data_5L3R
#
_model_server_result.job_id            a4j5vq04UgGqB38qbLjJWA 
_model_server_result.datetime_utc      '2024-11-08 11:34:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5l3r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":403}' 
#
_entry.id    5L3R 
#
_exptl.entry_id    5L3R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.14 
_cell.angle_gamma         90 
_cell.entry_id            5L3R 
_cell.length_a            89.79 
_cell.length_b            74.75 
_cell.length_c            107.21 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5L3R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,O,P 1 1 
C,D,J,K,L,M,N,Q,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 120 A THR 190 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? 
metalc ? metalc2 A OD2 ASP 143 A ASP 213 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? 
metalc ? metalc3 E O3G GCP . A GCP 401 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? 
metalc ? metalc4 F MG MG . A MG 402 1_555 O O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc5 F MG MG . A MG 402 1_555 O O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc6 F MG MG . A MG 402 1_555 O O HOH . A HOH 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? 
metalc ? metalc7 B OG1 THR 105 B THR 178 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
metalc ? metalc8 G O1G GCP . B GCP 401 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc9 G O1B GCP . B GCP 401 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc10 H MG MG . B MG 402 1_555 P O HOH . B HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc11 H MG MG . B MG 402 1_555 P O HOH . B HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc12 H MG MG . B MG 402 1_555 P O HOH . B HOH 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc13 C OG1 THR 120 C THR 190 1_555 J MG MG . C MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc14 J MG MG . C MG 401 1_555 K O1B GCP . C GCP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? 
metalc ? metalc15 J MG MG . C MG 401 1_555 K O1G GCP . C GCP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? 
metalc ? metalc16 J MG MG . C MG 401 1_555 Q O HOH . C HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
metalc ? metalc17 J MG MG . C MG 401 1_555 Q O HOH . C HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
metalc ? metalc18 J MG MG . C MG 401 1_555 Q O HOH . C HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc19 D OG1 THR 105 D THR 178 1_555 L MG MG . D MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc20 L MG MG . D MG 401 1_555 M O3G GCP . D GCP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc21 L MG MG . D MG 401 1_555 M O2B GCP . D GCP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc22 L MG MG . D MG 401 1_555 R O HOH . D HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? 
metalc ? metalc23 L MG MG . D MG 401 1_555 R O HOH . D HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc24 L MG MG . D MG 401 1_555 R O HOH . D HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 181 n n 
C1 C2 GOL sing 182 n n 
C1 H11 GOL sing 183 n n 
C1 H12 GOL sing 184 n n 
O1 HO1 GOL sing 185 n n 
C2 O2 GOL sing 186 n n 
C2 C3 GOL sing 187 n n 
C2 H2 GOL sing 188 n n 
O2 HO2 GOL sing 189 n n 
C3 O3 GOL sing 190 n n 
C3 H31 GOL sing 191 n n 
C3 H32 GOL sing 192 n n 
O3 HO3 GOL sing 193 n n 
#
_atom_sites.entry_id                     5L3R 
_atom_sites.fract_transf_matrix[1][1]    0.011137 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000222 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013378 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009329 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GCP A 1 401 1 GCP GCP . 
F 4 MG A 1 402 2 MG MG . 
G 3 GCP B 1 401 1 GCP GCP . 
H 4 MG B 1 402 2 MG MG . 
I 5 GOL B 1 403 1 GOL GOL . 
J 4 MG C 1 401 2 MG MG . 
K 3 GCP C 1 402 1 GCP GCP . 
L 4 MG D 1 401 2 MG MG . 
M 3 GCP D 1 402 1 GCP GCP . 
N 5 GOL D 1 403 2 GOL GOL . 
O 6 HOH A 1 501 5 HOH HOH . 
O 6 HOH A 2 502 98 HOH HOH . 
O 6 HOH A 3 503 2 HOH HOH . 
O 6 HOH A 4 504 18 HOH HOH . 
O 6 HOH A 5 505 46 HOH HOH . 
O 6 HOH A 6 506 136 HOH HOH . 
O 6 HOH A 7 507 63 HOH HOH . 
O 6 HOH A 8 508 50 HOH HOH . 
O 6 HOH A 9 509 44 HOH HOH . 
O 6 HOH A 10 510 107 HOH HOH . 
O 6 HOH A 11 511 39 HOH HOH . 
O 6 HOH A 12 512 117 HOH HOH . 
O 6 HOH A 13 513 16 HOH HOH . 
O 6 HOH A 14 514 140 HOH HOH . 
O 6 HOH A 15 515 17 HOH HOH . 
O 6 HOH A 16 516 30 HOH HOH . 
O 6 HOH A 17 517 114 HOH HOH . 
O 6 HOH A 18 518 97 HOH HOH . 
O 6 HOH A 19 519 35 HOH HOH . 
O 6 HOH A 20 520 59 HOH HOH . 
O 6 HOH A 21 521 99 HOH HOH . 
O 6 HOH A 22 522 32 HOH HOH . 
O 6 HOH A 23 523 116 HOH HOH . 
O 6 HOH A 24 524 11 HOH HOH . 
O 6 HOH A 25 525 73 HOH HOH . 
O 6 HOH A 26 526 137 HOH HOH . 
O 6 HOH A 27 527 65 HOH HOH . 
O 6 HOH A 28 528 75 HOH HOH . 
O 6 HOH A 29 529 37 HOH HOH . 
O 6 HOH A 30 530 4 HOH HOH . 
O 6 HOH A 31 531 23 HOH HOH . 
O 6 HOH A 32 532 57 HOH HOH . 
O 6 HOH A 33 533 33 HOH HOH . 
O 6 HOH A 34 534 51 HOH HOH . 
O 6 HOH A 35 535 68 HOH HOH . 
O 6 HOH A 36 536 138 HOH HOH . 
O 6 HOH A 37 537 41 HOH HOH . 
O 6 HOH A 38 538 96 HOH HOH . 
O 6 HOH A 39 539 74 HOH HOH . 
O 6 HOH A 40 540 71 HOH HOH . 
O 6 HOH A 41 541 55 HOH HOH . 
O 6 HOH A 42 542 90 HOH HOH . 
P 6 HOH B 1 501 122 HOH HOH . 
P 6 HOH B 2 502 7 HOH HOH . 
P 6 HOH B 3 503 26 HOH HOH . 
P 6 HOH B 4 504 134 HOH HOH . 
P 6 HOH B 5 505 12 HOH HOH . 
P 6 HOH B 6 506 112 HOH HOH . 
P 6 HOH B 7 507 100 HOH HOH . 
P 6 HOH B 8 508 6 HOH HOH . 
P 6 HOH B 9 509 20 HOH HOH . 
P 6 HOH B 10 510 80 HOH HOH . 
P 6 HOH B 11 511 27 HOH HOH . 
P 6 HOH B 12 512 110 HOH HOH . 
P 6 HOH B 13 513 94 HOH HOH . 
P 6 HOH B 14 514 14 HOH HOH . 
P 6 HOH B 15 515 15 HOH HOH . 
P 6 HOH B 16 516 81 HOH HOH . 
P 6 HOH B 17 517 3 HOH HOH . 
P 6 HOH B 18 518 1 HOH HOH . 
P 6 HOH B 19 519 60 HOH HOH . 
P 6 HOH B 20 520 119 HOH HOH . 
P 6 HOH B 21 521 67 HOH HOH . 
P 6 HOH B 22 522 47 HOH HOH . 
P 6 HOH B 23 523 139 HOH HOH . 
P 6 HOH B 24 524 24 HOH HOH . 
P 6 HOH B 25 525 66 HOH HOH . 
P 6 HOH B 26 526 43 HOH HOH . 
P 6 HOH B 27 527 34 HOH HOH . 
P 6 HOH B 28 528 58 HOH HOH . 
P 6 HOH B 29 529 128 HOH HOH . 
P 6 HOH B 30 530 118 HOH HOH . 
P 6 HOH B 31 531 19 HOH HOH . 
P 6 HOH B 32 532 53 HOH HOH . 
P 6 HOH B 33 533 76 HOH HOH . 
P 6 HOH B 34 534 61 HOH HOH . 
P 6 HOH B 35 535 89 HOH HOH . 
P 6 HOH B 36 536 86 HOH HOH . 
P 6 HOH B 37 537 113 HOH HOH . 
P 6 HOH B 38 538 92 HOH HOH . 
Q 6 HOH C 1 501 109 HOH HOH . 
Q 6 HOH C 2 502 126 HOH HOH . 
Q 6 HOH C 3 503 56 HOH HOH . 
Q 6 HOH C 4 504 105 HOH HOH . 
Q 6 HOH C 5 505 102 HOH HOH . 
Q 6 HOH C 6 506 88 HOH HOH . 
Q 6 HOH C 7 507 29 HOH HOH . 
Q 6 HOH C 8 508 131 HOH HOH . 
Q 6 HOH C 9 509 132 HOH HOH . 
Q 6 HOH C 10 510 104 HOH HOH . 
Q 6 HOH C 11 511 78 HOH HOH . 
Q 6 HOH C 12 512 79 HOH HOH . 
Q 6 HOH C 13 513 72 HOH HOH . 
R 6 HOH D 1 501 25 HOH HOH . 
R 6 HOH D 2 502 121 HOH HOH . 
R 6 HOH D 3 503 21 HOH HOH . 
R 6 HOH D 4 504 106 HOH HOH . 
R 6 HOH D 5 505 125 HOH HOH . 
R 6 HOH D 6 506 129 HOH HOH . 
R 6 HOH D 7 507 36 HOH HOH . 
R 6 HOH D 8 508 124 HOH HOH . 
R 6 HOH D 9 509 38 HOH HOH . 
R 6 HOH D 10 510 127 HOH HOH . 
R 6 HOH D 11 511 22 HOH HOH . 
R 6 HOH D 12 512 77 HOH HOH . 
R 6 HOH D 13 513 101 HOH HOH . 
R 6 HOH D 14 514 103 HOH HOH . 
R 6 HOH D 15 515 135 HOH HOH . 
R 6 HOH D 16 516 82 HOH HOH . 
R 6 HOH D 17 517 108 HOH HOH . 
R 6 HOH D 18 518 8 HOH HOH . 
R 6 HOH D 19 519 83 HOH HOH . 
R 6 HOH D 20 520 40 HOH HOH . 
R 6 HOH D 21 521 52 HOH HOH . 
R 6 HOH D 22 522 42 HOH HOH . 
R 6 HOH D 23 523 13 HOH HOH . 
R 6 HOH D 24 524 62 HOH HOH . 
R 6 HOH D 25 525 85 HOH HOH . 
R 6 HOH D 26 526 130 HOH HOH . 
R 6 HOH D 27 527 9 HOH HOH . 
R 6 HOH D 28 528 64 HOH HOH . 
R 6 HOH D 29 529 111 HOH HOH . 
R 6 HOH D 30 530 45 HOH HOH . 
R 6 HOH D 31 531 10 HOH HOH . 
R 6 HOH D 32 532 31 HOH HOH . 
R 6 HOH D 33 533 123 HOH HOH . 
R 6 HOH D 34 534 48 HOH HOH . 
R 6 HOH D 35 535 49 HOH HOH . 
R 6 HOH D 36 536 93 HOH HOH . 
R 6 HOH D 37 537 28 HOH HOH . 
R 6 HOH D 38 538 54 HOH HOH . 
R 6 HOH D 39 539 69 HOH HOH . 
R 6 HOH D 40 540 120 HOH HOH . 
R 6 HOH D 41 541 133 HOH HOH . 
R 6 HOH D 42 542 95 HOH HOH . 
R 6 HOH D 43 543 84 HOH HOH . 
R 6 HOH D 44 544 91 HOH HOH . 
R 6 HOH D 45 545 115 HOH HOH . 
R 6 HOH D 46 546 87 HOH HOH . 
R 6 HOH D 47 547 70 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . N 5 50.668 -12.163 46.56 1 66.11 ? C1 GOL 403 D 1 
HETATM 2 O O1 GOL . . . N 5 51.667 -11.7 45.688 1 68.3 ? O1 GOL 403 D 1 
HETATM 3 C C2 GOL . . . N 5 51.331 -12.308 47.91 1 61.56 ? C2 GOL 403 D 1 
HETATM 4 O O2 GOL . . . N 5 52.41 -11.397 47.953 1 59.68 ? O2 GOL 403 D 1 
HETATM 5 C C3 GOL . . . N 5 50.31 -12.028 48.996 1 57.49 ? C3 GOL 403 D 1 
HETATM 6 O O3 GOL . . . N 5 50.206 -13.179 49.804 1 56.82 ? O3 GOL 403 D 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#