data_5L3G # _model_server_result.job_id 8buADERJ3vUPdPxfpZmq6A _model_server_result.datetime_utc '2024-11-27 02:20:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l3g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":903}' # _entry.id 5L3G # _exptl.entry_id 5L3G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5L3G _cell.length_a 119.864 _cell.length_b 179.49 _cell.length_c 236.985 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L3G _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C CAI 6F5 1 C 6F5 1 1_555 C N 4FO 2 C 4FO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale2 C C 4FO 2 C 4FO 2 1_555 C N DTH 3 C DTH 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale3 C C DTH 3 C DTH 3 1_555 C N 4FO 4 C 4FO 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale4 C C 4FO 4 C 4FO 4 1_555 C N 4FO 5 C 4FO 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale5 C C 4FO 5 C 4FO 5 1_555 C N DAB 6 C DAB 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? covale ? covale6 C NZ 4FO 5 C 4FO 5 1_555 C C DTH 11 C DTH 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? covale ? covale7 C C DAB 6 C DAB 6 1_555 C N LEU 7 C LEU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale8 C C LEU 8 C LEU 8 1_555 C N DAB 9 C DAB 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? covale ? covale9 C C DAB 9 C DAB 9 1_555 C N DAB 10 C DAB 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.41 ? covale ? covale10 C C DAB 10 C DAB 10 1_555 C N DTH 11 C DTH 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? metalc ? metalc1 A OG SER 167 A SER 289 1_555 E NA NA . A NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.093 ? metalc ? metalc2 A OG1 THR 502 A THR 624 1_555 E NA NA . A NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5L3G _atom_sites.fract_transf_matrix[1][1] 0.008343 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005571 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00422 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 FAD A 1 901 901 FAD FAD . E 5 NA A 1 902 902 NA NA . F 5 NA A 1 903 903 NA NA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x -10.706 _atom_site.Cartn_y -48.901 _atom_site.Cartn_z -45.239 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 88.57 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 903 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 671 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 1 #