data_5L3G # _model_server_result.job_id abN_DMcT64kuAFTLXJ2hlQ _model_server_result.datetime_utc '2024-11-08 18:16:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l3g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":901}' # _entry.id 5L3G # _exptl.entry_id 5L3G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5L3G _cell.length_a 119.864 _cell.length_b 179.49 _cell.length_c 236.985 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L3G _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C CAI 6F5 1 C 6F5 1 1_555 C N 4FO 2 C 4FO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale2 C C 4FO 2 C 4FO 2 1_555 C N DTH 3 C DTH 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale3 C C DTH 3 C DTH 3 1_555 C N 4FO 4 C 4FO 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale4 C C 4FO 4 C 4FO 4 1_555 C N 4FO 5 C 4FO 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale5 C C 4FO 5 C 4FO 5 1_555 C N DAB 6 C DAB 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? covale ? covale6 C NZ 4FO 5 C 4FO 5 1_555 C C DTH 11 C DTH 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? covale ? covale7 C C DAB 6 C DAB 6 1_555 C N LEU 7 C LEU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale8 C C LEU 8 C LEU 8 1_555 C N DAB 9 C DAB 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? covale ? covale9 C C DAB 9 C DAB 9 1_555 C N DAB 10 C DAB 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.41 ? covale ? covale10 C C DAB 10 C DAB 10 1_555 C N DTH 11 C DTH 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? metalc ? metalc1 A OG SER 167 A SER 289 1_555 E NA NA . A NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.093 ? metalc ? metalc2 A OG1 THR 502 A THR 624 1_555 E NA NA . A NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 158 n n PA O2A FAD sing 159 n n PA O5B FAD sing 160 n n PA O3P FAD sing 161 n n O2A HOA2 FAD sing 162 n n O5B C5B FAD sing 163 n n C5B C4B FAD sing 164 n n C5B H51A FAD sing 165 n n C5B H52A FAD sing 166 n n C4B O4B FAD sing 167 n n C4B C3B FAD sing 168 n n C4B H4B FAD sing 169 n n O4B C1B FAD sing 170 n n C3B O3B FAD sing 171 n n C3B C2B FAD sing 172 n n C3B H3B FAD sing 173 n n O3B HO3A FAD sing 174 n n C2B O2B FAD sing 175 n n C2B C1B FAD sing 176 n n C2B H2B FAD sing 177 n n O2B HO2A FAD sing 178 n n C1B N9A FAD sing 179 n n C1B H1B FAD sing 180 n n N9A C8A FAD sing 181 n y N9A C4A FAD sing 182 n y C8A N7A FAD doub 183 n y C8A H8A FAD sing 184 n n N7A C5A FAD sing 185 n y C5A C6A FAD sing 186 n y C5A C4A FAD doub 187 n y C6A N6A FAD sing 188 n n C6A N1A FAD doub 189 n y N6A H61A FAD sing 190 n n N6A H62A FAD sing 191 n n N1A C2A FAD sing 192 n y C2A N3A FAD doub 193 n y C2A H2A FAD sing 194 n n N3A C4A FAD sing 195 n y N1 C2 FAD sing 196 n n N1 C10 FAD doub 197 n n C2 O2 FAD doub 198 n n C2 N3 FAD sing 199 n n N3 C4 FAD sing 200 n n N3 HN3 FAD sing 201 n n C4 O4 FAD doub 202 n n C4 C4X FAD sing 203 n n C4X N5 FAD doub 204 n n C4X C10 FAD sing 205 n n N5 C5X FAD sing 206 n n C5X C6 FAD doub 207 n y C5X C9A FAD sing 208 n y C6 C7 FAD sing 209 n y C6 H6 FAD sing 210 n n C7 C7M FAD sing 211 n n C7 C8 FAD doub 212 n y C7M HM71 FAD sing 213 n n C7M HM72 FAD sing 214 n n C7M HM73 FAD sing 215 n n C8 C8M FAD sing 216 n n C8 C9 FAD sing 217 n y C8M HM81 FAD sing 218 n n C8M HM82 FAD sing 219 n n C8M HM83 FAD sing 220 n n C9 C9A FAD doub 221 n y C9 H9 FAD sing 222 n n C9A N10 FAD sing 223 n n N10 C10 FAD sing 224 n n N10 C1' FAD sing 225 n n C1' C2' FAD sing 226 n n C1' "H1'1" FAD sing 227 n n C1' "H1'2" FAD sing 228 n n C2' O2' FAD sing 229 n n C2' C3' FAD sing 230 n n C2' H2' FAD sing 231 n n O2' HO2' FAD sing 232 n n C3' O3' FAD sing 233 n n C3' C4' FAD sing 234 n n C3' H3' FAD sing 235 n n O3' HO3' FAD sing 236 n n C4' O4' FAD sing 237 n n C4' C5' FAD sing 238 n n C4' H4' FAD sing 239 n n O4' HO4' FAD sing 240 n n C5' O5' FAD sing 241 n n C5' "H5'1" FAD sing 242 n n C5' "H5'2" FAD sing 243 n n O5' P FAD sing 244 n n P O1P FAD doub 245 n n P O2P FAD sing 246 n n P O3P FAD sing 247 n n O2P HOP2 FAD sing 248 n n # _atom_sites.entry_id 5L3G _atom_sites.fract_transf_matrix[1][1] 0.008343 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005571 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00422 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 FAD A 1 901 901 FAD FAD . E 5 NA A 1 902 902 NA NA . F 5 NA A 1 903 903 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . D 4 6.579 -67.915 -28.88 1 113.82 ? PA FAD 901 A 1 HETATM 2 O O1A FAD . . . D 4 5.7 -68.327 -29.992 1 67.21 ? O1A FAD 901 A 1 HETATM 3 O O2A FAD . . . D 4 7.832 -67.195 -29.247 1 74.52 ? O2A FAD 901 A 1 HETATM 4 O O5B FAD . . . D 4 7.067 -69.179 -28.126 1 93.51 ? O5B FAD 901 A 1 HETATM 5 C C5B FAD . . . D 4 6.185 -70.186 -27.664 1 89.55 ? C5B FAD 901 A 1 HETATM 6 C C4B FAD . . . D 4 6.801 -71.576 -27.941 1 86.26 ? C4B FAD 901 A 1 HETATM 7 O O4B FAD . . . D 4 5.803 -72.403 -27.817 1 83.48 ? O4B FAD 901 A 1 HETATM 8 C C3B FAD . . . D 4 7.255 -71.751 -29.405 1 90.73 ? C3B FAD 901 A 1 HETATM 9 O O3B FAD . . . D 4 8.577 -72.07 -29.572 1 84 ? O3B FAD 901 A 1 HETATM 10 C C2B FAD . . . D 4 6.25 -72.857 -29.899 1 88.74 ? C2B FAD 901 A 1 HETATM 11 O O2B FAD . . . D 4 6.763 -73.659 -31.022 1 93.48 ? O2B FAD 901 A 1 HETATM 12 C C1B FAD . . . D 4 6.113 -73.577 -28.856 1 86.21 ? C1B FAD 901 A 1 HETATM 13 N N9A FAD . . . D 4 4.99 -74.449 -28.922 1 84.19 ? N9A FAD 901 A 1 HETATM 14 C C8A FAD . . . D 4 3.816 -74.212 -29.548 1 80.81 ? C8A FAD 901 A 1 HETATM 15 N N7A FAD . . . D 4 2.964 -75.278 -29.379 1 74.73 ? N7A FAD 901 A 1 HETATM 16 C C5A FAD . . . D 4 3.632 -76.186 -28.61 1 89.21 ? C5A FAD 901 A 1 HETATM 17 C C6A FAD . . . D 4 3.214 -77.422 -28.141 1 91.43 ? C6A FAD 901 A 1 HETATM 18 N N6A FAD . . . D 4 2.005 -78.211 -28.254 1 85.32 ? N6A FAD 901 A 1 HETATM 19 N N1A FAD . . . D 4 4.062 -78.169 -27.36 1 78.16 ? N1A FAD 901 A 1 HETATM 20 C C2A FAD . . . D 4 5.319 -77.678 -27.082 1 80.79 ? C2A FAD 901 A 1 HETATM 21 N N3A FAD . . . D 4 5.759 -76.455 -27.544 1 75.09 ? N3A FAD 901 A 1 HETATM 22 C C4A FAD . . . D 4 4.886 -75.694 -28.316 1 83.37 ? C4A FAD 901 A 1 HETATM 23 N N1 FAD . . . D 4 7.938 -58.315 -31.775 1 92.87 ? N1 FAD 901 A 1 HETATM 24 C C2 FAD . . . D 4 8.791 -57.115 -31.617 1 104.02 ? C2 FAD 901 A 1 HETATM 25 O O2 FAD . . . D 4 8.987 -56.623 -30.494 1 110.93 ? O2 FAD 901 A 1 HETATM 26 N N3 FAD . . . D 4 9.386 -56.5 -32.816 1 102.38 ? N3 FAD 901 A 1 HETATM 27 C C4 FAD . . . D 4 9.153 -57.096 -34.089 1 93.66 ? C4 FAD 901 A 1 HETATM 28 O O4 FAD . . . D 4 9.635 -56.652 -35.157 1 103.83 ? O4 FAD 901 A 1 HETATM 29 C C4X FAD . . . D 4 8.3 -58.291 -34.212 1 83.77 ? C4X FAD 901 A 1 HETATM 30 N N5 FAD . . . D 4 8.136 -58.814 -35.493 1 99.12 ? N5 FAD 901 A 1 HETATM 31 C C5X FAD . . . D 4 7.329 -60.017 -35.711 1 106.47 ? C5X FAD 901 A 1 HETATM 32 C C6 FAD . . . D 4 7.168 -60.52 -37.001 1 106.9 ? C6 FAD 901 A 1 HETATM 33 C C7 FAD . . . D 4 6.404 -61.665 -37.193 1 115.07 ? C7 FAD 901 A 1 HETATM 34 C C7M FAD . . . D 4 6.339 -62.059 -38.656 1 107.63 ? C7M FAD 901 A 1 HETATM 35 C C8 FAD . . . D 4 5.812 -62.29 -36.103 1 120.52 ? C8 FAD 901 A 1 HETATM 36 C C8M FAD . . . D 4 4.993 -63.548 -36.378 1 104.87 ? C8M FAD 901 A 1 HETATM 37 C C9 FAD . . . D 4 5.966 -61.784 -34.805 1 116.88 ? C9 FAD 901 A 1 HETATM 38 C C9A FAD . . . D 4 6.727 -60.639 -34.626 1 110.63 ? C9A FAD 901 A 1 HETATM 39 N N10 FAD . . . D 4 6.902 -60.104 -33.288 1 105.72 ? N10 FAD 901 A 1 HETATM 40 C C10 FAD . . . D 4 7.692 -58.911 -33.076 1 93.78 ? C10 FAD 901 A 1 HETATM 41 C C1' FAD . . . D 4 6.236 -60.846 -32.233 1 102.5 ? C1' FAD 901 A 1 HETATM 42 C C2' FAD . . . D 4 7.25 -61.434 -31.24 1 99.49 ? C2' FAD 901 A 1 HETATM 43 O O2' FAD . . . D 4 8.15 -62.151 -31.936 1 93.72 ? O2' FAD 901 A 1 HETATM 44 C C3' FAD . . . D 4 6.448 -62.293 -30.271 1 97.99 ? C3' FAD 901 A 1 HETATM 45 O O3' FAD . . . D 4 5.678 -61.422 -29.474 1 87.93 ? O3' FAD 901 A 1 HETATM 46 C C4' FAD . . . D 4 7.316 -63.125 -29.344 1 100.52 ? C4' FAD 901 A 1 HETATM 47 O O4' FAD . . . D 4 8.277 -63.921 -29.969 1 99.28 ? O4' FAD 901 A 1 HETATM 48 C C5' FAD . . . D 4 6.304 -64.016 -28.633 1 99.73 ? C5' FAD 901 A 1 HETATM 49 O O5' FAD . . . D 4 7.035 -64.769 -27.706 1 101.44 ? O5' FAD 901 A 1 HETATM 50 P P FAD . . . D 4 6.309 -65.932 -26.939 1 89.66 ? P FAD 901 A 1 HETATM 51 O O1P FAD . . . D 4 7.46 -66.287 -26.024 1 76.08 ? O1P FAD 901 A 1 HETATM 52 O O2P FAD . . . D 4 5.065 -65.442 -26.184 1 83.07 ? O2P FAD 901 A 1 HETATM 53 O O3P FAD . . . D 4 5.714 -67.054 -27.913 1 76.92 ? O3P FAD 901 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 53 #