4 5.966 -61.784 -34.805 1 116.88 ? C9 FAD 901 A 1 
HETATM 38 C C9A FAD . . . D 4 6.727 -60.639 -34.626 1 110.63 ? C9A FAD 901 A 1 
HETATM 39 N N10 FAD . . . D 4 6.902 -60.104 -33.288 1 105.72 ? N10 FAD 901 A 1 
HETATM 40 C C10 FAD . . . D 4 7.692 -58.911 -33.076 1 93.78 ? C10 FAD 901 A 1 
HETATM 41 C C1' FAD . . . D 4 6.236 -60.846 -32.233 1 102.5 ? C1' FAD 901 A 1 
HETATM 42 C C2' FAD . . . D 4 7.25 -61.434 -31.24 1 99.49 ? C2' FAD 901 A 1 
HETATM 43 O O2' FAD . . . D 4 8.15 -62.151 -31.936 1 93.72 ? O2' FAD 901 A 1 
HETATM 44 C C3' FAD . . . D 4 6.448 -62.293 -30.271 1 97.99 ? C3' FAD 901 A 1 
HETATM 45 O O3' FAD . . . D 4 5.678 -61.422 -29.474 1 87.93 ? O3' FAD 901 A 1 
HETATM 46 C C4' FAD . . . D 4 7.316 -63.125 -29.344 1 100.52 ? C4' FAD 901 A 1 
HETATM 47 O O4' FAD . . . D 4 8.277 -63.921 -29.969 1 99.28 ? O4' FAD 901 A 1 
HETATM 48 C C5' FAD . . . D 4 6.304 -64.016 -28.633 1 99.73 ? C5' FAD 901 A 1 
HETATM 49 O O5' FAD . . . D 4 7.035 -64.769 -27.706 1 101.44 ? O5' FAD 901 A 1 
HETATM 50 P P FAD . . . D 4 6.309 -65.932 -26.939 1 89.66 ? P FAD 901 A 1 
HETATM 51 O O1P FAD . . . D 4 7.46 -66.287 -26.024 1 76.08 ? O1P FAD 901 A 1 
HETATM 52 O O2P FAD . . . D 4 5.065 -65.442 -26.184 1 83.07 ? O2P FAD 901 A 1 
HETATM 53 O O3P FAD . . . D 4 5.714 -67.054 -27.913 1 76.92 ? O3P FAD 901 A 1 
#
_model_server_stats.io_time_ms              78 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           53 
#