data_5L47
#
_model_server_result.job_id            hjcfx4JCA_iE9bEvi3J2Ng 
_model_server_result.datetime_utc      '2025-01-22 07:03:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5l47 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":402}' 
#
_entry.id    5L47 
#
_exptl.entry_id    5L47 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              59.044 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ACETATE ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.72 
_cell.angle_gamma         90 
_cell.entry_id            5L47 
_cell.length_a            181.158 
_cell.length_b            128.124 
_cell.length_c            162.193 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5L47 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 K N N 
? 3 M N N 
? 3 Q N N 
? 3 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 33 A CYS 33 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf2 B SG CYS 33 B CYS 33 1_555 B SG CYS 246 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf3 C SG CYS 33 C CYS 33 1_555 C SG CYS 246 C CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf4 D SG CYS 33 D CYS 33 1_555 D SG CYS 246 D CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf5 E SG CYS 33 E CYS 33 1_555 E SG CYS 246 E CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc1 C O PRO 68 C PRO 68 1_555 N NA NA . C NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.99 ? 
metalc ? metalc2 C O ILE 71 C ILE 71 1_555 N NA NA . C NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.115 ? 
metalc ? metalc3 E O PRO 68 E PRO 68 1_555 U NA NA . E NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? 
metalc ? metalc4 E O ILE 71 E ILE 71 1_555 U NA NA . E NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? 
#
_chem_comp.formula           'C2 H3 O2 -1' 
_chem_comp.formula_weight    59.044 
_chem_comp.id                ACT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ACETATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O ACT doub 28 n n 
C OXT ACT sing 29 n n 
C CH3 ACT sing 30 n n 
CH3 H1 ACT sing 31 n n 
CH3 H2 ACT sing 32 n n 
CH3 H3 ACT sing 33 n n 
#
_atom_sites.entry_id                     5L47 
_atom_sites.fract_transf_matrix[1][1]    0.00552 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001246 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007805 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006321 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 CL A 1 401 319 CL CL . 
G 3 ACT A 1 402 1 ACT ACT . 
H 4 NA A 1 403 1 NA NA . 
I 2 CL B 1 401 318 CL CL . 
J 5 6JA B 1 402 1 6JA SCN . 
K 3 ACT B 1 403 1 ACT ACT . 
L 2 CL C 1 401 318 CL CL . 
M 3 ACT C 1 402 1 ACT ACT . 
N 4 NA C 1 403 1 NA NA . 
O 6 D12 D 1 401 318 D12 LMT . 
P 2 CL D 1 402 318 CL CL . 
Q 3 ACT D 1 403 1 ACT ACT . 
R 4 NA D 1 404 1 NA NA . 
S 2 CL E 1 401 318 CL CL . 
T 3 ACT E 1 402 1 ACT ACT . 
U 4 NA E 1 403 1 NA NA . 
V 7 HOH A 1 501 17 HOH HOH . 
V 7 HOH A 2 502 338 HOH HOH . 
V 7 HOH A 3 503 329 HOH HOH . 
V 7 HOH A 4 504 321 HOH HOH . 
V 7 HOH A 5 505 3 HOH HOH . 
V 7 HOH A 6 506 326 HOH HOH . 
V 7 HOH A 7 507 4 HOH HOH . 
V 7 HOH A 8 508 6 HOH HOH . 
V 7 HOH A 9 509 323 HOH HOH . 
V 7 HOH A 10 510 330 HOH HOH . 
V 7 HOH A 11 511 320 HOH HOH . 
V 7 HOH A 12 512 337 HOH HOH . 
V 7 HOH A 13 513 328 HOH HOH . 
V 7 HOH A 14 514 322 HOH HOH . 
V 7 HOH A 15 515 335 HOH HOH . 
V 7 HOH A 16 516 324 HOH HOH . 
V 7 HOH A 17 517 331 HOH HOH . 
V 7 HOH A 18 518 340 HOH HOH . 
V 7 HOH A 19 519 328 HOH HOH . 
V 7 HOH A 20 520 329 HOH HOH . 
V 7 HOH A 21 521 327 HOH HOH . 
V 7 HOH A 22 522 332 HOH HOH . 
V 7 HOH A 23 523 5 HOH HOH . 
V 7 HOH A 24 524 336 HOH HOH . 
V 7 HOH A 25 525 2 HOH HOH . 
V 7 HOH A 26 526 7 HOH HOH . 
V 7 HOH A 27 527 341 HOH HOH . 
V 7 HOH A 28 528 333 HOH HOH . 
W 7 HOH B 1 501 329 HOH HOH . 
W 7 HOH B 2 502 341 HOH HOH . 
W 7 HOH B 3 503 12 HOH HOH . 
W 7 HOH B 4 504 8 HOH HOH . 
W 7 HOH B 5 505 333 HOH HOH . 
W 7 HOH B 6 506 342 HOH HOH . 
W 7 HOH B 7 507 326 HOH HOH . 
W 7 HOH B 8 508 325 HOH HOH . 
W 7 HOH B 9 509 320 HOH HOH . 
W 7 HOH B 10 510 15 HOH HOH . 
W 7 HOH B 11 511 319 HOH HOH . 
W 7 HOH B 12 512 322 HOH HOH . 
W 7 HOH B 13 513 324 HOH HOH . 
W 7 HOH B 14 514 11 HOH HOH . 
W 7 HOH B 15 515 340 HOH HOH . 
W 7 HOH B 16 516 1 HOH HOH . 
W 7 HOH B 17 517 14 HOH HOH . 
W 7 HOH B 18 518 338 HOH HOH . 
W 7 HOH B 19 519 10 HOH HOH . 
W 7 HOH B 20 520 339 HOH HOH . 
W 7 HOH B 21 521 343 HOH HOH . 
W 7 HOH B 22 522 328 HOH HOH . 
W 7 HOH B 23 523 331 HOH HOH . 
W 7 HOH B 24 524 334 HOH HOH . 
W 7 HOH B 25 525 344 HOH HOH . 
W 7 HOH B 26 526 337 HOH HOH . 
W 7 HOH B 27 527 330 HOH HOH . 
W 7 HOH B 28 528 336 HOH HOH . 
W 7 HOH B 29 529 9 HOH HOH . 
X 7 HOH C 1 501 16 HOH HOH . 
X 7 HOH C 2 502 328 HOH HOH . 
X 7 HOH C 3 503 322 HOH HOH . 
X 7 HOH C 4 504 321 HOH HOH . 
X 7 HOH C 5 505 327 HOH HOH . 
X 7 HOH C 6 506 323 HOH HOH . 
X 7 HOH C 7 507 319 HOH HOH . 
X 7 HOH C 8 508 326 HOH HOH . 
X 7 HOH C 9 509 320 HOH HOH . 
X 7 HOH C 10 510 324 HOH HOH . 
X 7 HOH C 11 511 335 HOH HOH . 
X 7 HOH C 12 512 330 HOH HOH . 
X 7 HOH C 13 513 325 HOH HOH . 
X 7 HOH C 14 514 336 HOH HOH . 
X 7 HOH C 15 515 330 HOH HOH . 
X 7 HOH C 16 516 337 HOH HOH . 
X 7 HOH C 17 517 333 HOH HOH . 
X 7 HOH C 18 518 13 HOH HOH . 
X 7 HOH C 19 519 330 HOH HOH . 
Y 7 HOH D 1 501 326 HOH HOH . 
Y 7 HOH D 2 502 321 HOH HOH . 
Y 7 HOH D 3 503 320 HOH HOH . 
Y 7 HOH D 4 504 324 HOH HOH . 
Y 7 HOH D 5 505 323 HOH HOH . 
Y 7 HOH D 6 506 332 HOH HOH . 
Y 7 HOH D 7 507 327 HOH HOH . 
Y 7 HOH D 8 508 322 HOH HOH . 
Y 7 HOH D 9 509 325 HOH HOH . 
Y 7 HOH D 10 510 319 HOH HOH . 
Y 7 HOH D 11 511 329 HOH HOH . 
Y 7 HOH D 12 512 334 HOH HOH . 
Y 7 HOH D 13 513 329 HOH HOH . 
Y 7 HOH D 14 514 331 HOH HOH . 
Y 7 HOH D 15 515 335 HOH HOH . 
Z 7 HOH E 1 501 324 HOH HOH . 
Z 7 HOH E 2 502 320 HOH HOH . 
Z 7 HOH E 3 503 326 HOH HOH . 
Z 7 HOH E 4 504 325 HOH HOH . 
Z 7 HOH E 5 505 327 HOH HOH . 
Z 7 HOH E 6 506 333 HOH HOH . 
Z 7 HOH E 7 507 332 HOH HOH . 
Z 7 HOH E 8 508 323 HOH HOH . 
Z 7 HOH E 9 509 332 HOH HOH . 
Z 7 HOH E 10 510 336 HOH HOH . 
Z 7 HOH E 11 511 338 HOH HOH . 
Z 7 HOH E 12 512 334 HOH HOH . 
Z 7 HOH E 13 513 335 HOH HOH . 
Z 7 HOH E 14 514 319 HOH HOH . 
Z 7 HOH E 15 515 331 HOH HOH . 
Z 7 HOH E 16 516 339 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C ACT . . . G 3 27.954 -9.793 6.058 1 73.73 ? C ACT 402 A 1 
HETATM 2 O O ACT . . . G 3 28.884 -10.642 6.026 1 81.67 ? O ACT 402 A 1 
HETATM 3 O OXT ACT . . . G 3 26.724 -9.934 6.087 1 74.74 ? OXT ACT 402 A 1 
HETATM 4 C CH3 ACT . . . G 3 28.369 -8.402 6.089 1 64.23 ? CH3 ACT 402 A 1 
HETATM 5 H H1 ACT . . . G 3 28.489 -8.037 7.106 1 61.41 ? H1 ACT 402 A 1 
HETATM 6 H H2 ACT . . . G 3 27.634 -7.768 5.603 1 60.87 ? H2 ACT 402 A 1 
HETATM 7 H H3 ACT . . . G 3 29.323 -8.263 5.591 1 62.06 ? H3 ACT 402 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           332 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           7 
#