data_5L3H
#
_model_server_result.job_id            DPjMJY8CLuqWoXxTqWWiMQ 
_model_server_result.datetime_utc      '2024-12-23 10:07:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5l3h 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":216}' 
#
_entry.id    5L3H 
#
_exptl.entry_id    5L3H 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              195.078 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PLATINUM (II) ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5L3H 
_cell.length_a            78.832 
_cell.length_b            78.832 
_cell.length_c            37.021 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5L3H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 P N N 
? 4 Q N N 
? 4 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc1 A N LYS 1 A LYS 1 1_555 P PT PT . A PT 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
metalc ? metalc2 A NH1 ARG 14 A ARG 14 1_555 E PT PT . A PT 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc3 A ND1 HIS 15 A HIS 15 1_555 D PT PT . A PT 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc4 A NE2 HIS 15 A HIS 15 1_555 E PT PT . A PT 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc5 A NZ LYS 33 A LYS 33 1_555 R PT PT . A PT 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? 
metalc ? metalc6 A O SER 60 A SER 60 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc7 A O CYS 64 A CYS 64 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? 
metalc ? metalc8 A OG SER 72 A SER 72 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? 
metalc ? metalc9 A O ARG 73 A ARG 73 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? 
metalc ? metalc10 A NZ LYS 96 A LYS 96 1_555 Q PT PT . A PT 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc11 C NA NA . A NA 202 1_555 S O HOH . A HOH 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc12 C NA NA . A NA 202 1_555 S O HOH . A HOH 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc13 D PT PT . A PT 203 1_555 H N NH3 . A NH3 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc14 D PT PT . A PT 203 1_555 I N NH3 . A NH3 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc15 E PT PT . A PT 204 1_555 J N NH3 . A NH3 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
#
_chem_comp.formula           'Pt 2' 
_chem_comp.formula_weight    195.078 
_chem_comp.id                PT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PLATINUM (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5L3H 
_atom_sites.fract_transf_matrix[1][1]    0.012685 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012685 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.027012 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 201 205 CL CL . 
C 3 NA A 1 202 1 NA NA . 
D 4 PT A 1 203 1 PT PT . 
E 4 PT A 1 204 1 PT PT . 
F 2 CL A 1 205 1 CL CL . 
G 2 CL A 1 206 1 CL CL . 
H 5 NH3 A 1 207 1 NH3 NH3 . 
I 5 NH3 A 1 208 2 NH3 NH3 . 
J 5 NH3 A 1 209 3 NH3 NH3 . 
K 2 CL A 1 210 1 CL CL . 
L 2 CL A 1 211 1 CL CL . 
M 2 CL A 1 212 1 CL CL . 
N 2 CL A 1 213 1 CL CL . 
O 6 DMS A 1 214 1 DMS DMS . 
P 4 PT A 1 215 1 PT PT . 
Q 4 PT A 1 216 1 PT PT . 
R 4 PT A 1 217 1 PT PT . 
S 7 HOH A 1 301 2 HOH HOH . 
S 7 HOH A 2 302 362 HOH HOH . 
S 7 HOH A 3 303 5 HOH HOH . 
S 7 HOH A 4 304 22 HOH HOH . 
S 7 HOH A 5 305 336 HOH HOH . 
S 7 HOH A 6 306 349 HOH HOH . 
S 7 HOH A 7 307 343 HOH HOH . 
S 7 HOH A 8 308 12 HOH HOH . 
S 7 HOH A 9 309 311 HOH HOH . 
S 7 HOH A 10 310 317 HOH HOH . 
S 7 HOH A 11 311 352 HOH HOH . 
S 7 HOH A 12 312 20 HOH HOH . 
S 7 HOH A 13 313 333 HOH HOH . 
S 7 HOH A 14 314 332 HOH HOH . 
S 7 HOH A 15 315 322 HOH HOH . 
S 7 HOH A 16 316 6 HOH HOH . 
S 7 HOH A 17 317 324 HOH HOH . 
S 7 HOH A 18 318 313 HOH HOH . 
S 7 HOH A 19 319 354 HOH HOH . 
S 7 HOH A 20 320 320 HOH HOH . 
S 7 HOH A 21 321 325 HOH HOH . 
S 7 HOH A 22 322 338 HOH HOH . 
S 7 HOH A 23 323 337 HOH HOH . 
S 7 HOH A 24 324 11 HOH HOH . 
S 7 HOH A 25 325 13 HOH HOH . 
S 7 HOH A 26 326 329 HOH HOH . 
S 7 HOH A 27 327 308 HOH HOH . 
S 7 HOH A 28 328 305 HOH HOH . 
S 7 HOH A 29 329 303 HOH HOH . 
S 7 HOH A 30 330 310 HOH HOH . 
S 7 HOH A 31 331 334 HOH HOH . 
S 7 HOH A 32 332 316 HOH HOH . 
S 7 HOH A 33 333 306 HOH HOH . 
S 7 HOH A 34 334 9 HOH HOH . 
S 7 HOH A 35 335 328 HOH HOH . 
S 7 HOH A 36 336 341 HOH HOH . 
S 7 HOH A 37 337 361 HOH HOH . 
S 7 HOH A 38 338 23 HOH HOH . 
S 7 HOH A 39 339 307 HOH HOH . 
S 7 HOH A 40 340 17 HOH HOH . 
S 7 HOH A 41 341 355 HOH HOH . 
S 7 HOH A 42 342 335 HOH HOH . 
S 7 HOH A 43 343 326 HOH HOH . 
S 7 HOH A 44 344 323 HOH HOH . 
S 7 HOH A 45 345 331 HOH HOH . 
S 7 HOH A 46 346 309 HOH HOH . 
S 7 HOH A 47 347 357 HOH HOH . 
S 7 HOH A 48 348 315 HOH HOH . 
S 7 HOH A 49 349 8 HOH HOH . 
S 7 HOH A 50 350 360 HOH HOH . 
S 7 HOH A 51 351 18 HOH HOH . 
S 7 HOH A 52 352 312 HOH HOH . 
S 7 HOH A 53 353 353 HOH HOH . 
S 7 HOH A 54 354 350 HOH HOH . 
S 7 HOH A 55 355 358 HOH HOH . 
S 7 HOH A 56 356 327 HOH HOH . 
S 7 HOH A 57 357 318 HOH HOH . 
S 7 HOH A 58 358 304 HOH HOH . 
S 7 HOH A 59 359 356 HOH HOH . 
S 7 HOH A 60 360 319 HOH HOH . 
S 7 HOH A 61 361 345 HOH HOH . 
S 7 HOH A 62 362 10 HOH HOH . 
S 7 HOH A 63 363 347 HOH HOH . 
S 7 HOH A 64 364 7 HOH HOH . 
S 7 HOH A 65 365 359 HOH HOH . 
S 7 HOH A 66 366 15 HOH HOH . 
S 7 HOH A 67 367 351 HOH HOH . 
S 7 HOH A 68 368 1 HOH HOH . 
S 7 HOH A 69 369 330 HOH HOH . 
S 7 HOH A 70 370 19 HOH HOH . 
S 7 HOH A 71 371 16 HOH HOH . 
S 7 HOH A 72 372 3 HOH HOH . 
S 7 HOH A 73 373 340 HOH HOH . 
S 7 HOH A 74 374 14 HOH HOH . 
S 7 HOH A 75 375 21 HOH HOH . 
S 7 HOH A 76 376 4 HOH HOH . 
S 7 HOH A 77 377 346 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           PT 
_atom_site.label_atom_id         PT 
_atom_site.label_comp_id         PT 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         Q 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -15.583 
_atom_site.Cartn_y               -12.896 
_atom_site.Cartn_z               -3.728 
_atom_site.occupancy             0.15 
_atom_site.B_iso_or_equiv        30.46 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          PT 
_atom_site.auth_comp_id          PT 
_atom_site.auth_seq_id           216 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           426 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#