data_5L47 # _model_server_result.job_id gNGKA87jzh7UoxcvVRvkNg _model_server_result.datetime_utc '2025-01-22 07:00:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5l47 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":401}' # _entry.id 5L47 # _exptl.entry_id 5L47 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 170.335 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.72 _cell.angle_gamma 90 _cell.entry_id 5L47 _cell.length_a 181.158 _cell.length_b 128.124 _cell.length_c 162.193 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L47 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 33 A CYS 33 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 B SG CYS 33 B CYS 33 1_555 B SG CYS 246 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 C SG CYS 33 C CYS 33 1_555 C SG CYS 246 C CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf4 D SG CYS 33 D CYS 33 1_555 D SG CYS 246 D CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf5 E SG CYS 33 E CYS 33 1_555 E SG CYS 246 E CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc1 C O PRO 68 C PRO 68 1_555 N NA NA . C NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.99 ? metalc ? metalc2 C O ILE 71 C ILE 71 1_555 N NA NA . C NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.115 ? metalc ? metalc3 E O PRO 68 E PRO 68 1_555 U NA NA . E NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc4 E O ILE 71 E ILE 71 1_555 U NA NA . E NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? # _chem_comp.formula 'C12 H26' _chem_comp.formula_weight 170.335 _chem_comp.id D12 _chem_comp.mon_nstd_flag . _chem_comp.name DODECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D12 sing 116 n n C1 H11 D12 sing 117 n n C1 H12 D12 sing 118 n n C1 H13 D12 sing 119 n n C2 C3 D12 sing 120 n n C2 H21 D12 sing 121 n n C2 H22 D12 sing 122 n n C3 C4 D12 sing 123 n n C3 H31 D12 sing 124 n n C3 H32 D12 sing 125 n n C4 C5 D12 sing 126 n n C4 H41 D12 sing 127 n n C4 H42 D12 sing 128 n n C5 C6 D12 sing 129 n n C5 H51 D12 sing 130 n n C5 H52 D12 sing 131 n n C6 C7 D12 sing 132 n n C6 H61 D12 sing 133 n n C6 H62 D12 sing 134 n n C7 C8 D12 sing 135 n n C7 H71 D12 sing 136 n n C7 H72 D12 sing 137 n n C8 C9 D12 sing 138 n n C8 H81 D12 sing 139 n n C8 H82 D12 sing 140 n n C9 C10 D12 sing 141 n n C9 H91 D12 sing 142 n n C9 H92 D12 sing 143 n n C10 C11 D12 sing 144 n n C10 H101 D12 sing 145 n n C10 H102 D12 sing 146 n n C11 C12 D12 sing 147 n n C11 H111 D12 sing 148 n n C11 H112 D12 sing 149 n n C12 H121 D12 sing 150 n n C12 H122 D12 sing 151 n n C12 H123 D12 sing 152 n n # _atom_sites.entry_id 5L47 _atom_sites.fract_transf_matrix[1][1] 0.00552 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001246 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007805 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006321 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 CL A 1 401 319 CL CL . G 3 ACT A 1 402 1 ACT ACT . H 4 NA A 1 403 1 NA NA . I 2 CL B 1 401 318 CL CL . J 5 6JA B 1 402 1 6JA SCN . K 3 ACT B 1 403 1 ACT ACT . L 2 CL C 1 401 318 CL CL . M 3 ACT C 1 402 1 ACT ACT . N 4 NA C 1 403 1 NA NA . O 6 D12 D 1 401 318 D12 LMT . P 2 CL D 1 402 318 CL CL . Q 3 ACT D 1 403 1 ACT ACT . R 4 NA D 1 404 1 NA NA . S 2 CL E 1 401 318 CL CL . T 3 ACT E 1 402 1 ACT ACT . U 4 NA E 1 403 1 NA NA . V 7 HOH A 1 501 17 HOH HOH . V 7 HOH A 2 502 338 HOH HOH . V 7 HOH A 3 503 329 HOH HOH . V 7 HOH A 4 504 321 HOH HOH . V 7 HOH A 5 505 3 HOH HOH . V 7 HOH A 6 506 326 HOH HOH . V 7 HOH A 7 507 4 HOH HOH . V 7 HOH A 8 508 6 HOH HOH . V 7 HOH A 9 509 323 HOH HOH . V 7 HOH A 10 510 330 HOH HOH . V 7 HOH A 11 511 320 HOH HOH . V 7 HOH A 12 512 337 HOH HOH . V 7 HOH A 13 513 328 HOH HOH . V 7 HOH A 14 514 322 HOH HOH . V 7 HOH A 15 515 335 HOH HOH . V 7 HOH A 16 516 324 HOH HOH . V 7 HOH A 17 517 331 HOH HOH . V 7 HOH A 18 518 340 HOH HOH . V 7 HOH A 19 519 328 HOH HOH . V 7 HOH A 20 520 329 HOH HOH . V 7 HOH A 21 521 327 HOH HOH . V 7 HOH A 22 522 332 HOH HOH . V 7 HOH A 23 523 5 HOH HOH . V 7 HOH A 24 524 336 HOH HOH . V 7 HOH A 25 525 2 HOH HOH . V 7 HOH A 26 526 7 HOH HOH . V 7 HOH A 27 527 341 HOH HOH . V 7 HOH A 28 528 333 HOH HOH . W 7 HOH B 1 501 329 HOH HOH . W 7 HOH B 2 502 341 HOH HOH . W 7 HOH B 3 503 12 HOH HOH . W 7 HOH B 4 504 8 HOH HOH . W 7 HOH B 5 505 333 HOH HOH . W 7 HOH B 6 506 342 HOH HOH . W 7 HOH B 7 507 326 HOH HOH . W 7 HOH B 8 508 325 HOH HOH . W 7 HOH B 9 509 320 HOH HOH . W 7 HOH B 10 510 15 HOH HOH . W 7 HOH B 11 511 319 HOH HOH . W 7 HOH B 12 512 322 HOH HOH . W 7 HOH B 13 513 324 HOH HOH . W 7 HOH B 14 514 11 HOH HOH . W 7 HOH B 15 515 340 HOH HOH . W 7 HOH B 16 516 1 HOH HOH . W 7 HOH B 17 517 14 HOH HOH . W 7 HOH B 18 518 338 HOH HOH . W 7 HOH B 19 519 10 HOH HOH . W 7 HOH B 20 520 339 HOH HOH . W 7 HOH B 21 521 343 HOH HOH . W 7 HOH B 22 522 328 HOH HOH . W 7 HOH B 23 523 331 HOH HOH . W 7 HOH B 24 524 334 HOH HOH . W 7 HOH B 25 525 344 HOH HOH . W 7 HOH B 26 526 337 HOH HOH . W 7 HOH B 27 527 330 HOH HOH . W 7 HOH B 28 528 336 HOH HOH . W 7 HOH B 29 529 9 HOH HOH . X 7 HOH C 1 501 16 HOH HOH . X 7 HOH C 2 502 328 HOH HOH . X 7 HOH C 3 503 322 HOH HOH . X 7 HOH C 4 504 321 HOH HOH . X 7 HOH C 5 505 327 HOH HOH . X 7 HOH C 6 506 323 HOH HOH . X 7 HOH C 7 507 319 HOH HOH . X 7 HOH C 8 508 326 HOH HOH . X 7 HOH C 9 509 320 HOH HOH . X 7 HOH C 10 510 324 HOH HOH . X 7 HOH C 11 511 335 HOH HOH . X 7 HOH C 12 512 330 HOH HOH . X 7 HOH C 13 513 325 HOH HOH . X 7 HOH C 14 514 336 HOH HOH . X 7 HOH C 15 515 330 HOH HOH . X 7 HOH C 16 516 337 HOH HOH . X 7 HOH C 17 517 333 HOH HOH . X 7 HOH C 18 518 13 HOH HOH . X 7 HOH C 19 519 330 HOH HOH . Y 7 HOH D 1 501 326 HOH HOH . Y 7 HOH D 2 502 321 HOH HOH . Y 7 HOH D 3 503 320 HOH HOH . Y 7 HOH D 4 504 324 HOH HOH . Y 7 HOH D 5 505 323 HOH HOH . Y 7 HOH D 6 506 332 HOH HOH . Y 7 HOH D 7 507 327 HOH HOH . Y 7 HOH D 8 508 322 HOH HOH . Y 7 HOH D 9 509 325 HOH HOH . Y 7 HOH D 10 510 319 HOH HOH . Y 7 HOH D 11 511 329 HOH HOH . Y 7 HOH D 12 512 334 HOH HOH . Y 7 HOH D 13 513 329 HOH HOH . Y 7 HOH D 14 514 331 HOH HOH . Y 7 HOH D 15 515 335 HOH HOH . Z 7 HOH E 1 501 324 HOH HOH . Z 7 HOH E 2 502 320 HOH HOH . Z 7 HOH E 3 503 326 HOH HOH . Z 7 HOH E 4 504 325 HOH HOH . Z 7 HOH E 5 505 327 HOH HOH . Z 7 HOH E 6 506 333 HOH HOH . Z 7 HOH E 7 507 332 HOH HOH . Z 7 HOH E 8 508 323 HOH HOH . Z 7 HOH E 9 509 332 HOH HOH . Z 7 HOH E 10 510 336 HOH HOH . Z 7 HOH E 11 511 338 HOH HOH . Z 7 HOH E 12 512 334 HOH HOH . Z 7 HOH E 13 513 335 HOH HOH . Z 7 HOH E 14 514 319 HOH HOH . Z 7 HOH E 15 515 331 HOH HOH . Z 7 HOH E 16 516 339 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D12 . . . O 6 52.175 -26.549 38.933 1 76.15 ? C1 D12 401 D 1 HETATM 2 C C2 D12 . . . O 6 53.169 -25.532 39.564 1 75.27 ? C2 D12 401 D 1 HETATM 3 C C3 D12 . . . O 6 53.81 -26.221 40.769 1 73.37 ? C3 D12 401 D 1 HETATM 4 C C4 D12 . . . O 6 54.508 -25.259 41.735 1 72.11 ? C4 D12 401 D 1 HETATM 5 C C5 D12 . . . O 6 54.918 -26.007 43.03 1 70.05 ? C5 D12 401 D 1 HETATM 6 C C6 D12 . . . O 6 55.581 -25.111 44.073 1 70.44 ? C6 D12 401 D 1 HETATM 7 C C7 D12 . . . O 6 56.361 -26.022 45.024 1 73.03 ? C7 D12 401 D 1 HETATM 8 C C8 D12 . . . O 6 56.64 -25.288 46.342 1 75.21 ? C8 D12 401 D 1 HETATM 9 C C9 D12 . . . O 6 57.488 -26.155 47.3 1 76.67 ? C9 D12 401 D 1 HETATM 10 C C10 D12 . . . O 6 57.501 -25.53 48.726 1 77.68 ? C10 D12 401 D 1 HETATM 11 C C11 D12 . . . O 6 58.767 -25.898 49.52 1 75.75 ? C11 D12 401 D 1 HETATM 12 C C12 D12 . . . O 6 58.691 -25.267 50.893 1 74.33 ? C12 D12 401 D 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 12 #