data_5L3H # _model_server_result.job_id foefYF11VFoOD9r6tD4Psw _model_server_result.datetime_utc '2024-12-23 09:47:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l3h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":214}' # _entry.id 5L3H # _exptl.entry_id 5L3H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5L3H _cell.length_a 78.832 _cell.length_b 78.832 _cell.length_c 37.021 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L3H _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A N LYS 1 A LYS 1 1_555 P PT PT . A PT 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc2 A NH1 ARG 14 A ARG 14 1_555 E PT PT . A PT 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc3 A ND1 HIS 15 A HIS 15 1_555 D PT PT . A PT 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc4 A NE2 HIS 15 A HIS 15 1_555 E PT PT . A PT 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc5 A NZ LYS 33 A LYS 33 1_555 R PT PT . A PT 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc6 A O SER 60 A SER 60 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc7 A O CYS 64 A CYS 64 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc8 A OG SER 72 A SER 72 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc9 A O ARG 73 A ARG 73 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc10 A NZ LYS 96 A LYS 96 1_555 Q PT PT . A PT 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc11 C NA NA . A NA 202 1_555 S O HOH . A HOH 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc12 C NA NA . A NA 202 1_555 S O HOH . A HOH 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc13 D PT PT . A PT 203 1_555 H N NH3 . A NH3 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc14 D PT PT . A PT 203 1_555 I N NH3 . A NH3 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc15 E PT PT . A PT 204 1_555 J N NH3 . A NH3 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 5L3H _atom_sites.fract_transf_matrix[1][1] 0.012685 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012685 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027012 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 201 205 CL CL . C 3 NA A 1 202 1 NA NA . D 4 PT A 1 203 1 PT PT . E 4 PT A 1 204 1 PT PT . F 2 CL A 1 205 1 CL CL . G 2 CL A 1 206 1 CL CL . H 5 NH3 A 1 207 1 NH3 NH3 . I 5 NH3 A 1 208 2 NH3 NH3 . J 5 NH3 A 1 209 3 NH3 NH3 . K 2 CL A 1 210 1 CL CL . L 2 CL A 1 211 1 CL CL . M 2 CL A 1 212 1 CL CL . N 2 CL A 1 213 1 CL CL . O 6 DMS A 1 214 1 DMS DMS . P 4 PT A 1 215 1 PT PT . Q 4 PT A 1 216 1 PT PT . R 4 PT A 1 217 1 PT PT . S 7 HOH A 1 301 2 HOH HOH . S 7 HOH A 2 302 362 HOH HOH . S 7 HOH A 3 303 5 HOH HOH . S 7 HOH A 4 304 22 HOH HOH . S 7 HOH A 5 305 336 HOH HOH . S 7 HOH A 6 306 349 HOH HOH . S 7 HOH A 7 307 343 HOH HOH . S 7 HOH A 8 308 12 HOH HOH . S 7 HOH A 9 309 311 HOH HOH . S 7 HOH A 10 310 317 HOH HOH . S 7 HOH A 11 311 352 HOH HOH . S 7 HOH A 12 312 20 HOH HOH . S 7 HOH A 13 313 333 HOH HOH . S 7 HOH A 14 314 332 HOH HOH . S 7 HOH A 15 315 322 HOH HOH . S 7 HOH A 16 316 6 HOH HOH . S 7 HOH A 17 317 324 HOH HOH . S 7 HOH A 18 318 313 HOH HOH . S 7 HOH A 19 319 354 HOH HOH . S 7 HOH A 20 320 320 HOH HOH . S 7 HOH A 21 321 325 HOH HOH . S 7 HOH A 22 322 338 HOH HOH . S 7 HOH A 23 323 337 HOH HOH . S 7 HOH A 24 324 11 HOH HOH . S 7 HOH A 25 325 13 HOH HOH . S 7 HOH A 26 326 329 HOH HOH . S 7 HOH A 27 327 308 HOH HOH . S 7 HOH A 28 328 305 HOH HOH . S 7 HOH A 29 329 303 HOH HOH . S 7 HOH A 30 330 310 HOH HOH . S 7 HOH A 31 331 334 HOH HOH . S 7 HOH A 32 332 316 HOH HOH . S 7 HOH A 33 333 306 HOH HOH . S 7 HOH A 34 334 9 HOH HOH . S 7 HOH A 35 335 328 HOH HOH . S 7 HOH A 36 336 341 HOH HOH . S 7 HOH A 37 337 361 HOH HOH . S 7 HOH A 38 338 23 HOH HOH . S 7 HOH A 39 339 307 HOH HOH . S 7 HOH A 40 340 17 HOH HOH . S 7 HOH A 41 341 355 HOH HOH . S 7 HOH A 42 342 335 HOH HOH . S 7 HOH A 43 343 326 HOH HOH . S 7 HOH A 44 344 323 HOH HOH . S 7 HOH A 45 345 331 HOH HOH . S 7 HOH A 46 346 309 HOH HOH . S 7 HOH A 47 347 357 HOH HOH . S 7 HOH A 48 348 315 HOH HOH . S 7 HOH A 49 349 8 HOH HOH . S 7 HOH A 50 350 360 HOH HOH . S 7 HOH A 51 351 18 HOH HOH . S 7 HOH A 52 352 312 HOH HOH . S 7 HOH A 53 353 353 HOH HOH . S 7 HOH A 54 354 350 HOH HOH . S 7 HOH A 55 355 358 HOH HOH . S 7 HOH A 56 356 327 HOH HOH . S 7 HOH A 57 357 318 HOH HOH . S 7 HOH A 58 358 304 HOH HOH . S 7 HOH A 59 359 356 HOH HOH . S 7 HOH A 60 360 319 HOH HOH . S 7 HOH A 61 361 345 HOH HOH . S 7 HOH A 62 362 10 HOH HOH . S 7 HOH A 63 363 347 HOH HOH . S 7 HOH A 64 364 7 HOH HOH . S 7 HOH A 65 365 359 HOH HOH . S 7 HOH A 66 366 15 HOH HOH . S 7 HOH A 67 367 351 HOH HOH . S 7 HOH A 68 368 1 HOH HOH . S 7 HOH A 69 369 330 HOH HOH . S 7 HOH A 70 370 19 HOH HOH . S 7 HOH A 71 371 16 HOH HOH . S 7 HOH A 72 372 3 HOH HOH . S 7 HOH A 73 373 340 HOH HOH . S 7 HOH A 74 374 14 HOH HOH . S 7 HOH A 75 375 21 HOH HOH . S 7 HOH A 76 376 4 HOH HOH . S 7 HOH A 77 377 346 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . O 6 -22.487 3.669 -2.858 1 21.1 ? S DMS 214 A 1 HETATM 2 O O DMS . . . O 6 -21.09 4.031 -2.475 1 14.39 ? O DMS 214 A 1 HETATM 3 C C1 DMS . . . O 6 -23.33 5.103 -3.582 1 15.38 ? C1 DMS 214 A 1 HETATM 4 C C2 DMS . . . O 6 -22.451 2.596 -4.312 1 12.66 ? C2 DMS 214 A 1 HETATM 5 H H11 DMS . . . O 6 -23.437 5.858 -2.848 1 18.45 ? H11 DMS 214 A 1 HETATM 6 H H12 DMS . . . O 6 -24.287 4.811 -3.929 1 18.45 ? H12 DMS 214 A 1 HETATM 7 H H13 DMS . . . O 6 -22.76 5.476 -4.393 1 18.45 ? H13 DMS 214 A 1 HETATM 8 H H21 DMS . . . O 6 -21.983 1.679 -4.063 1 15.19 ? H21 DMS 214 A 1 HETATM 9 H H22 DMS . . . O 6 -21.907 3.07 -5.088 1 15.19 ? H22 DMS 214 A 1 HETATM 10 H H23 DMS . . . O 6 -23.441 2.409 -4.638 1 15.19 ? H23 DMS 214 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 10 #