data_5L3Q
#
_model_server_result.job_id            FGZJO81LTHkgLpuki1lzlQ 
_model_server_result.datetime_utc      '2024-11-08 11:36:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5l3q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":706}' 
#
_entry.id    5L3Q 
#
_exptl.entry_id    5L3Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5L3Q 
_cell.length_a            241.394 
_cell.length_b            241.394 
_cell.length_c            241.394 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5L3Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        197 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,K,L,M,N,O,P,BA,CA 1 1 
C,D,Q,R,S,T,U,V,W,X,Y,Z,AA,DA,EA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 O N N 
? 5 T N N 
? 5 Z N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 121 A THR 115 1_555 G MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? 
metalc ? metalc2 F O2G GNP . A GNP 502 1_555 G MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? 
metalc ? metalc3 F O1B GNP . A GNP 502 1_555 G MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? 
metalc ? metalc4 G MG MG . A MG 503 1_555 BA O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc5 G MG MG . A MG 503 1_555 BA O HOH . A HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc6 G MG MG . A MG 503 1_555 BA O HOH . A HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc7 B OG SER 432 B SER 432 1_555 O MG MG . B MG 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? 
metalc ? metalc8 N O2G GNP . B GNP 705 1_555 O MG MG . B MG 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc9 N O2B GNP . B GNP 705 1_555 O MG MG . B MG 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc10 O MG MG . B MG 706 1_555 CA O HOH . B HOH 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc11 O MG MG . B MG 706 1_555 CA O HOH . B HOH 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc12 O MG MG . B MG 706 1_555 CA O HOH . B HOH 819 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc13 C OG1 THR 121 C THR 115 1_555 T MG MG . C MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc14 S O1G GNP . C GNP 503 1_555 T MG MG . C MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc15 S O1B GNP . C GNP 503 1_555 T MG MG . C MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc16 T MG MG . C MG 504 1_555 DA O HOH . C HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc17 T MG MG . C MG 504 1_555 DA O HOH . C HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc18 T MG MG . C MG 504 1_555 DA O HOH . C HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc19 D OG SER 432 D SER 432 1_555 Z MG MG . D MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
metalc ? metalc20 Y O1G GNP . D GNP 703 1_555 Z MG MG . D MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc21 Y O1B GNP . D GNP 703 1_555 Z MG MG . D MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc22 Z MG MG . D MG 704 1_555 EA O HOH . D HOH 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
metalc ? metalc23 Z MG MG . D MG 704 1_555 EA O HOH . D HOH 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc24 Z MG MG . D MG 704 1_555 EA O HOH . D HOH 812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5L3Q 
_atom_sites.fract_transf_matrix[1][1]    0.004143 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004143 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004143 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 SO4 A 1 501 7 SO4 SO4 . 
F 4 GNP A 1 502 1 GNP GNP . 
G 5 MG A 1 503 1 MG MG . 
H 6 GOL A 1 504 1 GOL GOL . 
I 7 AMP A 1 505 1 AMP AMP . 
J 3 SO4 B 1 701 2 SO4 SO4 . 
K 3 SO4 B 1 702 3 SO4 SO4 . 
L 3 SO4 B 1 703 5 SO4 SO4 . 
M 3 SO4 B 1 704 9 SO4 SO4 . 
N 4 GNP B 1 705 2 GNP GNP . 
O 5 MG B 1 706 2 MG MG . 
P 6 GOL B 1 707 4 GOL GOL . 
Q 3 SO4 C 1 501 6 SO4 SO4 . 
R 3 SO4 C 1 502 8 SO4 SO4 . 
S 4 GNP C 1 503 3 GNP GNP . 
T 5 MG C 1 504 3 MG MG . 
U 6 GOL C 1 505 2 GOL GOL . 
V 7 AMP C 1 506 1 AMP AMP . 
W 3 SO4 D 1 701 1 SO4 SO4 . 
X 3 SO4 D 1 702 4 SO4 SO4 . 
Y 4 GNP D 1 703 4 GNP GNP . 
Z 5 MG D 1 704 4 MG MG . 
AA 6 GOL D 1 705 3 GOL GOL . 
BA 8 HOH A 1 601 1 HOH HOH . 
BA 8 HOH A 2 602 59 HOH HOH . 
BA 8 HOH A 3 603 29 HOH HOH . 
BA 8 HOH A 4 604 11 HOH HOH . 
BA 8 HOH A 5 605 27 HOH HOH . 
BA 8 HOH A 6 606 55 HOH HOH . 
BA 8 HOH A 7 607 22 HOH HOH . 
BA 8 HOH A 8 608 8 HOH HOH . 
BA 8 HOH A 9 609 2 HOH HOH . 
BA 8 HOH A 10 610 26 HOH HOH . 
BA 8 HOH A 11 611 132 HOH HOH . 
BA 8 HOH A 12 612 12 HOH HOH . 
BA 8 HOH A 13 613 87 HOH HOH . 
BA 8 HOH A 14 614 110 HOH HOH . 
BA 8 HOH A 15 615 104 HOH HOH . 
BA 8 HOH A 16 616 107 HOH HOH . 
BA 8 HOH A 17 617 43 HOH HOH . 
BA 8 HOH A 18 618 70 HOH HOH . 
BA 8 HOH A 19 619 72 HOH HOH . 
BA 8 HOH A 20 620 81 HOH HOH . 
BA 8 HOH A 21 621 76 HOH HOH . 
BA 8 HOH A 22 622 46 HOH HOH . 
BA 8 HOH A 23 623 133 HOH HOH . 
BA 8 HOH A 24 624 30 HOH HOH . 
BA 8 HOH A 25 625 82 HOH HOH . 
BA 8 HOH A 26 626 125 HOH HOH . 
BA 8 HOH A 27 627 13 HOH HOH . 
BA 8 HOH A 28 628 44 HOH HOH . 
BA 8 HOH A 29 629 109 HOH HOH . 
BA 8 HOH A 30 630 61 HOH HOH . 
BA 8 HOH A 31 631 60 HOH HOH . 
CA 8 HOH B 1 801 116 HOH HOH . 
CA 8 HOH B 2 802 79 HOH HOH . 
CA 8 HOH B 3 803 115 HOH HOH . 
CA 8 HOH B 4 804 3 HOH HOH . 
CA 8 HOH B 5 805 90 HOH HOH . 
CA 8 HOH B 6 806 10 HOH HOH . 
CA 8 HOH B 7 807 57 HOH HOH . 
CA 8 HOH B 8 808 80 HOH HOH . 
CA 8 HOH B 9 809 17 HOH HOH . 
CA 8 HOH B 10 810 33 HOH HOH . 
CA 8 HOH B 11 811 63 HOH HOH . 
CA 8 HOH B 12 812 51 HOH HOH . 
CA 8 HOH B 13 813 42 HOH HOH . 
CA 8 HOH B 14 814 65 HOH HOH . 
CA 8 HOH B 15 815 100 HOH HOH . 
CA 8 HOH B 16 816 18 HOH HOH . 
CA 8 HOH B 17 817 54 HOH HOH . 
CA 8 HOH B 18 818 9 HOH HOH . 
CA 8 HOH B 19 819 89 HOH HOH . 
CA 8 HOH B 20 820 74 HOH HOH . 
CA 8 HOH B 21 821 36 HOH HOH . 
CA 8 HOH B 22 822 73 HOH HOH . 
CA 8 HOH B 23 823 38 HOH HOH . 
CA 8 HOH B 24 824 98 HOH HOH . 
CA 8 HOH B 25 825 48 HOH HOH . 
CA 8 HOH B 26 826 99 HOH HOH . 
CA 8 HOH B 27 827 105 HOH HOH . 
CA 8 HOH B 28 828 78 HOH HOH . 
CA 8 HOH B 29 829 106 HOH HOH . 
CA 8 HOH B 30 830 28 HOH HOH . 
CA 8 HOH B 31 831 53 HOH HOH . 
CA 8 HOH B 32 832 71 HOH HOH . 
CA 8 HOH B 33 833 40 HOH HOH . 
CA 8 HOH B 34 834 97 HOH HOH . 
CA 8 HOH B 35 835 77 HOH HOH . 
CA 8 HOH B 36 836 102 HOH HOH . 
CA 8 HOH B 37 837 37 HOH HOH . 
CA 8 HOH B 38 838 129 HOH HOH . 
CA 8 HOH B 39 839 114 HOH HOH . 
CA 8 HOH B 40 840 108 HOH HOH . 
CA 8 HOH B 41 841 137 HOH HOH . 
CA 8 HOH B 42 842 112 HOH HOH . 
DA 8 HOH C 1 601 5 HOH HOH . 
DA 8 HOH C 2 602 7 HOH HOH . 
DA 8 HOH C 3 603 4 HOH HOH . 
DA 8 HOH C 4 604 56 HOH HOH . 
DA 8 HOH C 5 605 20 HOH HOH . 
DA 8 HOH C 6 606 127 HOH HOH . 
DA 8 HOH C 7 607 64 HOH HOH . 
DA 8 HOH C 8 608 24 HOH HOH . 
DA 8 HOH C 9 609 75 HOH HOH . 
DA 8 HOH C 10 610 58 HOH HOH . 
DA 8 HOH C 11 611 25 HOH HOH . 
DA 8 HOH C 12 612 21 HOH HOH . 
DA 8 HOH C 13 613 119 HOH HOH . 
DA 8 HOH C 14 614 93 HOH HOH . 
DA 8 HOH C 15 615 34 HOH HOH . 
DA 8 HOH C 16 616 69 HOH HOH . 
DA 8 HOH C 17 617 94 HOH HOH . 
DA 8 HOH C 18 618 135 HOH HOH . 
DA 8 HOH C 19 619 39 HOH HOH . 
DA 8 HOH C 20 620 52 HOH HOH . 
EA 8 HOH D 1 801 31 HOH HOH . 
EA 8 HOH D 2 802 14 HOH HOH . 
EA 8 HOH D 3 803 16 HOH HOH . 
EA 8 HOH D 4 804 88 HOH HOH . 
EA 8 HOH D 5 805 67 HOH HOH . 
EA 8 HOH D 6 806 95 HOH HOH . 
EA 8 HOH D 7 807 83 HOH HOH . 
EA 8 HOH D 8 808 23 HOH HOH . 
EA 8 HOH D 9 809 134 HOH HOH . 
EA 8 HOH D 10 810 68 HOH HOH . 
EA 8 HOH D 11 811 85 HOH HOH . 
EA 8 HOH D 12 812 6 HOH HOH . 
EA 8 HOH D 13 813 32 HOH HOH . 
EA 8 HOH D 14 814 15 HOH HOH . 
EA 8 HOH D 15 815 50 HOH HOH . 
EA 8 HOH D 16 816 86 HOH HOH . 
EA 8 HOH D 17 817 66 HOH HOH . 
EA 8 HOH D 18 818 45 HOH HOH . 
EA 8 HOH D 19 819 49 HOH HOH . 
EA 8 HOH D 20 820 92 HOH HOH . 
EA 8 HOH D 21 821 136 HOH HOH . 
EA 8 HOH D 22 822 118 HOH HOH . 
EA 8 HOH D 23 823 62 HOH HOH . 
EA 8 HOH D 24 824 35 HOH HOH . 
EA 8 HOH D 25 825 122 HOH HOH . 
EA 8 HOH D 26 826 84 HOH HOH . 
EA 8 HOH D 27 827 41 HOH HOH . 
EA 8 HOH D 28 828 19 HOH HOH . 
EA 8 HOH D 29 829 101 HOH HOH . 
EA 8 HOH D 30 830 91 HOH HOH . 
EA 8 HOH D 31 831 96 HOH HOH . 
EA 8 HOH D 32 832 47 HOH HOH . 
EA 8 HOH D 33 833 111 HOH HOH . 
EA 8 HOH D 34 834 113 HOH HOH . 
EA 8 HOH D 35 835 103 HOH HOH . 
EA 8 HOH D 36 836 117 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         O 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               54.203 
_atom_site.Cartn_y               92.906 
_atom_site.Cartn_z               31.915 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        28.75 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           706 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           236 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#