data_5L3Y # _model_server_result.job_id NSxEk930vkfFRzcbx3eedA _model_server_result.datetime_utc '2024-11-17 09:46:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l3y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5L3Y # _exptl.entry_id 5L3Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 592.213 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[CuII(biot-et-dpea)]2+' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5L3Y _cell.length_a 57.77 _cell.length_b 57.77 _cell.length_c 183.26 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L3Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 112 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 112 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CU1 _struct_conn.ptnr2_label_comp_id CU6 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CU6 _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.177 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C26 H36 Cu N6 O4 S' _chem_comp.formula_weight 592.213 _chem_comp.id CU6 _chem_comp.mon_nstd_flag . _chem_comp.name '[CuII(biot-et-dpea)]2+' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C18 CU6 doub 70 n y C17 C16 CU6 sing 71 n y C18 C19 CU6 sing 72 n y C16 N5 CU6 doub 73 n y C19 C15 CU6 doub 74 n y N5 C15 CU6 sing 75 n y N5 CU1 CU6 sing 76 n n C23 C24 CU6 doub 77 n y C23 N6 CU6 sing 78 n y C15 C14 CU6 sing 79 n n CU1 N6 CU6 sing 80 n n CU1 N4 CU6 sing 81 n n C24 C25 CU6 sing 82 n y N6 C22 CU6 doub 83 n y C14 C13 CU6 sing 84 n n C25 C26 CU6 doub 85 n y C22 C26 CU6 sing 86 n y C22 C21 CU6 sing 87 n n N4 C12 CU6 sing 88 n n N4 C13 CU6 sing 89 n n N4 C20 CU6 sing 90 n n C12 C11 CU6 sing 91 n n C21 C20 CU6 sing 92 n n O2 C10 CU6 doub 93 n n C10 N3 CU6 sing 94 n n C10 C9 CU6 sing 95 n n C11 N3 CU6 sing 96 n n C9 C8 CU6 sing 97 n n C8 C7 CU6 sing 98 n n C7 C6 CU6 sing 99 n n C6 C5 CU6 sing 100 n n C5 C4 CU6 sing 101 n n C5 S1 CU6 sing 102 n n N2 C4 CU6 sing 103 n n N2 C1 CU6 sing 104 n n C4 C2 CU6 sing 105 n n S1 C3 CU6 sing 106 n n C1 O1 CU6 doub 107 n n C1 N1 CU6 sing 108 n n C2 C3 CU6 sing 109 n n C2 N1 CU6 sing 110 n n CU1 O4 CU6 sing 111 n n CU1 O3 CU6 sing 112 n n C2 H1 CU6 sing 113 n n C3 H2 CU6 sing 114 n n C3 H3 CU6 sing 115 n n C4 H4 CU6 sing 116 n n C5 H5 CU6 sing 117 n n C6 H6 CU6 sing 118 n n C6 H7 CU6 sing 119 n n C7 H8 CU6 sing 120 n n C7 H9 CU6 sing 121 n n C8 H10 CU6 sing 122 n n C8 H11 CU6 sing 123 n n C9 H12 CU6 sing 124 n n C9 H13 CU6 sing 125 n n C11 H14 CU6 sing 126 n n C11 H15 CU6 sing 127 n n C13 H16 CU6 sing 128 n n C13 H17 CU6 sing 129 n n C14 H18 CU6 sing 130 n n C14 H19 CU6 sing 131 n n C16 H20 CU6 sing 132 n n C17 H21 CU6 sing 133 n n C19 H22 CU6 sing 134 n n C20 H23 CU6 sing 135 n n C20 H24 CU6 sing 136 n n C25 H25 CU6 sing 137 n n C26 H26 CU6 sing 138 n n C23 H27 CU6 sing 139 n n C24 H28 CU6 sing 140 n n C21 H29 CU6 sing 141 n n C21 H30 CU6 sing 142 n n C18 H31 CU6 sing 143 n n C12 H32 CU6 sing 144 n n C12 H33 CU6 sing 145 n n N3 H34 CU6 sing 146 n n N2 H35 CU6 sing 147 n n N1 H36 CU6 sing 148 n n # _atom_sites.entry_id 5L3Y _atom_sites.fract_transf_matrix[1][1] 0.01731 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01731 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005457 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU6 A 1 201 1 CU6 SM6 . C 3 HOH A 1 301 28 HOH HOH . C 3 HOH A 2 302 23 HOH HOH . C 3 HOH A 3 303 19 HOH HOH . C 3 HOH A 4 304 32 HOH HOH . C 3 HOH A 5 305 34 HOH HOH . C 3 HOH A 6 306 2 HOH HOH . C 3 HOH A 7 307 3 HOH HOH . C 3 HOH A 8 308 40 HOH HOH . C 3 HOH A 9 309 18 HOH HOH . C 3 HOH A 10 310 13 HOH HOH . C 3 HOH A 11 311 27 HOH HOH . C 3 HOH A 12 312 9 HOH HOH . C 3 HOH A 13 313 4 HOH HOH . C 3 HOH A 14 314 44 HOH HOH . C 3 HOH A 15 315 16 HOH HOH . C 3 HOH A 16 316 38 HOH HOH . C 3 HOH A 17 317 42 HOH HOH . C 3 HOH A 18 318 35 HOH HOH . C 3 HOH A 19 319 37 HOH HOH . C 3 HOH A 20 320 20 HOH HOH . C 3 HOH A 21 321 17 HOH HOH . C 3 HOH A 22 322 7 HOH HOH . C 3 HOH A 23 323 11 HOH HOH . C 3 HOH A 24 324 6 HOH HOH . C 3 HOH A 25 325 5 HOH HOH . C 3 HOH A 26 326 1 HOH HOH . C 3 HOH A 27 327 21 HOH HOH . C 3 HOH A 28 328 25 HOH HOH . C 3 HOH A 29 329 14 HOH HOH . C 3 HOH A 30 330 8 HOH HOH . C 3 HOH A 31 331 31 HOH HOH . C 3 HOH A 32 332 26 HOH HOH . C 3 HOH A 33 333 15 HOH HOH . C 3 HOH A 34 334 24 HOH HOH . C 3 HOH A 35 335 30 HOH HOH . C 3 HOH A 36 336 22 HOH HOH . C 3 HOH A 37 337 41 HOH HOH . C 3 HOH A 38 338 12 HOH HOH . C 3 HOH A 39 339 10 HOH HOH . C 3 HOH A 40 340 29 HOH HOH . C 3 HOH A 41 341 43 HOH HOH . C 3 HOH A 42 342 36 HOH HOH . C 3 HOH A 43 343 39 HOH HOH . C 3 HOH A 44 344 33 HOH HOH . C 3 HOH A 45 345 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CU6 . . . B 2 -13.336 0.526 -8.484 1 15.12 ? C1 CU6 201 A 1 HETATM 2 C C2 CU6 . . . B 2 -10.964 0.465 -8.157 1 14.51 ? C2 CU6 201 A 1 HETATM 3 C C3 CU6 . . . B 2 -10.276 -0.776 -7.582 1 19.36 ? C3 CU6 201 A 1 HETATM 4 C C4 CU6 . . . B 2 -11.29 0.281 -9.715 1 14.43 ? C4 CU6 201 A 1 HETATM 5 C C5 CU6 . . . B 2 -10.709 -1.142 -10.152 1 15.37 ? C5 CU6 201 A 1 HETATM 6 C C6 CU6 . . . B 2 -11.214 -1.703 -11.453 1 19.8 ? C6 CU6 201 A 1 HETATM 7 C C7 CU6 . . . B 2 -10.546 -2.941 -12.03 1 19.8 ? C7 CU6 201 A 1 HETATM 8 C C8 CU6 . . . B 2 -11.257 -3.495 -13.28 1 21.36 ? C8 CU6 201 A 1 HETATM 9 C C9 CU6 . . . B 2 -10.423 -4.643 -13.812 1 19.72 ? C9 CU6 201 A 1 HETATM 10 C C11 CU6 . . . B 2 -6.59 -4.415 -14.84 1 27.21 ? C11 CU6 201 A 1 HETATM 11 C C13 CU6 . . . B 2 -5.059 -3.829 -17.893 1 45.96 ? C13 CU6 201 A 1 HETATM 12 C C14 CU6 . . . B 2 -4.944 -2.408 -17.358 1 53.85 ? C14 CU6 201 A 1 HETATM 13 C C16 CU6 . . . B 2 -2.313 -2.66 -14.263 1 54.44 ? C16 CU6 201 A 1 HETATM 14 C C17 CU6 . . . B 2 -1.972 -1.362 -14.081 1 69.37 ? C17 CU6 201 A 1 HETATM 15 C C19 CU6 . . . B 2 -3.594 -0.718 -15.919 1 65.83 ? C19 CU6 201 A 1 HETATM 16 C C20 CU6 . . . B 2 -4.975 -6.187 -17.775 1 53.89 ? C20 CU6 201 A 1 HETATM 17 C C22 CU6 . . . B 2 -2.708 -7.448 -17.212 1 44.72 ? C22 CU6 201 A 1 HETATM 18 C C25 CU6 . . . B 2 -0.462 -8.22 -17.863 1 42.72 ? C25 CU6 201 A 1 HETATM 19 C C26 CU6 . . . B 2 -1.898 -8.407 -17.874 1 39.75 ? C26 CU6 201 A 1 HETATM 20 CU CU1 CU6 . . . B 2 -3.399 -5.021 -15.41 1 39.95 ? CU1 CU6 201 A 1 HETATM 21 N N6 CU6 . . . B 2 -2.135 -6.295 -16.482 1 53.11 ? N6 CU6 201 A 1 HETATM 22 C C23 CU6 . . . B 2 -0.677 -6.177 -16.487 1 37.34 ? C23 CU6 201 A 1 HETATM 23 C C24 CU6 . . . B 2 0.111 -7.11 -17.176 1 41.28 ? C24 CU6 201 A 1 HETATM 24 C C21 CU6 . . . B 2 -4.258 -7.488 -17.181 1 40.51 ? C21 CU6 201 A 1 HETATM 25 N N4 CU6 . . . B 2 -5.019 -4.957 -16.886 1 43.65 ? N4 CU6 201 A 1 HETATM 26 N N5 CU6 . . . B 2 -3.295 -2.998 -15.307 1 58.59 ? N5 CU6 201 A 1 HETATM 27 C C18 CU6 . . . B 2 -2.65 -0.417 -14.885 1 71.66 ? C18 CU6 201 A 1 HETATM 28 C C15 CU6 . . . B 2 -3.941 -2.047 -16.201 1 58.64 ? C15 CU6 201 A 1 HETATM 29 C C12 CU6 . . . B 2 -6.371 -5.009 -16.206 1 36.46 ? C12 CU6 201 A 1 HETATM 30 N N3 CU6 . . . B 2 -7.826 -4.777 -14.19 1 21.93 ? N3 CU6 201 A 1 HETATM 31 C C10 CU6 . . . B 2 -9.042 -4.16 -14.273 1 18.95 ? C10 CU6 201 A 1 HETATM 32 O O2 CU6 . . . B 2 -9.09 -3.07 -15.067 1 21.74 ? O2 CU6 201 A 1 HETATM 33 N N2 CU6 . . . B 2 -12.739 0.292 -9.716 1 14.02 ? N2 CU6 201 A 1 HETATM 34 S S1 CU6 . . . B 2 -10.879 -2.1 -8.631 1 19.88 ? S1 CU6 201 A 1 HETATM 35 N N1 CU6 . . . B 2 -12.318 0.629 -7.626 1 16.65 ? N1 CU6 201 A 1 HETATM 36 O O1 CU6 . . . B 2 -14.676 0.536 -8.26 1 19.33 ? O1 CU6 201 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 36 #